Miyakogusa Predicted Gene

Lj2g3v0932890.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0932890.1 tr|B9IEW5|B9IEW5_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_776137 PE=4
SV=1,53.95,3e-18,Raffinose_syn,Raffinose synthase; SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,NULL,TC80236.path1.1
         (76 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G40390.1 | Symbols: SIP1 | Raffinose synthase family protein ...    85   1e-17

>AT5G40390.1 | Symbols: SIP1 | Raffinose synthase family protein |
           chr5:16161720-16165085 FORWARD LENGTH=783
          Length = 783

 Score = 84.7 bits (208), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/76 (51%), Positives = 55/76 (72%), Gaps = 2/76 (2%)

Query: 1   MLNTGGAIQSLDFDEAQNLVQVGVRGTGEMRVFSSERPSACRIDGKEADFEYEGSMVIIQ 60
           MLNT GAI+SL +++    V+VGV G GE RV++S++P +C IDG+  +F YE SMV++Q
Sbjct: 710 MLNTSGAIRSLVYNDES--VEVGVFGAGEFRVYASKKPVSCLIDGEVVEFGYEDSMVMVQ 767

Query: 61  VPWPSSSKLSYVQYIF 76
           VPW     LS +QY+F
Sbjct: 768 VPWSGPDGLSSIQYLF 783