Miyakogusa Predicted Gene

Lj2g3v0933930.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0933930.1 Non Chatacterized Hit- tr|I1N5J5|I1N5J5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.39497
PE,77.82,0,RNA-binding domain, RBD,NULL; coiled-coil,NULL; RRM_6,NULL;
no description,Nucleotide-binding, alpha,CUFF.35797.1
         (916 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G27700.2 | Symbols:  | zinc finger (CCCH-type) family protein...   603   e-172
AT3G27700.1 | Symbols:  | zinc finger (CCCH-type) family protein...   603   e-172

>AT3G27700.2 | Symbols:  | zinc finger (CCCH-type) family protein /
           RNA recognition motif (RRM)-containing protein |
           chr3:10257681-10261330 REVERSE LENGTH=908
          Length = 908

 Score =  603 bits (1554), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 364/867 (41%), Positives = 507/867 (58%), Gaps = 102/867 (11%)

Query: 1   MELKVSSPKLESVAPSDCLSDPEEKEVSXXXXXXXXXXXX--XXXXXSQSLERDVSDPVI 58
           MEL VSSPK   ++P DC+SDPEE+                      SQSLE+D SD   
Sbjct: 1   MELSVSSPKQSVLSPPDCMSDPEEEHEISEEEDDDRNHKHRRKEETRSQSLEQDSSDQAF 60

Query: 59  SRPFRKRNKNFGNRPPFKGNESLSFETLKAYGDAATDKEFYSKFEXXXXXXXXXXXXXLD 118
           SRP+RK  +++ N   F  +E  SF T               +F+               
Sbjct: 61  SRPYRKNYRHYENGNSFSEHEKRSFGTGSGQ---------RVQFD--------------- 96

Query: 119 MSQRLRTNQSFTVDPGAGRGRGRESGFWNQRESRLSSMDVASQIVQQRSIPSSLYTGRGL 178
            +QR+R+N  F+ D G GRGRG   G W QR+SR + +D++S +VQ  S+   ++ GRGL
Sbjct: 97  -NQRMRSNPMFSRDSGPGRGRG-NYGSWAQRDSRFNPVDLSSHMVQVGSMGQGMFGGRGL 154

Query: 179 PNVSNAQNASWNTFGLIPAVPNGGMDMLHPLGLQGTLRQPMNSSLNVNIPRQRCRDFEER 238
             VS AQ+A W  FG+IP VPNGG+D  H   LQG+LR P+N+ LN+ IPRQRCRDFEER
Sbjct: 155 AGVSAAQSAPWPPFGMIPGVPNGGLDGFH--HLQGSLRPPLNAPLNMGIPRQRCRDFEER 212

Query: 239 GYCLRGDMCPMEHGVNRIVIEDVQGLSQFNLPVSLPSAPLIGA-----PAGSGSHHSVNA 293
           G+CLRGDMCPMEHG+NRIV++DVQ LSQFNLPVS+P AP + A     PA  G    +N 
Sbjct: 213 GFCLRGDMCPMEHGMNRIVVDDVQSLSQFNLPVSVPGAPHLAASSKQVPAQFGGASFMNP 272

Query: 294 STTSVNSKCIPGKKSVVGDDGMPVDSAYPGLGCTSGADLYDPDQPLWNNSGLESSNALLS 353
                + +   G  +V   DG+    AYP  G   G D YDPDQPLWNNS  E+S A+ +
Sbjct: 273 K--GAHGRTNEGGMAV---DGLGYGDAYPSAG---GTDFYDPDQPLWNNSTGETSGAIST 324

Query: 354 IQSSKIDET----ELISSEALNSDYPVGTTRTSVNLQGSSSSVWARMNSSRNRFDMKEKT 409
           + S  +DE     +  + +A  +   +  +R++      S SVW RM  S ++ + KEK 
Sbjct: 325 LNSHGVDENVAPLDDSNQDAAENGCGIRDSRST------SQSVWGRMKGSNSQANSKEKA 378

Query: 410 NSMISSFHYPQNQLKEDNDELVGSRSTSCQGKQIIADDTDPRSMETLLKAQAFNMRNIRK 469
           +++++S   P++QLKE       S ++S  GKQ    ++  + +++   +    M N RK
Sbjct: 379 DAVLNSSAVPEDQLKEV------SVNSSRHGKQNHVGESVAKVVDSSNISNDM-MNNTRK 431

Query: 470 PSQKALCTLFVSGIPQRSNKRETLLTHFKKFGEVIDIHIPMNSDRAFVQFSKREEAEAAL 529
           P+QKA+ TLFV+ +P  SN+R+ +L HF+KFG+VIDIHIP+NS+RAFVQFSKREEAE+AL
Sbjct: 432 PTQKAMRTLFVNYVPHESNRRDLILAHFQKFGKVIDIHIPVNSERAFVQFSKREEAESAL 491

Query: 530 KSPDAVMGNRFIKLFWANRDCVRNDCTASGNGVIVTPRGQAPAFVPSHPVVTDRRKDIHQ 589
           ++PDAVMGNRFIKL+WANRD + ++  ++G+G  +  R    +   +   +    K  H 
Sbjct: 492 RAPDAVMGNRFIKLWWANRDSIPDNGLSTGSGASMKGRSMTASGAQNQFPIAAASKSNHV 551

Query: 590 TDASKT-IFEV---PSPSDQPKHIIA--GGPKAPPPSQKKYENLEHLKEELRKKQEMLDQ 643
           +  +K   F+    PS S+QPK ++    GPK  P  QKK + LE LKE LRKKQEML+Q
Sbjct: 552 SSIAKVPTFQTGGAPSSSEQPKPVVVTTSGPKVTPLQQKKADTLERLKETLRKKQEMLEQ 611

Query: 644 KRNEFKRQLSKLEKQATGLKGEIVTEHAAKRPKTSMTTDV-AKLTSPQSSDADPGMTSLH 702
           KRNE++++L+ LEKQ T +K E   E  AKR K    +D  A + SP++           
Sbjct: 612 KRNEYRKKLATLEKQGTVVKREEADEPDAKRVKLDTASDSGAAIASPKT----------- 660

Query: 703 AEATTDRNKQLVSTVS------QSPKASTTMRVLEP----TGLNQPIQPFVPVNRYKLDN 752
            E++TD+   ++  +S      ++P   +      P    T LN P+     VNRYKLDN
Sbjct: 661 -ESSTDKKVPILKPLSTAKLSTETPSPDSKNFKQRPYSFTTSLNAPM-----VNRYKLDN 714

Query: 753 RPTAFRIITPLPDGLANVASLKEHFLPYGELSSVEL-----VDVQVDDSSQQE---AHIN 804
           R T  +++ PLP GLA+VA +KEHF  YGE+S VEL     +D   D  +Q E   A + 
Sbjct: 715 RTTTIKVVPPLPTGLADVAVVKEHFSSYGEVSKVELEDNASIDSGKDHETQNESRAACVT 774

Query: 805 FTTRRAAERAFINGKCWKDHNLEFMWL 831
           F  R AAE+AF N KCW++H L+ +W+
Sbjct: 775 FVKRSAAEKAFANAKCWQEHTLQLVWV 801


>AT3G27700.1 | Symbols:  | zinc finger (CCCH-type) family protein /
           RNA recognition motif (RRM)-containing protein |
           chr3:10257681-10261330 REVERSE LENGTH=908
          Length = 908

 Score =  603 bits (1554), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 364/867 (41%), Positives = 507/867 (58%), Gaps = 102/867 (11%)

Query: 1   MELKVSSPKLESVAPSDCLSDPEEKEVSXXXXXXXXXXXX--XXXXXSQSLERDVSDPVI 58
           MEL VSSPK   ++P DC+SDPEE+                      SQSLE+D SD   
Sbjct: 1   MELSVSSPKQSVLSPPDCMSDPEEEHEISEEEDDDRNHKHRRKEETRSQSLEQDSSDQAF 60

Query: 59  SRPFRKRNKNFGNRPPFKGNESLSFETLKAYGDAATDKEFYSKFEXXXXXXXXXXXXXLD 118
           SRP+RK  +++ N   F  +E  SF T               +F+               
Sbjct: 61  SRPYRKNYRHYENGNSFSEHEKRSFGTGSGQ---------RVQFD--------------- 96

Query: 119 MSQRLRTNQSFTVDPGAGRGRGRESGFWNQRESRLSSMDVASQIVQQRSIPSSLYTGRGL 178
            +QR+R+N  F+ D G GRGRG   G W QR+SR + +D++S +VQ  S+   ++ GRGL
Sbjct: 97  -NQRMRSNPMFSRDSGPGRGRG-NYGSWAQRDSRFNPVDLSSHMVQVGSMGQGMFGGRGL 154

Query: 179 PNVSNAQNASWNTFGLIPAVPNGGMDMLHPLGLQGTLRQPMNSSLNVNIPRQRCRDFEER 238
             VS AQ+A W  FG+IP VPNGG+D  H   LQG+LR P+N+ LN+ IPRQRCRDFEER
Sbjct: 155 AGVSAAQSAPWPPFGMIPGVPNGGLDGFH--HLQGSLRPPLNAPLNMGIPRQRCRDFEER 212

Query: 239 GYCLRGDMCPMEHGVNRIVIEDVQGLSQFNLPVSLPSAPLIGA-----PAGSGSHHSVNA 293
           G+CLRGDMCPMEHG+NRIV++DVQ LSQFNLPVS+P AP + A     PA  G    +N 
Sbjct: 213 GFCLRGDMCPMEHGMNRIVVDDVQSLSQFNLPVSVPGAPHLAASSKQVPAQFGGASFMNP 272

Query: 294 STTSVNSKCIPGKKSVVGDDGMPVDSAYPGLGCTSGADLYDPDQPLWNNSGLESSNALLS 353
                + +   G  +V   DG+    AYP  G   G D YDPDQPLWNNS  E+S A+ +
Sbjct: 273 K--GAHGRTNEGGMAV---DGLGYGDAYPSAG---GTDFYDPDQPLWNNSTGETSGAIST 324

Query: 354 IQSSKIDET----ELISSEALNSDYPVGTTRTSVNLQGSSSSVWARMNSSRNRFDMKEKT 409
           + S  +DE     +  + +A  +   +  +R++      S SVW RM  S ++ + KEK 
Sbjct: 325 LNSHGVDENVAPLDDSNQDAAENGCGIRDSRST------SQSVWGRMKGSNSQANSKEKA 378

Query: 410 NSMISSFHYPQNQLKEDNDELVGSRSTSCQGKQIIADDTDPRSMETLLKAQAFNMRNIRK 469
           +++++S   P++QLKE       S ++S  GKQ    ++  + +++   +    M N RK
Sbjct: 379 DAVLNSSAVPEDQLKEV------SVNSSRHGKQNHVGESVAKVVDSSNISNDM-MNNTRK 431

Query: 470 PSQKALCTLFVSGIPQRSNKRETLLTHFKKFGEVIDIHIPMNSDRAFVQFSKREEAEAAL 529
           P+QKA+ TLFV+ +P  SN+R+ +L HF+KFG+VIDIHIP+NS+RAFVQFSKREEAE+AL
Sbjct: 432 PTQKAMRTLFVNYVPHESNRRDLILAHFQKFGKVIDIHIPVNSERAFVQFSKREEAESAL 491

Query: 530 KSPDAVMGNRFIKLFWANRDCVRNDCTASGNGVIVTPRGQAPAFVPSHPVVTDRRKDIHQ 589
           ++PDAVMGNRFIKL+WANRD + ++  ++G+G  +  R    +   +   +    K  H 
Sbjct: 492 RAPDAVMGNRFIKLWWANRDSIPDNGLSTGSGASMKGRSMTASGAQNQFPIAAASKSNHV 551

Query: 590 TDASKT-IFEV---PSPSDQPKHIIA--GGPKAPPPSQKKYENLEHLKEELRKKQEMLDQ 643
           +  +K   F+    PS S+QPK ++    GPK  P  QKK + LE LKE LRKKQEML+Q
Sbjct: 552 SSIAKVPTFQTGGAPSSSEQPKPVVVTTSGPKVTPLQQKKADTLERLKETLRKKQEMLEQ 611

Query: 644 KRNEFKRQLSKLEKQATGLKGEIVTEHAAKRPKTSMTTDV-AKLTSPQSSDADPGMTSLH 702
           KRNE++++L+ LEKQ T +K E   E  AKR K    +D  A + SP++           
Sbjct: 612 KRNEYRKKLATLEKQGTVVKREEADEPDAKRVKLDTASDSGAAIASPKT----------- 660

Query: 703 AEATTDRNKQLVSTVS------QSPKASTTMRVLEP----TGLNQPIQPFVPVNRYKLDN 752
            E++TD+   ++  +S      ++P   +      P    T LN P+     VNRYKLDN
Sbjct: 661 -ESSTDKKVPILKPLSTAKLSTETPSPDSKNFKQRPYSFTTSLNAPM-----VNRYKLDN 714

Query: 753 RPTAFRIITPLPDGLANVASLKEHFLPYGELSSVEL-----VDVQVDDSSQQE---AHIN 804
           R T  +++ PLP GLA+VA +KEHF  YGE+S VEL     +D   D  +Q E   A + 
Sbjct: 715 RTTTIKVVPPLPTGLADVAVVKEHFSSYGEVSKVELEDNASIDSGKDHETQNESRAACVT 774

Query: 805 FTTRRAAERAFINGKCWKDHNLEFMWL 831
           F  R AAE+AF N KCW++H L+ +W+
Sbjct: 775 FVKRSAAEKAFANAKCWQEHTLQLVWV 801