Miyakogusa Predicted Gene

Lj2g3v0932920.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0932920.1 Non Chatacterized Hit- tr|G5DXD8|G5DXD8_SILLA
Putative uncharacterized protein (Fragment) OS=Silene
,31.67,4e-18,coiled-coil,NULL; DUF1421,Protein of unknown function
DUF1421; seg,NULL; SUBFAMILY NOT NAMED,NULL; F,CUFF.35825.1
         (516 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G14540.1 | Symbols:  | Protein of unknown function (DUF1421) ...   190   2e-48
AT3G01560.1 | Symbols:  | Protein of unknown function (DUF1421) ...   183   2e-46
AT4G28300.1 | Symbols:  | Protein of unknown function (DUF1421) ...    70   5e-12
AT4G28300.2 | Symbols:  | Protein of unknown function (DUF1421) ...    65   8e-11

>AT5G14540.1 | Symbols:  | Protein of unknown function (DUF1421) |
           chr5:4687333-4689624 REVERSE LENGTH=547
          Length = 547

 Score =  190 bits (482), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 99/195 (50%), Positives = 138/195 (70%), Gaps = 11/195 (5%)

Query: 72  RGGGNGINT--DDIVPSYDFKPIRPLAASNY-----DSAPNLSAAFSRPWNSDSNQPIT- 123
           R G NG+ +  + I PSYDF+P+RP A++       D A ++++  +R W++   +P++ 
Sbjct: 37  RVGDNGLESKKEAIFPSYDFQPMRPNASAGLSHHALDLAGSVNSTAARVWDASDPKPVSA 96

Query: 124 ---KSYSSLDSIEPLKVNVEKDRNAFDPQILSEIDQTVKKHTENLLHVLEGVSARLTQLE 180
              +SY S+DS+EP K+  EKDRN+ +  I+S ID+T+K H + LLHV+EGVSARLTQLE
Sbjct: 97  SSARSYGSMDSLEPSKLFAEKDRNSPESAIISAIDRTMKAHADKLLHVMEGVSARLTQLE 156

Query: 181 TRTRHLENSMDDLKVSVGNNHGSTDGKFRQLENILREVQSGVQTIKDKQDIVXXXXXXXX 240
           TRTR LEN +DD+KVSVGN+HG TDGK RQLENI+ EVQ+GVQ +KDKQ+IV        
Sbjct: 157 TRTRDLENLVDDVKVSVGNSHGKTDGKLRQLENIMLEVQNGVQLLKDKQEIVEAQLQLSK 216

Query: 241 XXVSKTDQQSETQTS 255
             +SK +QQ ET ++
Sbjct: 217 LQLSKVNQQPETHST 231


>AT3G01560.1 | Symbols:  | Protein of unknown function (DUF1421) |
           chr3:219884-221707 FORWARD LENGTH=511
          Length = 511

 Score =  183 bits (465), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 117/244 (47%), Positives = 155/244 (63%), Gaps = 44/244 (18%)

Query: 1   MNTTPFMDKQIMDLTHGSSSPQQQSHTNDFIDLMKXXXXXXXXXXXXXXXXXXXXXXXXN 60
           MNT  FMDKQIMDL+  SS       + DFIDLM                          
Sbjct: 1   MNTCQFMDKQIMDLSSSSSL-----PSTDFIDLM-------------------------- 29

Query: 61  LNHHRVVEDEGRG--GGNGINTDD--IVPSYDFKPIRPLAASNYD-SAPNLSAAFSRP-W 114
            N+H   + + +   G NG+++    IVPSYDF PIRP  A+    SA +L+ + +R  W
Sbjct: 30  -NNHDGDDHQKKQVIGDNGLDSKKEVIVPSYDFHPIRPTTAARLSHSALDLAGSTTRVNW 88

Query: 115 NSDSNQPITKS-----YSSLDSIEPLKVNVEKDRNAFDPQILSEI-DQTVKKHTENLLHV 168
           ++   +P++ +     + SLDSIEP K+  +K +N F+  I+SEI D+T+KKHT+ LLHV
Sbjct: 89  SASDYKPVSTTSPNTNFGSLDSIEPSKLVPDKGQNVFNTTIMSEIIDRTMKKHTDTLLHV 148

Query: 169 LEGVSARLTQLETRTRHLENSMDDLKVSVGNNHGSTDGKFRQLENILREVQSGVQTIKDK 228
           +EGVSARL+QLETRT +LEN +DDLKVSV N+HGSTDGK RQL+NIL EVQSGVQ +KDK
Sbjct: 149 MEGVSARLSQLETRTHNLENLVDDLKVSVDNSHGSTDGKMRQLKNILVEVQSGVQLLKDK 208

Query: 229 QDIV 232
           Q+I+
Sbjct: 209 QEIL 212


>AT4G28300.1 | Symbols:  | Protein of unknown function (DUF1421) |
           chr4:14014860-14016823 FORWARD LENGTH=496
          Length = 496

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 85/160 (53%), Gaps = 13/160 (8%)

Query: 75  GNGINTDDIVPSYDFKPIRPLAASNYDSA--PNLSAAFSRPWNSDSNQPITKSYSSLDSI 132
           G    +DDI+ SYD         +N DS+  P+   A +    S+SN+   K+  +  S+
Sbjct: 15  GFDFGSDDILCSYD-------DYTNQDSSNGPHSDPAIAA---SNSNKEFHKTRMARSSV 64

Query: 133 EPLKVNVEKDRNAFDPQILSEIDQTVKKHTENLLHVLEGVSARLTQLETRTRHLENSMDD 192
            P   +     ++    I   +++T+K + +N++  LEG+S+RL+QLE    +L+ ++ +
Sbjct: 65  FPTS-SYSPPEDSLSQDITDTVERTMKMYADNMMRFLEGLSSRLSQLELYCYNLDKTIGE 123

Query: 193 LKVSVGNNHGSTDGKFRQLENILREVQSGVQTIKDKQDIV 232
           ++  + + H   D K R L+  L+EV   VQ ++DKQ++ 
Sbjct: 124 MRSELTHAHEDADVKLRSLDKHLQEVHRSVQILRDKQELA 163


>AT4G28300.2 | Symbols:  | Protein of unknown function (DUF1421) |
           chr4:14015414-14016823 FORWARD LENGTH=438
          Length = 438

 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 53/83 (63%)

Query: 150 ILSEIDQTVKKHTENLLHVLEGVSARLTQLETRTRHLENSMDDLKVSVGNNHGSTDGKFR 209
           I   +++T+K + +N++  LEG+S+RL+QLE    +L+ ++ +++  + + H   D K R
Sbjct: 23  ITDTVERTMKMYADNMMRFLEGLSSRLSQLELYCYNLDKTIGEMRSELTHAHEDADVKLR 82

Query: 210 QLENILREVQSGVQTIKDKQDIV 232
            L+  L+EV   VQ ++DKQ++ 
Sbjct: 83  SLDKHLQEVHRSVQILRDKQELA 105