Miyakogusa Predicted Gene
- Lj2g3v0932680.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v0932680.1 tr|B7EPZ7|B7EPZ7_ORYSJ (Rice Genome Annotation
Project) RNA recognition motif family protein
OS=Oryz,49.37,0.00000000002,RRM_1,RNA recognition motif domain;
RNA-binding domain, RBD,NULL; seg,NULL; no
description,Nucleotid,CUFF.35793.1
(310 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 275 3e-74
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 266 9e-72
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 263 1e-70
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 182 3e-46
AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 162 2e-40
AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 161 5e-40
AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 161 5e-40
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 159 3e-39
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 159 3e-39
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 158 4e-39
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 158 4e-39
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 150 1e-36
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 150 1e-36
AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 149 2e-36
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 149 3e-36
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 149 3e-36
AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 137 8e-33
AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 | ch... 134 8e-32
AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 112 3e-25
AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 112 3e-25
AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 91 1e-18
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 84 1e-16
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 82 6e-16
AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 79 3e-15
AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 78 7e-15
AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 77 1e-14
AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 76 3e-14
AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding | ch... 74 1e-13
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |... 74 1e-13
AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |... 74 2e-13
AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 72 5e-13
AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 72 5e-13
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 72 5e-13
AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 72 6e-13
AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 72 6e-13
AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 70 2e-12
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45... 69 3e-12
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 69 4e-12
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 69 4e-12
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs... 69 5e-12
AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 68 1e-11
AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 68 1e-11
AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 68 1e-11
AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 68 1e-11
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 66 2e-11
AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 66 3e-11
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 66 4e-11
AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 1e-10
AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 64 1e-10
AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 64 1e-10
AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 64 1e-10
AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 64 1e-10
AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 64 1e-10
AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 3e-10
AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 3e-10
AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 4e-10
AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 4e-10
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 6e-10
AT3G54770.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 6e-10
AT2G43410.1 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 62 6e-10
AT2G43410.4 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 62 6e-10
AT2G43410.3 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 62 6e-10
AT2G43410.2 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 62 6e-10
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 1e-09
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 61 1e-09
AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A... 61 1e-09
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 60 2e-09
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 60 2e-09
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8... 60 2e-09
AT2G44710.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 2e-09
AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 | chr3:5... 60 2e-09
AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 2e-09
AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 60 3e-09
AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 3e-09
AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs... 59 4e-09
AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 | chr1:1... 59 4e-09
AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 5e-09
AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 5e-09
AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 6e-09
AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:30816... 58 7e-09
AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protei... 57 1e-08
AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 1e-08
AT2G16940.2 | Symbols: | Splicing factor, CC1-like | chr2:73428... 57 2e-08
AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT2G16940.1 | Symbols: | Splicing factor, CC1-like | chr2:73428... 57 2e-08
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 56 2e-08
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 56 3e-08
AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 3e-08
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 56 3e-08
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 56 3e-08
AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 4e-08
AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 4e-08
AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 4e-08
AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 5e-08
AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 5e-08
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 55 5e-08
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 55 5e-08
AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 5e-08
AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 5e-08
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 55 6e-08
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 55 6e-08
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 55 6e-08
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif... 55 6e-08
AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, an... 55 7e-08
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circa... 55 7e-08
AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A... 55 7e-08
AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 55 7e-08
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 55 7e-08
AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 | chr5:1920... 54 1e-07
AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47... 54 1e-07
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1... 54 1e-07
AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B... 53 2e-07
AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B... 53 2e-07
AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 53 3e-07
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 3e-07
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 5e-07
AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47... 52 6e-07
AT3G55460.1 | Symbols: SCL30, At-SCL30 | SC35-like splicing fact... 52 7e-07
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 7e-07
AT2G16940.3 | Symbols: | Splicing factor, CC1-like | chr2:73428... 51 8e-07
AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing... 51 9e-07
AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 50 1e-06
AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein ... 50 2e-06
AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 50 2e-06
AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 50 3e-06
AT3G54770.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 5e-06
AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 8e-06
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 275 bits (703), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 137/204 (67%), Positives = 164/204 (80%), Gaps = 1/204 (0%)
Query: 29 DQHHNSQPLTGDGA-SPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRG 87
D SQP +G G S GKIF+GGLARETT A+F+KHFGKYGEITDSVIMKDRKT QPRG
Sbjct: 25 DDDDKSQPHSGGGVDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRG 84
Query: 88 FGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTED 147
FGF+TYAD SVVDKVI+D HII GKQVEIKRTIPRG++ S DFKTKKIFVGGIPS+V +D
Sbjct: 85 FGFVTYADSSVVDKVIQDNHIIIGKQVEIKRTIPRGSMSSNDFKTKKIFVGGIPSSVDDD 144
Query: 148 EFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEIX 207
EF++FF ++GE+K++QIMRDHST RSRGFGF+T++SED VD LL+ GN+I+ +GTQVEI
Sbjct: 145 EFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIK 204
Query: 208 XXXXXXXXXXXXXXXRYNDSRSSY 231
R+ DSRS++
Sbjct: 205 KAEPKKPNSVTTPSKRFGDSRSNF 228
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 266 bits (681), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 132/171 (77%), Positives = 148/171 (86%), Gaps = 2/171 (1%)
Query: 38 TGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPS 97
+GDGASPGKIFIGGL ++TT F KHFGKYGEITDSVIM+DR T QPRGFGFIT+ADPS
Sbjct: 12 SGDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPS 71
Query: 98 VVDKVIEDTHIINGKQVEIKRTIPRGAVG--SKDFKTKKIFVGGIPSNVTEDEFRDFFTR 155
VVDKVIEDTH+INGKQVEIKRTIP+GA G SKD KTKKIFVGGIPS VTEDE +DFF +
Sbjct: 72 VVDKVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAK 131
Query: 156 YGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
YG V ++Q++RDH TNRSRGFGF+ FDSE+ VD+LLS GN ID A TQVEI
Sbjct: 132 YGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEI 182
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 263 bits (672), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 130/171 (76%), Positives = 147/171 (85%), Gaps = 2/171 (1%)
Query: 38 TGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPS 97
+GDGASPGKIFIGGL ++TT F KHFGKYGEITDSVIM+DR T QPRGFGFIT+ADPS
Sbjct: 12 SGDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPS 71
Query: 98 VVDKVIEDTHIINGKQVEIKRTIPRGAVG--SKDFKTKKIFVGGIPSNVTEDEFRDFFTR 155
VVDKVIEDTH+INGKQVEIKRTIP+GA G SKD KTKKIFVGGIPS VTEDE +DFF +
Sbjct: 72 VVDKVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAK 131
Query: 156 YGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
YG V ++Q++RDH TNRSRGFGF+ FDSE+ VD+LLS GN ID A TQV +
Sbjct: 132 YGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVSL 182
>AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=369
Length = 369
Score = 182 bits (462), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 88/169 (52%), Positives = 122/169 (72%), Gaps = 9/169 (5%)
Query: 44 PGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVI 103
PGK+F+GG++ ETT F +FGK+GE+ DSVIM DR T PRGFGF+T+AD +V +KV+
Sbjct: 65 PGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVL 124
Query: 104 EDTHIINGKQVEIKRTIPRGAVGSKDF------KTKKIFVGGIPSNVTEDEFRDFFTRYG 157
E+ H+I+ ++V++KRT+PR G KD KT+KIFVGG+P + EDE +++F YG
Sbjct: 125 EEDHVIDDRKVDLKRTLPR---GDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYG 181
Query: 158 EVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
++ ++QIM DH T RSRGFGF+TF +ED+VD L S G + QVEI
Sbjct: 182 DIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEI 230
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
KIF+GGL + +F YG+I + IM D T + RGFGF+T+ VD++ D
Sbjct: 158 KIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSD 217
Query: 106 --THIINGKQVEIKRTIPR 122
H + KQVEIKR P+
Sbjct: 218 GKVHELGDKQVEIKRAEPK 236
>AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8231179-8232785 FORWARD LENGTH=411
Length = 411
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/178 (44%), Positives = 120/178 (67%), Gaps = 17/178 (9%)
Query: 45 GKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE 104
GK+F+GG++ ET + +HF YGE++ +++M+D+ T +PRGFGF+ ++DPSV+D+V++
Sbjct: 6 GKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQ 65
Query: 105 DTHIINGKQVEIKRTIPR------GAVGSKDF----------KTKKIFVGGIPSNVTEDE 148
+ H I+ ++V++KR + R G G+ + KTKKIFVGG+P +T++E
Sbjct: 66 EKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEE 125
Query: 149 FRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
FR +F YG V D IM D +TNR RGFGF++FDSEDAVD +L D +G QVE+
Sbjct: 126 FRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHK-TFHDLSGKQVEV 182
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
KIF+GGL T +F ++F YG +TD IM D+ T +PRGFGF+++ VD V+
Sbjct: 111 KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHK 170
Query: 106 T-HIINGKQVEIKRTIPRGA 124
T H ++GKQVE+KR +P+ A
Sbjct: 171 TFHDLSGKQVEVKRALPKDA 190
>AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445265-13447592 FORWARD LENGTH=452
Length = 452
Score = 161 bits (408), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 79/167 (47%), Positives = 114/167 (68%), Gaps = 21/167 (12%)
Query: 45 GKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE 104
GK+FIGG++ +T + ++FGKYG++ ++VIM+DR T + RGFGFI +ADPSV ++VI
Sbjct: 12 GKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIM 71
Query: 105 DTHIINGKQVEIKRTIPR--------------------GAVGSKDFKTKKIFVGGIPSNV 144
D HII+G+ VE K+ +PR G G +TKKIFVGG+PS++
Sbjct: 72 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGA-RTKKIFVGGLPSSI 130
Query: 145 TEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLL 191
TE EF+++F ++G + D +M DH+T R RGFGFITFDSE++VD +L
Sbjct: 131 TEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVL 177
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 38 TGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPS 97
G GA KIF+GGL T A+F +F ++G I D V+M D T +PRGFGFIT+
Sbjct: 112 NGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEE 171
Query: 98 VVDKVIEDT-HIINGKQVEIKRTIPR 122
VD V+ T H +NGK VE+KR +P+
Sbjct: 172 SVDMVLHKTFHELNGKMVEVKRAVPK 197
>AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445552-13447592 FORWARD LENGTH=455
Length = 455
Score = 161 bits (408), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 79/167 (47%), Positives = 114/167 (68%), Gaps = 21/167 (12%)
Query: 45 GKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE 104
GK+FIGG++ +T + ++FGKYG++ ++VIM+DR T + RGFGFI +ADPSV ++VI
Sbjct: 15 GKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIM 74
Query: 105 DTHIINGKQVEIKRTIPR--------------------GAVGSKDFKTKKIFVGGIPSNV 144
D HII+G+ VE K+ +PR G G +TKKIFVGG+PS++
Sbjct: 75 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGA-RTKKIFVGGLPSSI 133
Query: 145 TEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLL 191
TE EF+++F ++G + D +M DH+T R RGFGFITFDSE++VD +L
Sbjct: 134 TEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVL 180
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 38 TGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPS 97
G GA KIF+GGL T A+F +F ++G I D V+M D T +PRGFGFIT+
Sbjct: 115 NGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEE 174
Query: 98 VVDKVIEDT-HIINGKQVEIKRTIPR 122
VD V+ T H +NGK VE+KR +P+
Sbjct: 175 SVDMVLHKTFHELNGKMVEVKRAVPK 200
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 159 bits (401), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 110/163 (67%), Gaps = 16/163 (9%)
Query: 45 GKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE 104
GK+FIGG++ +T + +F YG++ ++VIM+DR T + RGFGFI +ADP V ++VI
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIM 65
Query: 105 DTHIINGKQVEIKRTIPR----------------GAVGSKDFKTKKIFVGGIPSNVTEDE 148
D HII+G+ VE K+ +PR V +TKKIFVGG+PS++TE+E
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 149 FRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLL 191
F+++F ++G + D +M DH+T R RGFGFITFDS+DAVD +L
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 32 HNSQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFI 91
H P+ G G KIF+GGL T +F +F ++G I D V+M D T +PRGFGFI
Sbjct: 97 HLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFI 156
Query: 92 TYADPSVVDKVIEDT-HIINGKQVEIKRTIPR 122
T+ VD+V+ T H +NGK VE+KR +P+
Sbjct: 157 TFDSDDAVDRVLHKTFHELNGKLVEVKRAVPK 188
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 159 bits (401), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 110/163 (67%), Gaps = 16/163 (9%)
Query: 45 GKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE 104
GK+FIGG++ +T + +F YG++ ++VIM+DR T + RGFGFI +ADP V ++VI
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIM 65
Query: 105 DTHIINGKQVEIKRTIPR----------------GAVGSKDFKTKKIFVGGIPSNVTEDE 148
D HII+G+ VE K+ +PR V +TKKIFVGG+PS++TE+E
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 149 FRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLL 191
F+++F ++G + D +M DH+T R RGFGFITFDS+DAVD +L
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 32 HNSQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFI 91
H P+ G G KIF+GGL T +F +F ++G I D V+M D T +PRGFGFI
Sbjct: 97 HLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFI 156
Query: 92 TYADPSVVDKVIEDT-HIINGKQVEIKRTIPR 122
T+ VD+V+ T H +NGK VE+KR +P+
Sbjct: 157 TFDSDDAVDRVLHKTFHELNGKLVEVKRAVPK 188
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 158 bits (400), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 110/163 (67%), Gaps = 16/163 (9%)
Query: 45 GKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE 104
GK+FIGG++ +T + +F YG++ ++VIM+DR T + RGFGFI +ADP V ++VI
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIM 65
Query: 105 DTHIINGKQVEIKRTIPR----------------GAVGSKDFKTKKIFVGGIPSNVTEDE 148
D HII+G+ VE K+ +PR V +TKKIFVGG+PS++TE+E
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 149 FRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLL 191
F+++F ++G + D +M DH+T R RGFGFITFDS+DAVD +L
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 32 HNSQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFI 91
H P+ G G KIF+GGL T +F +F ++G I D V+M D T +PRGFGFI
Sbjct: 97 HLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFI 156
Query: 92 TYADPSVVDKVIEDT-HIINGKQVEIKRTIPR 122
T+ VD+V+ T H +NGK VE+KR +P+
Sbjct: 157 TFDSDDAVDRVLHKTFHELNGKLVEVKRAVPK 188
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 158 bits (400), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 110/163 (67%), Gaps = 16/163 (9%)
Query: 45 GKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE 104
GK+FIGG++ +T + +F YG++ ++VIM+DR T + RGFGFI +ADP V ++VI
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIM 65
Query: 105 DTHIINGKQVEIKRTIPR----------------GAVGSKDFKTKKIFVGGIPSNVTEDE 148
D HII+G+ VE K+ +PR V +TKKIFVGG+PS++TE+E
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 149 FRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLL 191
F+++F ++G + D +M DH+T R RGFGFITFDS+DAVD +L
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 32 HNSQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFI 91
H P+ G G KIF+GGL T +F +F ++G I D V+M D T +PRGFGFI
Sbjct: 97 HLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFI 156
Query: 92 TYADPSVVDKVIEDT-HIINGKQVEIKRTIPR 122
T+ VD+V+ T H +NGK VE+KR +P+
Sbjct: 157 TFDSDDAVDRVLHKTFHELNGKLVEVKRAVPK 188
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/160 (45%), Positives = 108/160 (67%), Gaps = 16/160 (10%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
K+FIGG++ ET+ + +F +GE+ ++VIMKDR T + RGFGF+ +ADP+V ++V+
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 106 THIINGKQVEIKRTIPR--------------GAVGSKDFKTKKIFVGGIPSNVTEDEFRD 151
HII+GK VE K+ +PR G+ G + +KKIFVGG+ S+VTE EF+
Sbjct: 67 KHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSN--SKKIFVGGLASSVTEAEFKK 124
Query: 152 FFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLL 191
+F ++G + D +M DH T R RGFGFI++DSE+AVD +L
Sbjct: 125 YFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVL 164
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 69/111 (62%), Gaps = 10/111 (9%)
Query: 19 ARTYSHREDHDQHHNSQP-LTGDGASPG-----KIFIGGLARETTIAQFIKHFGKYGEIT 72
A+ R+DH + S L G SPG KIF+GGLA T A+F K+F ++G IT
Sbjct: 77 AKKAVPRDDHVVFNKSNSSLQG---SPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMIT 133
Query: 73 DSVIMKDRKTAQPRGFGFITYADPSVVDKVIEDT-HIINGKQVEIKRTIPR 122
D V+M D +T +PRGFGFI+Y VDKV++ T H +NGK VE+K +P+
Sbjct: 134 DVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPK 184
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 45/70 (64%)
Query: 129 DFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVD 188
+ ++ K+F+GGI +ED RD+F +GEV + IM+D +T R+RGFGF+ F + +
Sbjct: 2 EMESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAE 61
Query: 189 DLLSMGNKID 198
++ + + ID
Sbjct: 62 RVVLLKHIID 71
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/160 (45%), Positives = 108/160 (67%), Gaps = 16/160 (10%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
K+FIGG++ ET+ + +F +GE+ ++VIMKDR T + RGFGF+ +ADP+V ++V+
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 106 THIINGKQVEIKRTIPR--------------GAVGSKDFKTKKIFVGGIPSNVTEDEFRD 151
HII+GK VE K+ +PR G+ G + +KKIFVGG+ S+VTE EF+
Sbjct: 67 KHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSN--SKKIFVGGLASSVTEAEFKK 124
Query: 152 FFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLL 191
+F ++G + D +M DH T R RGFGFI++DSE+AVD +L
Sbjct: 125 YFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVL 164
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 69/111 (62%), Gaps = 10/111 (9%)
Query: 19 ARTYSHREDHDQHHNSQP-LTGDGASPG-----KIFIGGLARETTIAQFIKHFGKYGEIT 72
A+ R+DH + S L G SPG KIF+GGLA T A+F K+F ++G IT
Sbjct: 77 AKKAVPRDDHVVFNKSNSSLQG---SPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMIT 133
Query: 73 DSVIMKDRKTAQPRGFGFITYADPSVVDKVIEDT-HIINGKQVEIKRTIPR 122
D V+M D +T +PRGFGFI+Y VDKV++ T H +NGK VE+K +P+
Sbjct: 134 DVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPK 184
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 45/70 (64%)
Query: 129 DFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVD 188
+ ++ K+F+GGI +ED RD+F +GEV + IM+D +T R+RGFGF+ F + +
Sbjct: 2 EMESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAE 61
Query: 189 DLLSMGNKID 198
++ + + ID
Sbjct: 62 RVVLLKHIID 71
>AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14156085-14157435 FORWARD LENGTH=404
Length = 404
Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/178 (42%), Positives = 114/178 (64%), Gaps = 17/178 (9%)
Query: 45 GKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE 104
GK+FIGG++ +T ++F +GE+ +M+++ T +PRGFGF+ ++DP+V+D+V++
Sbjct: 6 GKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQ 65
Query: 105 DTHIINGKQVEIKRTI------PRGAVG----SKDF------KTKKIFVGGIPSNVTEDE 148
D H I+ + V++KR + P G G S++F +TKKIFVGG+P +T DE
Sbjct: 66 DKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDE 125
Query: 149 FRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
FR +F YG V D IM D +T R RGFGF++FDSED+VD +L D G QVE+
Sbjct: 126 FRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHK-TFHDLNGKQVEV 182
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
KIF+GGL T +F +F YG ++D+VIM D+ T +PRGFGF+++ VD V+
Sbjct: 111 KIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHK 170
Query: 106 T-HIINGKQVEIKRTIPRGA 124
T H +NGKQVE+KR +P+ A
Sbjct: 171 TFHDLNGKQVEVKRALPKDA 190
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 109/162 (67%), Gaps = 16/162 (9%)
Query: 45 GKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE 104
GK+FIGG++ +T + ++F +GE+ ++VI+KDR T + RGFGF+ +ADP+V + VI
Sbjct: 6 GKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVIT 65
Query: 105 DTHIINGKQVEIKRTIPR---------------GAVGSKDFKTKKIFVGGIPSNVTEDEF 149
+ H I+G+ VE K+ +PR G+ G +T+KIFVGG+PS+VTE +F
Sbjct: 66 EKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPG-RTRKIFVGGLPSSVTESDF 124
Query: 150 RDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLL 191
+ +F ++G D +M DH+T R RGFGFIT+DSE+AV+ +L
Sbjct: 125 KTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVL 166
Score = 84.7 bits (208), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 63/110 (57%), Gaps = 6/110 (5%)
Query: 19 ARTYSHREDHD--QHHNSQPLTGDGASPG---KIFIGGLARETTIAQFIKHFGKYGEITD 73
A+ R+D + NS + G PG KIF+GGL T + F +F ++G TD
Sbjct: 77 AKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTD 136
Query: 74 SVIMKDRKTAQPRGFGFITYADPSVVDKVIEDT-HIINGKQVEIKRTIPR 122
V+M D T +PRGFGFITY V+KV+ T H +NGK VE+KR +P+
Sbjct: 137 VVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPK 186
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 42/65 (64%)
Query: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSM 193
K+F+GGI + E+ +++F+ +GEV + I++D +T R+RGFGF+ F + +++
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 194 GNKID 198
+ ID
Sbjct: 67 KHNID 71
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 109/162 (67%), Gaps = 16/162 (9%)
Query: 45 GKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE 104
GK+FIGG++ +T + ++F +GE+ ++VI+KDR T + RGFGF+ +ADP+V + VI
Sbjct: 6 GKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVIT 65
Query: 105 DTHIINGKQVEIKRTIPR---------------GAVGSKDFKTKKIFVGGIPSNVTEDEF 149
+ H I+G+ VE K+ +PR G+ G +T+KIFVGG+PS+VTE +F
Sbjct: 66 EKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPG-RTRKIFVGGLPSSVTESDF 124
Query: 150 RDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLL 191
+ +F ++G D +M DH+T R RGFGFIT+DSE+AV+ +L
Sbjct: 125 KTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVL 166
Score = 84.7 bits (208), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 63/110 (57%), Gaps = 6/110 (5%)
Query: 19 ARTYSHREDHD--QHHNSQPLTGDGASPG---KIFIGGLARETTIAQFIKHFGKYGEITD 73
A+ R+D + NS + G PG KIF+GGL T + F +F ++G TD
Sbjct: 77 AKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTD 136
Query: 74 SVIMKDRKTAQPRGFGFITYADPSVVDKVIEDT-HIINGKQVEIKRTIPR 122
V+M D T +PRGFGFITY V+KV+ T H +NGK VE+KR +P+
Sbjct: 137 VVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPK 186
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 42/65 (64%)
Query: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSM 193
K+F+GGI + E+ +++F+ +GEV + I++D +T R+RGFGF+ F + +++
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 194 GNKID 198
+ ID
Sbjct: 67 KHNID 71
>AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=453
Length = 453
Score = 137 bits (346), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 108/182 (59%), Gaps = 38/182 (20%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
K+FIGG++ ET+ + +F +GE+ ++VIMKDR T + RGFGF+ +ADP+V ++V+
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 106 THIINGK----------------------QVEIKRTIPR--------------GAVGSKD 129
HII+GK VE K+ +PR G+ G +
Sbjct: 67 KHIIDGKILVDSIVYNQLCRSDKCISLSEVVEAKKAVPRDDHVVFNKSNSSLQGSPGPSN 126
Query: 130 FKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDD 189
+KKIFVGG+ S+VTE EF+ +F ++G + D +M DH T R RGFGFI++DSE+AVD
Sbjct: 127 --SKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDK 184
Query: 190 LL 191
+L
Sbjct: 185 VL 186
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 69/111 (62%), Gaps = 10/111 (9%)
Query: 19 ARTYSHREDHDQHHNSQP-LTGDGASPG-----KIFIGGLARETTIAQFIKHFGKYGEIT 72
A+ R+DH + S L G SPG KIF+GGLA T A+F K+F ++G IT
Sbjct: 99 AKKAVPRDDHVVFNKSNSSLQG---SPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMIT 155
Query: 73 DSVIMKDRKTAQPRGFGFITYADPSVVDKVIEDT-HIINGKQVEIKRTIPR 122
D V+M D +T +PRGFGFI+Y VDKV++ T H +NGK VE+K +P+
Sbjct: 156 DVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPK 206
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 45/70 (64%)
Query: 129 DFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVD 188
+ ++ K+F+GGI +ED RD+F +GEV + IM+D +T R+RGFGF+ F + +
Sbjct: 2 EMESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAE 61
Query: 189 DLLSMGNKID 198
++ + + ID
Sbjct: 62 RVVLLKHIID 71
>AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 |
chr1:21727374-21728539 FORWARD LENGTH=360
Length = 360
Score = 134 bits (337), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 111/187 (59%), Gaps = 27/187 (14%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
K+F+GG+A+ET+ ++F +YG + ++V+ K++ T +PRGFGF+ +A+ V K + D
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66
Query: 106 THIINGKQVEIKRTIPRGAVGSKDF--------------------------KTKKIFVGG 139
TH I GK V++++ I + + + F +TKKIFVGG
Sbjct: 67 THFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIFVGG 126
Query: 140 IPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDF 199
+ SN TE+EF+ +F R+G D +M D TNR RGFGF+T+DSED+V+ ++ N +
Sbjct: 127 LSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQ-SNFHEL 185
Query: 200 AGTQVEI 206
+ +VE+
Sbjct: 186 SDKRVEV 192
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
KIF+GGL+ TT +F +F ++G TD V+M D T +PRGFGF+TY V+ V++
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQS 180
Query: 106 T-HIINGKQVEIKRTIPRGAVGSKD 129
H ++ K+VE+KR IP+ + S +
Sbjct: 181 NFHELSDKRVEVKRAIPKEGIQSNN 205
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 129 DFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSE-DAV 187
D+ K+FVGGI +E+ + +F+RYG V + + ++ T + RGFGF+ F ++ D V
Sbjct: 2 DYDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVV 61
Query: 188 DDL 190
L
Sbjct: 62 KAL 64
>AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 92/161 (57%), Gaps = 2/161 (1%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
K+ + G+ + + K+G++ D ++MKDR T + RGFG++T+A ++
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKG 63
Query: 106 THIINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIM 165
H + + +E+K P+ + K +IFV IPS+V+E +FR F RYGE+ D +
Sbjct: 64 EHFLGNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMP 123
Query: 166 RDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
+D+++ + RG GFITF S D+V+DL M + D GT V +
Sbjct: 124 KDYNSKQHRGIGFITFSSADSVEDL--MEDTHDLGGTTVAV 162
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 48/81 (59%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
KIF+G L +E ++ +FG++G I D+ I KD K + RGFGF+T+A+ V D+V
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARR 300
Query: 106 THIINGKQVEIKRTIPRGAVG 126
+H I G++V I P G
Sbjct: 301 SHEICGQEVAIDSATPLDEAG 321
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 45/77 (58%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
+IF+ + + + F HF +YGEITD + KD + Q RG GFIT++ V+ ++ED
Sbjct: 92 RIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMED 151
Query: 106 THIINGKQVEIKRTIPR 122
TH + G V + R P+
Sbjct: 152 THDLGGTTVAVDRATPK 168
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 4/69 (5%)
Query: 133 KKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDS-EDAVDDLL 191
+K+ V GIP ++ D +D+ +++G+++D +M+D ST RSRGFG++TF S EDA + L
Sbjct: 3 RKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK 62
Query: 192 S---MGNKI 197
+GN+I
Sbjct: 63 GEHFLGNRI 71
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 3/110 (2%)
Query: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSM 193
KIFVG +P + D+ RD+F R+G ++D I +D + RGFGF+TF D +
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARR 300
Query: 194 GNKIDFAGTQVEIXXXXXXXXX-XXXXXXXRYNDSRSSYSSGYGEAYDGF 242
++I G +V I + SR Y GYG F
Sbjct: 301 SHEI--CGQEVAIDSATPLDEAGPSAGASSMLSSSRPEYFGGYGGPMRAF 348
>AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 92/161 (57%), Gaps = 2/161 (1%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
K+ + G+ + + K+G++ D ++MKDR T + RGFG++T+A ++
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKG 63
Query: 106 THIINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIM 165
H + + +E+K P+ + K +IFV IPS+V+E +FR F RYGE+ D +
Sbjct: 64 EHFLGNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMP 123
Query: 166 RDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
+D+++ + RG GFITF S D+V+DL M + D GT V +
Sbjct: 124 KDYNSKQHRGIGFITFSSADSVEDL--MEDTHDLGGTTVAV 162
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 48/81 (59%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
KIF+G L +E ++ +FG++G I D+ I KD K + RGFGF+T+A+ V D+V
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARR 300
Query: 106 THIINGKQVEIKRTIPRGAVG 126
+H I G++V I P G
Sbjct: 301 SHEICGQEVAIDSATPLDEAG 321
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 45/77 (58%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
+IF+ + + + F HF +YGEITD + KD + Q RG GFIT++ V+ ++ED
Sbjct: 92 RIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMED 151
Query: 106 THIINGKQVEIKRTIPR 122
TH + G V + R P+
Sbjct: 152 THDLGGTTVAVDRATPK 168
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 4/69 (5%)
Query: 133 KKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDS-EDAVDDLL 191
+K+ V GIP ++ D +D+ +++G+++D +M+D ST RSRGFG++TF S EDA + L
Sbjct: 3 RKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK 62
Query: 192 S---MGNKI 197
+GN+I
Sbjct: 63 GEHFLGNRI 71
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 3/110 (2%)
Query: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSM 193
KIFVG +P + D+ RD+F R+G ++D I +D + RGFGF+TF D +
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARR 300
Query: 194 GNKIDFAGTQVEIXXXXXXXXX-XXXXXXXRYNDSRSSYSSGYGEAYDGF 242
++I G +V I + SR Y GYG F
Sbjct: 301 SHEI--CGQEVAIDSATPLDEAGPSAGASSMLSSSRPEYFGGYGGPMRAF 348
>AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304106 REVERSE LENGTH=371
Length = 371
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 68/110 (61%), Gaps = 8/110 (7%)
Query: 19 ARTYSHREDHDQHHNSQPLTGDGASPG-----KIFIGGLARETTIAQFIKHFGKYGEITD 73
A+ R+DH + S + SPG KIF+GGLA T A+F K+F ++G ITD
Sbjct: 17 AKKAVPRDDHVVFNKSN--SSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITD 74
Query: 74 SVIMKDRKTAQPRGFGFITYADPSVVDKVIEDT-HIINGKQVEIKRTIPR 122
V+M D +T +PRGFGFI+Y VDKV++ T H +NGK VE+K +P+
Sbjct: 75 VVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPK 124
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 65/105 (61%), Gaps = 17/105 (16%)
Query: 102 VIEDTHIIN-GKQVEIKRTIPR--------------GAVGSKDFKTKKIFVGGIPSNVTE 146
+++++ +N VE K+ +PR G+ G + +KKIFVGG+ S+VTE
Sbjct: 2 LLKESSCLNISLMVEAKKAVPRDDHVVFNKSNSSLQGSPGPSN--SKKIFVGGLASSVTE 59
Query: 147 DEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLL 191
EF+ +F ++G + D +M DH T R RGFGFI++DSE+AVD +L
Sbjct: 60 AEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVL 104
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 88/168 (52%), Gaps = 6/168 (3%)
Query: 45 GKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE 104
K+F+G L + F + G + S ++ +R T Q RGFGF+T + +K +E
Sbjct: 113 AKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 172
Query: 105 --DTHIINGKQVEIKRTIPRGAVGSKDFKTK----KIFVGGIPSNVTEDEFRDFFTRYGE 158
++ +NG+++ + R PRG+ + + +I+VG +P +V F+ +G+
Sbjct: 173 KFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGK 232
Query: 159 VKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
V D +++ D T RSRGFGF+ +E+ V+ ++ + + G +++
Sbjct: 233 VVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKV 280
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 87/168 (51%), Gaps = 6/168 (3%)
Query: 45 GKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE 104
K+F+G LA + F + G + + ++ +R+T Q RGFGF+T + + +E
Sbjct: 150 AKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVE 209
Query: 105 --DTHIINGKQVEIKRTIPRGAVGSKDFKTK----KIFVGGIPSNVTEDEFRDFFTRYGE 158
+ + +NG+ + + + PRG+ + + +++VG +P +V F+ +G+
Sbjct: 210 KFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGK 269
Query: 159 VKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
V + +++ D T RSRGFGF+T D +++ +S + + G + +
Sbjct: 270 VVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRV 317
>AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=429
Length = 429
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 84/170 (49%), Gaps = 18/170 (10%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
K+F+G + + T Q + F ++ + + I+K++ T PRG F+T DKVI
Sbjct: 13 KLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINS 72
Query: 106 THIINGKQVEIKRTIP--------RGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYG 157
H K+T+P + A G + K+FVG +P NV+E E + F+ YG
Sbjct: 73 FHN--------KKTLPGASSPLQVKYADGELERLEHKLFVGMLPKNVSETEVQSLFSEYG 124
Query: 158 EVKDNQIMRDHSTNRSRGFGFITFDS-EDAVDDLLSMGNKIDFAGTQVEI 206
+KD QI+R S S+G F+ ++S E AV + ++ + G V +
Sbjct: 125 TIKDLQILRG-SLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPL 173
>AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376612-1379275 REVERSE
LENGTH=441
Length = 441
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 85/170 (50%), Gaps = 18/170 (10%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
K+F+G + + + +Q + F ++ + + I+KD+ T RG F+ DK++
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNA 78
Query: 106 THIINGKQVEIKRTIP--------RGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYG 157
H K+T+P + A G + K+FVG +P NV+E E + F++YG
Sbjct: 79 CHN--------KKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYG 130
Query: 158 EVKDNQIMRDHSTNRSRGFGFITFDS-EDAVDDLLSMGNKIDFAGTQVEI 206
+KD QI+R + S+G F+ +++ E AV + S+ K G+ V +
Sbjct: 131 TIKDLQILRG-AQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPL 179
>AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376710-1379275 REVERSE
LENGTH=439
Length = 439
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 85/170 (50%), Gaps = 18/170 (10%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
K+F+G + + + +Q + F ++ + + I+KD+ T RG F+ DK++
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNA 78
Query: 106 THIINGKQVEIKRTIP--------RGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYG 157
H K+T+P + A G + K+FVG +P NV+E E + F++YG
Sbjct: 79 CHN--------KKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYG 130
Query: 158 EVKDNQIMRDHSTNRSRGFGFITFDS-EDAVDDLLSMGNKIDFAGTQVEI 206
+KD QI+R + S+G F+ +++ E AV + S+ K G+ V +
Sbjct: 131 TIKDLQILRG-AQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPL 179
>AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=438
Length = 438
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 82/171 (47%), Gaps = 11/171 (6%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
K+F+G + + T Q + F ++ + + I+K++ T PRG F+T DKVI
Sbjct: 13 KLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINS 72
Query: 106 TH---IINGKQVEIKRTIPRGAVGSKDF------KTKKIFVGGIPSNVTEDEFRDFFTRY 156
H + G ++ G + D K+FVG +P NV+E E + F+ Y
Sbjct: 73 FHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQSLFSEY 132
Query: 157 GEVKDNQIMRDHSTNRSRGFGFITFDS-EDAVDDLLSMGNKIDFAGTQVEI 206
G +KD QI+R S S+G F+ ++S E AV + ++ + G V +
Sbjct: 133 GTIKDLQILRG-SLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPL 182
>AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding |
chr4:9207164-9214187 REVERSE LENGTH=672
Length = 672
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 84/169 (49%), Gaps = 30/169 (17%)
Query: 40 DGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVV 99
D +S K+F+G + R T + +F ++G + + ++KD++T Q +G F+ YA
Sbjct: 40 DRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDA 99
Query: 100 DKVIEDTHIINGKQVEIKRTIP--------------RGAVGSKDFKTKKIFVGGIPSNVT 145
D+ I H Q+ T+P R +G+ +F K+FVG + T
Sbjct: 100 DRAIRALH----NQI----TLPGGTGPVQVRYADGERERIGTLEF---KLFVGSLNKQAT 148
Query: 146 EDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSED----AVDDL 190
E E + F ++G V+D +MRD +SRG GF+ + S++ A+D L
Sbjct: 149 EKEVEEIFLQFGHVEDVYLMRDE-YRQSRGCGFVKYSSKETAMAAIDGL 196
>AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9214412 REVERSE LENGTH=747
Length = 747
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 84/169 (49%), Gaps = 30/169 (17%)
Query: 40 DGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVV 99
D +S K+F+G + R T + +F ++G + + ++KD++T Q +G F+ YA
Sbjct: 115 DRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDA 174
Query: 100 DKVIEDTHIINGKQVEIKRTIP--------------RGAVGSKDFKTKKIFVGGIPSNVT 145
D+ I H Q+ T+P R +G+ +F K+FVG + T
Sbjct: 175 DRAIRALH----NQI----TLPGGTGPVQVRYADGERERIGTLEF---KLFVGSLNKQAT 223
Query: 146 EDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSED----AVDDL 190
E E + F ++G V+D +MRD +SRG GF+ + S++ A+D L
Sbjct: 224 EKEVEEIFLQFGHVEDVYLMRDE-YRQSRGCGFVKYSSKETAMAAIDGL 271
>AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9208564-9214412 REVERSE LENGTH=533
Length = 533
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 84/169 (49%), Gaps = 30/169 (17%)
Query: 40 DGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVV 99
D +S K+F+G + R T + +F ++G + + ++KD++T Q +G F+ YA
Sbjct: 115 DRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDA 174
Query: 100 DKVIEDTHIINGKQVEIKRTIP--------------RGAVGSKDFKTKKIFVGGIPSNVT 145
D+ I H Q+ T+P R +G+ +F K+FVG + T
Sbjct: 175 DRAIRALH----NQI----TLPGGTGPVQVRYADGERERIGTLEF---KLFVGSLNKQAT 223
Query: 146 EDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSED----AVDDL 190
E E + F ++G V+D +MRD +SRG GF+ + S++ A+D L
Sbjct: 224 EKEVEEIFLQFGHVEDVYLMRDE-YRQSRGCGFVKYSSKETAMAAIDGL 271
>AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 79/155 (50%), Gaps = 12/155 (7%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVI-- 103
K+FI GLA +TT F YG++ +++++ D+ T + +G+GF+T+ VD +
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMH---VDGALLA 132
Query: 104 --EDTHIINGKQVEIKRTIPRGAVGS----KDFKTKKIFVGGIPSNVTEDEFRDFFTRYG 157
E + I+G+ V + + G G+ D +KI+V +P ++ D + F YG
Sbjct: 133 LKEPSKKIDGR-VTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYG 191
Query: 158 EVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLS 192
+V++ + D T +SRGF + + + L+
Sbjct: 192 DVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALA 226
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 129 DFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSED-AV 187
D +K+F+ G+ ++ T + R F+ YG++++ ++ D T +S+G+GF+TF D A+
Sbjct: 71 DISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGAL 130
Query: 188 DDLLSMGNKID 198
L KID
Sbjct: 131 LALKEPSKKID 141
>AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 79/155 (50%), Gaps = 12/155 (7%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVI-- 103
K+FI GLA +TT F YG++ +++++ D+ T + +G+GF+T+ VD +
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMH---VDGALLA 132
Query: 104 --EDTHIINGKQVEIKRTIPRGAVGS----KDFKTKKIFVGGIPSNVTEDEFRDFFTRYG 157
E + I+G+ V + + G G+ D +KI+V +P ++ D + F YG
Sbjct: 133 LKEPSKKIDGR-VTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYG 191
Query: 158 EVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLS 192
+V++ + D T +SRGF + + + L+
Sbjct: 192 DVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALA 226
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 129 DFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSED-AV 187
D +K+F+ G+ ++ T + R F+ YG++++ ++ D T +S+G+GF+TF D A+
Sbjct: 71 DISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGAL 130
Query: 188 DDLLSMGNKID 198
L KID
Sbjct: 131 LALKEPSKKID 141
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 87/180 (48%), Gaps = 21/180 (11%)
Query: 45 GKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE 104
G++++G L T ++ + FG+ G + D I+ D+ T + RGFGF+T +++ E
Sbjct: 116 GRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGS---IEEAKE 172
Query: 105 DTHIINGKQV---EIKRTIPRGAVGSKD--FKTK-------------KIFVGGIPSNVTE 146
+ N Q+ +K P G ++ +TK K++ G + N+T
Sbjct: 173 AMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTS 232
Query: 147 DEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
+D F V +++ + +T RSRGFGFI+F+S + V L+ N ++ G + +
Sbjct: 233 QGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRL 292
>AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 26 EDHDQHHNSQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQP 85
ED +++ + L G+ ++FIGGL R+ + GEI + +MKDR +
Sbjct: 100 EDREKYSHLLSLPPHGS---EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDS 156
Query: 86 RGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVT 145
+G+ F+ + V K IE+ H K I+ ++ ++F+G IP N T
Sbjct: 157 KGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSE--------TKNRLFIGNIPKNWT 208
Query: 146 EDEFRDFFTRYGE-VKDNQIMRDHS-TNRSRGFGFITFDSEDAVD 188
EDEFR G V++ ++++D + T R+RGF F+ + + D
Sbjct: 209 EDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACAD 253
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 77/169 (45%), Gaps = 10/169 (5%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSV-IMKD-RKTAQPRGFGFITYADPSVVD--- 100
++FIG + + T +F K G +++ ++KD T + RGF F+ Y + + D
Sbjct: 197 RLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSR 256
Query: 101 -KVIEDTHIINGKQVEIKRTIPRGAV--GSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYG 157
K+I+ + G + P+ + + + K ++V IP N + ++ ++ F R+G
Sbjct: 257 QKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHG 316
Query: 158 EVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
EV +I+ R FGF+ + + + + + G +E+
Sbjct: 317 EV--TKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEV 363
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 41/73 (56%)
Query: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSM 193
++F+GG+P +V E++ RD GE+ + ++M+D + S+G+ F+ F ++D +
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176
Query: 194 GNKIDFAGTQVEI 206
+ +F G +
Sbjct: 177 LHSKEFKGKTIRC 189
>AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 26 EDHDQHHNSQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQP 85
ED +++ + L G+ ++FIGGL R+ + GEI + +MKDR +
Sbjct: 100 EDREKYSHLLSLPPHGS---EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDS 156
Query: 86 RGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVT 145
+G+ F+ + V K IE+ H K I+ ++ ++F+G IP N T
Sbjct: 157 KGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSE--------TKNRLFIGNIPKNWT 208
Query: 146 EDEFRDFFTRYGE-VKDNQIMRDHS-TNRSRGFGFITFDSEDAVD 188
EDEFR G V++ ++++D + T R+RGF F+ + + D
Sbjct: 209 EDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACAD 253
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 77/169 (45%), Gaps = 10/169 (5%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSV-IMKD-RKTAQPRGFGFITYADPSVVD--- 100
++FIG + + T +F K G +++ ++KD T + RGF F+ Y + + D
Sbjct: 197 RLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSR 256
Query: 101 -KVIEDTHIINGKQVEIKRTIPRGAV--GSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYG 157
K+I+ + G + P+ + + + K ++V IP N + ++ ++ F R+G
Sbjct: 257 QKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHG 316
Query: 158 EVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
EV +I+ R FGF+ + + + + + G +E+
Sbjct: 317 EV--TKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEV 363
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 41/73 (56%)
Query: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSM 193
++F+GG+P +V E++ RD GE+ + ++M+D + S+G+ F+ F ++D +
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176
Query: 194 GNKIDFAGTQVEI 206
+ +F G +
Sbjct: 177 LHSKEFKGKTIRC 189
>AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 72/145 (49%), Gaps = 10/145 (6%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
++FIGGL R+ + GEI + +MKDR + +G+ F+ + V K IE+
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176
Query: 106 THIINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGE-VKDNQI 164
H K+ + T + ++F+G IP N TEDEFR G V++ ++
Sbjct: 177 LH---SKEFKASST-----ANCSLSLSNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIEL 228
Query: 165 MRDHS-TNRSRGFGFITFDSEDAVD 188
++D + T R+RGF F+ + + D
Sbjct: 229 IKDPTNTTRNRGFAFVLYYNNACAD 253
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 77/169 (45%), Gaps = 10/169 (5%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSV-IMKD-RKTAQPRGFGFITYADPSVVD--- 100
++FIG + + T +F K G +++ ++KD T + RGF F+ Y + + D
Sbjct: 197 RLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSR 256
Query: 101 -KVIEDTHIINGKQVEIKRTIPRGAV--GSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYG 157
K+I+ + G + P+ + + + K ++V IP N + ++ ++ F R+G
Sbjct: 257 QKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHG 316
Query: 158 EVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
EV +I+ R FGF+ + + + + + G +E+
Sbjct: 317 EV--TKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEV 363
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 41/63 (65%), Gaps = 4/63 (6%)
Query: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSED----AVDD 189
++F+GG+P +V E++ RD GE+ + ++M+D + S+G+ F+ F ++D A+++
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176
Query: 190 LLS 192
L S
Sbjct: 177 LHS 179
>AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A |
chr5:22295412-22298126 FORWARD LENGTH=387
Length = 387
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 75/146 (51%), Gaps = 7/146 (4%)
Query: 47 IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE-- 104
++IG L + + F + GE T + +++++ T Q G+GFI + SV ++V++
Sbjct: 62 LWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTY 121
Query: 105 DTHIINGKQVEIKRTIPRGAVGSKDFKTK----KIFVGGIPSNVTEDEFRDFFTR-YGEV 159
+ + + + + G K F+T+ IFVG + VT+ D F YG V
Sbjct: 122 NGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSV 181
Query: 160 KDNQIMRDHSTNRSRGFGFITFDSED 185
K +++ D +T RS+G+GF+ F E+
Sbjct: 182 KGAKVVLDRTTGRSKGYGFVRFADEN 207
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 82/181 (45%), Gaps = 30/181 (16%)
Query: 47 IFIGGLARETTIAQFIKHFGK-YGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
IF+G LA E T F YG + + ++ DR T + +G+GF+ +AD + + + +
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE 215
Query: 106 THIINGKQVEI----------KRTIP---------RGA-VGSKDFKTKKIFVGGIPSNVT 145
+NG+ K +P +GA G D IFVGG+ +NVT
Sbjct: 216 ---MNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVT 272
Query: 146 EDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVE 205
+DE + F ++GE+ +I + GF+ + ++ + + LS+ N G +
Sbjct: 273 DDELKSIFGQFGELLHVKI------PPGKRCGFVQYANKASAEHALSVLNGTQLGGQSIR 326
Query: 206 I 206
+
Sbjct: 327 L 327
>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 88/176 (50%), Gaps = 21/176 (11%)
Query: 41 GASPG--KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSV 98
GA P +++ L +E T + K FGKYG+I+ +V+MKD ++ R FGF+ + P
Sbjct: 233 GAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNFVSPEA 291
Query: 99 VDKVIEDTHII---------------NGKQVEIKRTIPRGAVGS-KDFKTKKIFVGGIPS 142
+E + I + ++ E++R + + + + +++ +
Sbjct: 292 AAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDD 351
Query: 143 NVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITF-DSEDAVDDLLSMGNKI 197
+V +++ ++ F+ YG V ++M + S SRGFGF+ + + E+A+ + M K+
Sbjct: 352 SVNDEKLKEMFSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPEEALLAMKEMNGKM 406
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 79/173 (45%), Gaps = 22/173 (12%)
Query: 45 GKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE 104
G +FI L + F +G I + D + +G+GF+ + I+
Sbjct: 146 GNVFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAID 204
Query: 105 DTH--IINGKQVEIKRTIPR--------GAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFT 154
+ ++N KQV + + R GAV S ++V +P +T+DE + F
Sbjct: 205 KLNGMLLNDKQVFVGHFVRRQDRARSESGAVPS----FTNVYVKNLPKEITDDELKKTFG 260
Query: 155 RYGEVKDNQIMRDHSTNRSRGFGFITFDSED----AVDDL--LSMGNKIDFAG 201
+YG++ +M+D S N SR FGF+ F S + AV+ + +S+G + + G
Sbjct: 261 KYGDISSAVVMKDQSGN-SRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVG 312
>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 88/176 (50%), Gaps = 21/176 (11%)
Query: 41 GASPG--KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSV 98
GA P +++ L +E T + K FGKYG+I+ +V+MKD ++ R FGF+ + P
Sbjct: 233 GAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNFVSPEA 291
Query: 99 VDKVIEDTHII---------------NGKQVEIKRTIPRGAVGS-KDFKTKKIFVGGIPS 142
+E + I + ++ E++R + + + + +++ +
Sbjct: 292 AAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDD 351
Query: 143 NVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITF-DSEDAVDDLLSMGNKI 197
+V +++ ++ F+ YG V ++M + S SRGFGF+ + + E+A+ + M K+
Sbjct: 352 SVNDEKLKEMFSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPEEALLAMKEMNGKM 406
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 79/173 (45%), Gaps = 22/173 (12%)
Query: 45 GKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE 104
G +FI L + F +G I + D + +G+GF+ + I+
Sbjct: 146 GNVFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAID 204
Query: 105 DTH--IINGKQVEIKRTIPR--------GAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFT 154
+ ++N KQV + + R GAV S ++V +P +T+DE + F
Sbjct: 205 KLNGMLLNDKQVFVGHFVRRQDRARSESGAVPS----FTNVYVKNLPKEITDDELKKTFG 260
Query: 155 RYGEVKDNQIMRDHSTNRSRGFGFITFDSED----AVDDL--LSMGNKIDFAG 201
+YG++ +M+D S N SR FGF+ F S + AV+ + +S+G + + G
Sbjct: 261 KYGDISSAVVMKDQSGN-SRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVG 312
>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031554-8033517 REVERSE LENGTH=363
Length = 363
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 77/149 (51%), Gaps = 14/149 (9%)
Query: 47 IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIEDT 106
+++GGL + + + F + G + + + KDR T + +GFI Y D I+
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 107 HII--NGKQVEIKRTIPRGAVGSKDFKT----KKIFVGGIPSNVTEDEFRDFFTRYGEVK 160
++I +GK + + + S+D K+ +F+G + +V E D F+ +G +
Sbjct: 87 NMIKLHGKPIRVNK-------ASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIA 139
Query: 161 DN-QIMRDHSTNRSRGFGFITFDSEDAVD 188
N +IMRD T SRGFGFI++DS +A D
Sbjct: 140 SNPKIMRDPDTGNSRGFGFISYDSFEASD 168
>AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 21/190 (11%)
Query: 35 QPLTGDGASPG--KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFIT 92
+P D +S +++IG + R T Q K ++G + +M D+ + + R FGF T
Sbjct: 64 KPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFAT 123
Query: 93 YADPSVVDKVIEDTHIINGKQVE---IKRTIPRGAVGSK-DFKTK------------KIF 136
+ V+E +NG VE IK I + S D K++
Sbjct: 124 MKSVEDANAVVEK---LNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVY 180
Query: 137 VGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNK 196
VG + VT++ + F+ G+V ++ R T++S GFGF+TF SE+ V+ + N
Sbjct: 181 VGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNN 240
Query: 197 IDFAGTQVEI 206
G ++ +
Sbjct: 241 SLLEGQKIRV 250
>AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 21/190 (11%)
Query: 35 QPLTGDGASPG--KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFIT 92
+P D +S +++IG + R T Q K ++G + +M D+ + + R FGF T
Sbjct: 64 KPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFAT 123
Query: 93 YADPSVVDKVIEDTHIINGKQVE---IKRTIPRGAVGSK-DFKTK------------KIF 136
+ V+E +NG VE IK I + S D K++
Sbjct: 124 MKSVEDANAVVEK---LNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVY 180
Query: 137 VGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNK 196
VG + VT++ + F+ G+V ++ R T++S GFGF+TF SE+ V+ + N
Sbjct: 181 VGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNN 240
Query: 197 IDFAGTQVEI 206
G ++ +
Sbjct: 241 SLLEGQKIRV 250
>AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 76/162 (46%), Gaps = 11/162 (6%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
KIF+ GL +T I F +YGEI D + D+ + Q +G+GFI + S ++
Sbjct: 129 KIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQ 188
Query: 106 THIINGKQVEIKRTIPRGAVG-------SKDFK----TKKIFVGGIPSNVTEDEFRDFFT 154
G ++ + G V ++ F +KI+V + +++ + +FF+
Sbjct: 189 PQKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFFS 248
Query: 155 RYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNK 196
R+GE+++ + D +T R +GF + S ++ L +K
Sbjct: 249 RFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHK 290
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 125 VGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSE 184
V +D +KIFV G+ + D D F +YGE++D + + D + +S+G+GFI F S
Sbjct: 120 VADEDLVHRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSR 179
Query: 185 DAVDDLLSMGNK 196
+ L K
Sbjct: 180 SGARNALKQPQK 191
>AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 76/162 (46%), Gaps = 11/162 (6%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
KIF+ GL +T I F +YGEI D + D+ + Q +G+GFI + S ++
Sbjct: 129 KIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQ 188
Query: 106 THIINGKQVEIKRTIPRGAVG-------SKDFK----TKKIFVGGIPSNVTEDEFRDFFT 154
G ++ + G V ++ F +KI+V + +++ + +FF+
Sbjct: 189 PQKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFFS 248
Query: 155 RYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNK 196
R+GE+++ + D +T R +GF + S ++ L +K
Sbjct: 249 RFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHK 290
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 125 VGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSE 184
V +D +KIFV G+ + D D F +YGE++D + + D + +S+G+GFI F S
Sbjct: 120 VADEDLVHRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSR 179
Query: 185 DAVDDLLSMGNK 196
+ L K
Sbjct: 180 SGARNALKQPQK 191
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%)
Query: 128 KDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAV 187
+ + K+F+GG+ ++ ED R+ FT+YGEV D +++ D T RSRGFGF+TF S +A
Sbjct: 35 RCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAA 94
Query: 188 DDLLSMGNKIDFAGTQVEI 206
+ + D G V++
Sbjct: 95 SSAIQALDGRDLHGRVVKV 113
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 43 SPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKV 102
S K+FIGG+A + F KYGE+ D+ ++ DR+T + RGFGF+T+
Sbjct: 38 SSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSA 97
Query: 103 IE--DTHIINGKQVEI 116
I+ D ++G+ V++
Sbjct: 98 IQALDGRDLHGRVVKV 113
>AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352842-354965 FORWARD LENGTH=467
Length = 467
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 19/164 (11%)
Query: 26 EDHDQHHNSQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQP 85
ED +++ + L G+ ++FIGGL R+ + GEI + +MKDR +
Sbjct: 80 EDREKYSHLLSLPPHGS---EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDS 136
Query: 86 RGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPRGAVGSKDFKTK-KIFVGGIPSNV 144
+G+ F+ + V K IE+ H K I+ ++ +TK ++F+G IP N
Sbjct: 137 KGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSL---------SETKNRLFIGNIPKNW 187
Query: 145 TEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVD 188
TEDEFR G +T R+RGF F+ + + D
Sbjct: 188 TEDEFRKVIEDVGPGDPT------NTTRNRGFAFVLYYNNACAD 225
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 41/73 (56%)
Query: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSM 193
++F+GG+P +V E++ RD GE+ + ++M+D + S+G+ F+ F ++D +
Sbjct: 97 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 156
Query: 194 GNKIDFAGTQVEI 206
+ +F G +
Sbjct: 157 LHSKEFKGKTIRC 169
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 80/168 (47%), Gaps = 24/168 (14%)
Query: 47 IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIEDT 106
+++ L+ TT + FG+YG I+ +V+M+D + R FGF+ + +P + +E
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFENPEDAARAVE-- 283
Query: 107 HIINGK------------------QVEIKRTIPRGAV-GSKDFKTKKIFVGGIPSNVTED 147
+NGK ++E+ R +G+ G F ++V + VT++
Sbjct: 284 -ALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDE 342
Query: 148 EFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGN 195
+ R+ F +G + ++MRD S S+G GF+ F + +L+ N
Sbjct: 343 KLRELFAEFGTITSCKVMRDPS-GTSKGSGFVAFSAASEASRVLNEMN 389
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 71/151 (47%), Gaps = 5/151 (3%)
Query: 47 IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIEDT 106
+++G L T +Q +F + ++ + +D T G+G++ Y++ +K ++
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 107 H--IINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQI 164
+ +NGK + I T ++ +FV + +V + F+ G + ++
Sbjct: 108 NYSYLNGKMIRI--TYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKV 165
Query: 165 MRDHSTNRSRGFGFITFDSEDAVDDLLSMGN 195
DH +SRG+GF+ FD+ED+ + + N
Sbjct: 166 ATDH-MGQSRGYGFVQFDTEDSAKNAIEKLN 195
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 10/161 (6%)
Query: 45 GKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE 104
G +F+ L + + F G I + D Q RG+GF+ + IE
Sbjct: 134 GNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDH-MGQSRGYGFVQFDTEDSAKNAIE 192
Query: 105 DTH--IINGKQVEI---KRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEV 159
+ ++N KQ+ + R R + K K ++V + T+DE + F +YG +
Sbjct: 193 KLNGKVLNDKQIFVGPFLRKEERESAADK-MKFTNVYVKNLSEATTDDELKTTFGQYGSI 251
Query: 160 KDNQIMRDHSTNRSRGFGFITFDS-EDAVDDLLSM-GNKID 198
+MRD +SR FGF+ F++ EDA + ++ G K D
Sbjct: 252 SSAVVMRD-GDGKSRCFGFVNFENPEDAARAVEALNGKKFD 291
>AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:28686932-28688506 REVERSE LENGTH=285
Length = 285
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
K+F+GGLA ET +HF +YGEI ++V++ D+ T + +G+GF+T+ DP + D
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84
Query: 106 -THIINGKQVEI 116
T II+G++
Sbjct: 85 PTPIIDGRRANC 96
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 129 DFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAV 187
D K+FVGG+ + R F +YGE+ + ++ D +T RS+G+GF+TF +A
Sbjct: 20 DTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAA 78
>AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 74/168 (44%), Gaps = 17/168 (10%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
KIF+ GL +T I+ F +YGEI D + D+ + + +G+GFI Y S ++
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
Query: 106 THIINGKQVEIKRTIPRGAV-----------------GSKDFKTKKIFVGGIPSNVTEDE 148
G ++ + +G V + + KKI+V + + + +
Sbjct: 201 PQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQK 260
Query: 149 FRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNK 196
FF+++GE+++ + D T R +GF + S ++ L +K
Sbjct: 261 LLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHK 308
>AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 74/168 (44%), Gaps = 17/168 (10%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
KIF+ GL +T I+ F +YGEI D + D+ + + +G+GFI Y S ++
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
Query: 106 THIINGKQVEIKRTIPRGAV-----------------GSKDFKTKKIFVGGIPSNVTEDE 148
G ++ + +G V + + KKI+V + + + +
Sbjct: 201 PQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQK 260
Query: 149 FRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNK 196
FF+++GE+++ + D T R +GF + S ++ L +K
Sbjct: 261 LLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHK 308
>AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 74/168 (44%), Gaps = 17/168 (10%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
KIF+ GL +T I+ F +YGEI D + D+ + + +G+GFI Y S ++
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
Query: 106 THIINGKQVEIKRTIPRGAV-----------------GSKDFKTKKIFVGGIPSNVTEDE 148
G ++ + +G V + + KKI+V + + + +
Sbjct: 201 PQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQK 260
Query: 149 FRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNK 196
FF+++GE+++ + D T R +GF + S ++ L +K
Sbjct: 261 LLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHK 308
>AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 74/168 (44%), Gaps = 17/168 (10%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
KIF+ GL +T I+ F +YGEI D + D+ + + +G+GFI Y S ++
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
Query: 106 THIINGKQVEIKRTIPRGAV-----------------GSKDFKTKKIFVGGIPSNVTEDE 148
G ++ + +G V + + KKI+V + + + +
Sbjct: 201 PQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQK 260
Query: 149 FRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNK 196
FF+++GE+++ + D T R +GF + S ++ L +K
Sbjct: 261 LLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHK 308
>AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 74/168 (44%), Gaps = 17/168 (10%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
KIF+ GL +T I+ F +YGEI D + D+ + + +G+GFI Y S ++
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
Query: 106 THIINGKQVEIKRTIPRGAV-----------------GSKDFKTKKIFVGGIPSNVTEDE 148
G ++ + +G V + + KKI+V + + + +
Sbjct: 201 PQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQK 260
Query: 149 FRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNK 196
FF+++GE+++ + D T R +GF + S ++ L +K
Sbjct: 261 LLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHK 308
>AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDK-VIE 104
K+F+GGLA ET +HF +YG+I ++V++ D+ T + +G+GF+T+ DP + ++
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 105 DTHIINGKQVEI 116
T II+G++
Sbjct: 85 PTPIIDGRRANC 96
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 129 DFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAV 187
D K+FVGG+ + R F +YG++ + ++ D +T RS+G+GF+TF +A
Sbjct: 20 DTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAA 78
>AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDK-VIE 104
K+F+GGLA ET +HF +YG+I ++V++ D+ T + +G+GF+T+ DP + ++
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 105 DTHIINGKQVEI 116
T II+G++
Sbjct: 85 PTPIIDGRRANC 96
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 129 DFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAV 187
D K+FVGG+ + R F +YG++ + ++ D +T RS+G+GF+TF +A
Sbjct: 20 DTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAA 78
>AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Query: 40 DGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVV 99
DG +IF+GGL+ + T Q F +YG+IT+ IM R T +PRGFGFIT+ D
Sbjct: 7 DGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGA 66
Query: 100 DKVIEDTH--IINGKQVEIKRTIPRGAVGSKDFKTKK 134
D I+ H + K + + + P+ VG +D K
Sbjct: 67 DDAIKHMHGRELGNKVISVNKAEPK--VGGEDVDQLK 101
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLL-- 191
+IFVGG+ +VTE + F RYG++ + QIM T R RGFGFITF DD +
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 192 ----SMGNKI 197
+GNK+
Sbjct: 73 MHGRELGNKV 82
>AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Query: 40 DGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVV 99
DG +IF+GGL+ + T Q F +YG+IT+ IM R T +PRGFGFIT+ D
Sbjct: 7 DGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGA 66
Query: 100 DKVIEDTH--IINGKQVEIKRTIPRGAVGSKDFKTKK 134
D I+ H + K + + + P+ VG +D K
Sbjct: 67 DDAIKHMHGRELGNKVISVNKAEPK--VGGEDVDQLK 101
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLL-- 191
+IFVGG+ +VTE + F RYG++ + QIM T R RGFGFITF DD +
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 192 ----SMGNKI 197
+GNK+
Sbjct: 73 MHGRELGNKV 82
>AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr5:1192461-1195413 FORWARD LENGTH=310
Length = 310
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
+IF+GGL+ E T + F ++G+I D IM +R T + RGFGFIT+AD +D+ I +
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 106 TH--IINGKQVEIKRTIPR 122
H + + + R P+
Sbjct: 68 MHGRDFGDRVISVNRAEPK 86
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%)
Query: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSM 193
+IFVGG+ VT+ + F+R+G++ D QIM + T RSRGFGFITF A+D+ +
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 194 GNKIDFAGTQVEI 206
+ DF + +
Sbjct: 68 MHGRDFGDRVISV 80
>AT3G54770.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:20273863-20275827 REVERSE LENGTH=261
Length = 261
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
K+F+GGLA +T HF KYG+I ++VI+ D+ T + +G+GF+T+ D + ED
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACED 77
Query: 106 -THIINGKQVEI 116
T IING++
Sbjct: 78 STPIINGRRANC 89
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 129 DFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAV 187
D K K+FVGG+ + ++ D F +YG++ + I+ D T RS+G+GF+TF A
Sbjct: 13 DTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAA 71
>AT2G43410.1 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=858
Length = 858
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 67/127 (52%), Gaps = 17/127 (13%)
Query: 47 IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTA-QPRGFGFITY--ADPSVVDKVI 103
+++G L ETT + + FG+YG+I DR T RGF FI Y + +V K
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDI-------DRITVYSSRGFAFIYYRHVEEAVAAKEA 72
Query: 104 EDTHIINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQ 163
+NG Q++I+ P K ++VGGI NV++D+ + F+++G+++D +
Sbjct: 73 LQGANLNGSQIKIEYARPAKPC-------KSLWVGGIGPNVSKDDLEEEFSKFGKIEDFR 125
Query: 164 IMRDHST 170
+R+ T
Sbjct: 126 FLRERKT 132
>AT2G43410.4 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 67/127 (52%), Gaps = 17/127 (13%)
Query: 47 IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTA-QPRGFGFITY--ADPSVVDKVI 103
+++G L ETT + + FG+YG+I DR T RGF FI Y + +V K
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDI-------DRITVYSSRGFAFIYYRHVEEAVAAKEA 72
Query: 104 EDTHIINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQ 163
+NG Q++I+ P K ++VGGI NV++D+ + F+++G+++D +
Sbjct: 73 LQGANLNGSQIKIEYARPAKPC-------KSLWVGGIGPNVSKDDLEEEFSKFGKIEDFR 125
Query: 164 IMRDHST 170
+R+ T
Sbjct: 126 FLRERKT 132
>AT2G43410.3 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 67/127 (52%), Gaps = 17/127 (13%)
Query: 47 IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTA-QPRGFGFITY--ADPSVVDKVI 103
+++G L ETT + + FG+YG+I DR T RGF FI Y + +V K
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDI-------DRITVYSSRGFAFIYYRHVEEAVAAKEA 72
Query: 104 EDTHIINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQ 163
+NG Q++I+ P K ++VGGI NV++D+ + F+++G+++D +
Sbjct: 73 LQGANLNGSQIKIEYARPAKPC-------KSLWVGGIGPNVSKDDLEEEFSKFGKIEDFR 125
Query: 164 IMRDHST 170
+R+ T
Sbjct: 126 FLRERKT 132
>AT2G43410.2 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 67/127 (52%), Gaps = 17/127 (13%)
Query: 47 IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTA-QPRGFGFITY--ADPSVVDKVI 103
+++G L ETT + + FG+YG+I DR T RGF FI Y + +V K
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDI-------DRITVYSSRGFAFIYYRHVEEAVAAKEA 72
Query: 104 EDTHIINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQ 163
+NG Q++I+ P K ++VGGI NV++D+ + F+++G+++D +
Sbjct: 73 LQGANLNGSQIKIEYARPAKPC-------KSLWVGGIGPNVSKDDLEEEFSKFGKIEDFR 125
Query: 164 IMRDHST 170
+R+ T
Sbjct: 126 FLRERKT 132
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 83/186 (44%), Gaps = 25/186 (13%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE- 104
K+F+G L AQ + F G + ++ D+ T + RGFGF+T + S V+ +
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 105 -DTHIINGKQVEIKRTIP---------RGA--------------VGSKDFKTKKIFVGGI 140
+ + ++G+ + + P RG GS +++VG +
Sbjct: 152 FNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNL 211
Query: 141 PSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFA 200
V + F+ G+V + +++ D + RS+GFGF+T+DS V + + + D
Sbjct: 212 SWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLD 271
Query: 201 GTQVEI 206
G Q+ +
Sbjct: 272 GRQIRV 277
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 91/193 (47%), Gaps = 26/193 (13%)
Query: 22 YSHREDHDQHHNSQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRK 81
+ R++ D N T +++ LA TT FG+YG+IT +V+MKD +
Sbjct: 199 FLRRQERDSTANKTKFT-------NVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE 251
Query: 82 TAQPRGFGFITYADPSVVDKVIEDT--HIINGKQVEIKRTIPRG--------------AV 125
+ +GFGF+ + + + +E H + K+ + R +
Sbjct: 252 -GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKE 310
Query: 126 GSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDS-E 184
+ F++ ++V + ++++++ ++ F+ +G V +++MRD S+G GF+ F + E
Sbjct: 311 AADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRD-PNGTSKGSGFVAFATPE 369
Query: 185 DAVDDLLSMGNKI 197
+A + + + K+
Sbjct: 370 EATEAMSQLSGKM 382
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/185 (20%), Positives = 84/185 (45%), Gaps = 20/185 (10%)
Query: 34 SQPLTGDGASPGK-----IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGF 88
S P T GA+ + +++G L T +Q FG+ G + + +D T + G+
Sbjct: 20 SAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGY 79
Query: 89 GFITYADPSVVDKVIEDTHIIN--GKQVEIK-----RTIPRGAVGSKDFKTKKIFVGGIP 141
G++ + +P + I++ + I GK + + ++ R G+ IF+ +
Sbjct: 80 GYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGN-------IFIKNLD 132
Query: 142 SNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAG 201
++ D F+ +G + ++ D S+ +S+G+GF+ + +E++ + N +
Sbjct: 133 ESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLND 191
Query: 202 TQVEI 206
QV +
Sbjct: 192 KQVYV 196
>AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=426
Length = 426
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 89/227 (39%), Gaps = 54/227 (23%)
Query: 8 HVVGGGESNDVARTYSHREDHDQHHNSQPLTGDGASPGKIFIGGLARETTIAQFIKHFGK 67
H+ G + A RED H N IF+G L+ E T A F
Sbjct: 124 HIFGQPMKVNWAYATGQREDTSSHFN-------------IFVGDLSPEVTDAALFDSFSA 170
Query: 68 YGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVI------------------------ 103
+ +D+ +M D+KT + RGFGF+++ + I
Sbjct: 171 FNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKGATF 230
Query: 104 -EDTHIINGKQV--------EIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTE-DEFRDFF 153
ED H +GK V E R + + + ++VG + VT+ D R F+
Sbjct: 231 GEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENNPQFTTVYVGNLSPEVTQLDLHRLFY 290
Query: 154 TR-YGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDF 199
T G +++ ++ RD +GFGF+ +++ D + MGN F
Sbjct: 291 TLGAGVIEEVRVQRD------KGFGFVRYNTHDEAALAIQMGNAQPF 331
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 76/171 (44%), Gaps = 22/171 (12%)
Query: 35 QPLTGDGASPG-------KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRG 87
+PL PG ++ G + + T + F G I +++ K++
Sbjct: 46 EPLPSGNLPPGFDPTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS---- 101
Query: 88 FGFITYADPSVVDKVIEDTHIINGKQV--EIKRTIPRGAVGSKDFKTK--KIFVGGIPSN 143
+GF+ Y D I +NG+ + + + A G ++ + IFVG +
Sbjct: 102 YGFVHYFDRRCASMAI---MTLNGRHIFGQPMKVNWAYATGQREDTSSHFNIFVGDLSPE 158
Query: 144 VTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITF----DSEDAVDDL 190
VT+ D F+ + D ++M D T RSRGFGF++F D++ A++++
Sbjct: 159 VTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 209
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 125 VGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSE 184
+GS + + K+FVGG+ + + FT +GEV + ++ D T RSRGFGF++F E
Sbjct: 27 LGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCE 86
Query: 185 DAVDDLLSMGNKIDFAGTQVEI 206
D+ ++ + + + G Q+ +
Sbjct: 87 DSANNAIKEMDGKELNGRQIRV 108
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE- 104
K+F+GGL+ T + + F +GE+T++ ++ DR+T + RGFGF++++ + I+
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 105 -DTHIINGKQVEIKRTIPRGAVGSKDF 130
D +NG+Q+ + R + F
Sbjct: 96 MDGKELNGRQIRVNLATERSSAPRSSF 122
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 125 VGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSE 184
+GS + + K+FVGG+ + + FT +GEV + ++ D T RSRGFGF++F E
Sbjct: 27 LGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCE 86
Query: 185 DAVDDLLSMGNKIDFAGTQVEI 206
D+ ++ + + + G Q+ +
Sbjct: 87 DSANNAIKEMDGKELNGRQIRV 108
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE- 104
K+F+GGL+ T + + F +GE+T++ ++ DR+T + RGFGF++++ + I+
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 105 -DTHIINGKQVEIKRTIPRGAVGSKDF 130
D +NG+Q+ + R + F
Sbjct: 96 MDGKELNGRQIRVNLATERSSAPRSSF 122
>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
chr1:8055599-8058799 FORWARD LENGTH=660
Length = 660
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 10/162 (6%)
Query: 45 GKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE 104
G IFI L + F +G I + D T + +G+GF+ + I+
Sbjct: 136 GNIFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAID 194
Query: 105 DTH--IINGKQVEIKRTIPRGAVGSKDFKTK-----KIFVGGIPSNVTEDEFRDFFTRYG 157
+ ++N KQV + I R ++D T ++V +P + EDE R F ++G
Sbjct: 195 KLNGMLMNDKQVFVGHFI-RRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFG 253
Query: 158 EVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDF 199
+ +MRD S N SR FGF+ F+ +A + N I
Sbjct: 254 VISSAVVMRDQSGN-SRCFGFVNFECTEAAASAVEKMNGISL 294
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 47 IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIEDT 106
+++ L +E + K FGK+G I+ +V+M+D ++ R FGF+ + +E
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVNFECTEAAASAVEKM 289
Query: 107 HIIN---------------GKQVEIKRTIPRGAVGS-KDFKTKKIFVGGIPSNVTEDEFR 150
+ I+ ++ E++R + + + + +++ + +V +++ +
Sbjct: 290 NGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLK 349
Query: 151 DFFTRYGEVKDNQIMRDHSTNRSRGFGFITF-DSEDAVDDLLSMGNKI 197
+ F+ YG V +++M + SRGFGF+ + + E+A+ L M K+
Sbjct: 350 EMFSEYGNVTSSKVMLN-PQGMSRGFGFVAYSNPEEALRALSEMNGKM 396
>AT2G44710.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:18432902-18436629 FORWARD LENGTH=809
Length = 809
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 76/149 (51%), Gaps = 16/149 (10%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
+IF+G L + + K FG GE+T+ I+K+ +T + +G F+ +A + +++
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKE 274
Query: 106 --THIINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYG--EVKD 161
+ +INGK+ G S+D T +FVG I T + R+ YG + D
Sbjct: 275 LKSPMINGKKC--------GVTASQDNDT--LFVGNICKIWTPEALREKLKHYGVENMDD 324
Query: 162 NQIMRD-HSTNRSRGFGFITFDSE-DAVD 188
++ D ++ N +RG+ F+ F S DA+D
Sbjct: 325 ITLVEDSNNVNMNRGYAFLEFSSRSDAMD 353
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 73/151 (48%), Gaps = 11/151 (7%)
Query: 47 IFIGGLARETT---IAQFIKHFGKYGEITDSVIMKDRKTAQ-PRGFGFITYA---DPSVV 99
+F+G + + T + + +KH+G + D +++D RG+ F+ ++ D
Sbjct: 296 LFVGNICKIWTPEALREKLKHYG-VENMDDITLVEDSNNVNMNRGYAFLEFSSRSDAMDA 354
Query: 100 DKVIEDTHIINGKQVEIKRTIPRGAVGSKD---FKTKKIFVGGIPSNVTEDEFRDFFTRY 156
K + ++ G + K + + +D + K IF+ G+ + E+ RD Y
Sbjct: 355 HKRLVKKDVMFGVEKPAKVSFTDSFLDLEDEIMAQVKTIFIDGLLPSWNEERVRDLLKPY 414
Query: 157 GEVKDNQIMRDHSTNRSRGFGFITFDSEDAV 187
G+++ ++ R+ + R + FGF+TFD+ +A
Sbjct: 415 GKLEKVELARNMPSARRKDFGFVTFDTHEAA 445
>AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 |
chr3:5558676-5560993 REVERSE LENGTH=537
Length = 537
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 69/154 (44%), Gaps = 17/154 (11%)
Query: 47 IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIEDT 106
+++ L T F +YG ++ V+M+D + RGFGF+ + +P K +E
Sbjct: 204 VYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPENAKKAMESL 262
Query: 107 --------HIINGKQVE-------IKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRD 151
+ GK ++ +K+ + + + ++V + ++ E R+
Sbjct: 263 CGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLRE 322
Query: 152 FFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSED 185
F YG++ ++M H RS+GFGF+ F + +
Sbjct: 323 IFGCYGQIVSAKVM-CHENGRSKGFGFVCFSNCE 355
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 82/173 (47%), Gaps = 17/173 (9%)
Query: 45 GKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE 104
+++ L T + + F +G I ++++ Q +GFGF+ +
Sbjct: 112 ANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEE--NGQSKGFGFVQFDTEQSAVSARS 169
Query: 105 DTH--IINGKQVEIKRTIPR----GAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGE 158
H ++ GK++ + + I + G++D + ++V + VT+D F++YG
Sbjct: 170 ALHGSMVYGKKLFVAKFINKDERAAMAGNQD--STNVYVKNLIETVTDDCLHTLFSQYGT 227
Query: 159 VKDNQIMRDHSTNRSRGFGFITF----DSEDAVDDL--LSMGNKIDFAGTQVE 205
V +MRD RSRGFGF+ F +++ A++ L L +G+K F G ++
Sbjct: 228 VSSVVVMRD-GMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALK 279
>AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=293
Length = 293
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 82/180 (45%), Gaps = 26/180 (14%)
Query: 44 PGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVI 103
P ++++ + R IAQ + F +G + + ++ +T + RG G++T + I
Sbjct: 107 PCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAI 166
Query: 104 E--DTHIINGKQVEIKRTI----------------PRGAVGSKDFKTKKIFVGGIPSNVT 145
D + G+++ ++ ++ P+ + + K++VG +P
Sbjct: 167 ASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYES--QHKVYVGNLPWFTQ 224
Query: 146 EDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVE 205
D R+ F+++G + +++ D T R+R F F++F S + D LS F GTQ E
Sbjct: 225 PDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS------FNGTQYE 278
>AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917941 FORWARD
LENGTH=405
Length = 405
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 83/181 (45%), Gaps = 30/181 (16%)
Query: 47 IFIGGLARETTIAQFIKHF-GKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
IF+G LA + T ++ F Y + + ++ DR T + +G+GF+ ++D S + + +
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 106 THIINGKQVEIK--RTIP----RGAVGSKDF--------------KTKKIFVGGIPSNVT 145
+NG + R P +G G +D +FVGG+ ++VT
Sbjct: 217 ---MNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVT 273
Query: 146 EDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVE 205
+D ++ F++YGE+ +I + GF+ F + ++ L M N + GT V
Sbjct: 274 DDHLKNVFSQYGEIVHVKI------PAGKRCGFVQFSEKSCAEEALRMLNGVQLGGTTVR 327
Query: 206 I 206
+
Sbjct: 328 L 328
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 35 QPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYA 94
QP T D ++IG L F GE+ + ++++++T Q G+GFI +A
Sbjct: 54 QPTTADEIR--TLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFA 111
Query: 95 DPSVVDKVIE---DTHIINGKQVEIKRTIPRGAVGSK--DFKTKKIFVGGIPSNVTEDEF 149
+ ++V++ + I + + + G K D IFVG + ++VT+
Sbjct: 112 SHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYIL 171
Query: 150 RDFF-TRYGEVKDNQIMRDHSTNRSRGFGFITFDSE 184
+ F Y VK +++ D T R++G+GF+ F E
Sbjct: 172 LETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDE 207
>AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7886693-7889241 FORWARD LENGTH=291
Length = 291
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 52/87 (59%), Gaps = 9/87 (10%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
K+F+GGLA ET + ++F ++GEI ++VI+ D+ T + +G+GF+T+ D + + D
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVAD 77
Query: 106 TH-IINGKQVEI--------KRTIPRG 123
+ +I+G++ + + PRG
Sbjct: 78 PNPVIDGRKANCNIASFGRPRPSTPRG 104
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%)
Query: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSM 193
K+FVGG+ DE R +F ++GE+ + I+ D +T +S+G+GF+TF D+ ++
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVAD 77
Query: 194 GNKI 197
N +
Sbjct: 78 PNPV 81
>AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs)
family protein with retrovirus zinc finger-like domain |
chr3:9671953-9673055 FORWARD LENGTH=245
Length = 245
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 45/73 (61%)
Query: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSM 193
+ F+GG+ ++ RD F +YG + + +++ D + RSRGFGFITFD + A+D+ ++
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 194 GNKIDFAGTQVEI 206
N +D G + +
Sbjct: 68 MNGMDLDGRTITV 80
>AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 |
chr1:12433356-12434735 REVERSE LENGTH=407
Length = 407
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 80/170 (47%), Gaps = 22/170 (12%)
Query: 47 IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIEDT 106
+++ L T A + FG++GEIT +V+MKD + + R FGF+ + IE
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKDGE-GKSRRFGFVNFEKAEAAVTAIEKM 179
Query: 107 H--IINGKQVEIKRTIPRGAVGSKDFKTK----------------KIFVGGIPSNVTEDE 148
+ +++ K++ + R R ++D K K ++V + +V +
Sbjct: 180 NGVVVDEKELHVGRA-QRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTK 238
Query: 149 FRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFD-SEDAVDDLLSMGNKI 197
+ F+ +G + ++M HS S+G GF+ F SE+A +L M K+
Sbjct: 239 LEELFSEFGTITSCKVMV-HSNGISKGVGFVEFSTSEEASKAMLKMNGKM 287
>AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=294
Length = 294
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 84/181 (46%), Gaps = 27/181 (14%)
Query: 44 PGKIFIGGLARETTIAQFIKHFGKYGE-ITDSVIMKDRKTAQPRGFGFITYADPSVVDKV 102
P ++++ + R IAQ + F +G I+ V+ ++ +T + RG G++T +
Sbjct: 107 PCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIA 166
Query: 103 IE--DTHIINGKQVEIKRTI----------------PRGAVGSKDFKTKKIFVGGIPSNV 144
I D + G+++ ++ ++ P+ + + K++VG +P
Sbjct: 167 IASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYES--QHKVYVGNLPWFT 224
Query: 145 TEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQV 204
D R+ F+++G + +++ D T R+R F F++F S + D LS F GTQ
Sbjct: 225 QPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS------FNGTQY 278
Query: 205 E 205
E
Sbjct: 279 E 279
>AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=245
Length = 245
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 56/103 (54%), Gaps = 12/103 (11%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDK-VIE 104
K+F+GGLA ET +F ++G+I ++V++ D+ + + +G+GF+T+ DP K ++
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 105 DTHIINGKQVE-------IKRTIP----RGAVGSKDFKTKKIF 136
+I+G++ ++R+ P G VG + K F
Sbjct: 68 PAPVIDGRRANCNLAAFGVQRSKPSSPIHGHVGGRGMKVTSPF 110
>AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=244
Length = 244
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 56/103 (54%), Gaps = 12/103 (11%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDK-VIE 104
K+F+GGLA ET +F ++G+I ++V++ D+ + + +G+GF+T+ DP K ++
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 105 DTHIINGKQVE-------IKRTIP----RGAVGSKDFKTKKIF 136
+I+G++ ++R+ P G VG + K F
Sbjct: 68 PAPVIDGRRANCNLAAFGVQRSKPSSPIHGHVGGRGMKVTSPF 110
>AT5G09880.1 | Symbols: | Splicing factor, CC1-like |
chr5:3081646-3085179 REVERSE LENGTH=527
Length = 527
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 81/170 (47%), Gaps = 10/170 (5%)
Query: 47 IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIEDT 106
+F + + T + F K G++ D ++ DR + + +G G+I + D V I +
Sbjct: 170 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALS 229
Query: 107 -HIINGKQVEIKRTIPRGAVGSKDFKT--------KKIFVGGIPSNVTEDEFRDFFTRYG 157
+ G+ V +K + + + T +K++VG + N++E + R F +G
Sbjct: 230 GQLFLGQPVMVKPSEAEKNLAQSNSTTVGGTGPADRKLYVGNLHFNMSELQLRQIFEAFG 289
Query: 158 EVKDNQIMRDHSTNRSRGFGFITF-DSEDAVDDLLSMGNKIDFAGTQVEI 206
V+ Q+ D T + +GFGFI F E + +++ K++ AG +++
Sbjct: 290 PVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTIKV 339
>AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protein 6
| chr1:6415226-6416283 FORWARD LENGTH=155
Length = 155
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 40/62 (64%)
Query: 43 SPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKV 102
+P KIF+GGL+ T + + FG +G+I D+V++ DR++ RGFGF+TY V +
Sbjct: 34 TPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNA 93
Query: 103 IE 104
++
Sbjct: 94 MQ 95
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 126 GSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDS-E 184
G+ KIFVGG+ + + ++ F +G++ D ++ D + SRGFGF+T+DS E
Sbjct: 29 GNLSLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIE 88
Query: 185 DAVDDLLSMGNK 196
A + + +M NK
Sbjct: 89 VANNAMQAMQNK 100
>AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:19229516-19231043 FORWARD LENGTH=336
Length = 336
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 127 SKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITF-DSED 185
+ D K KIFVGG+ D R +F ++GE+ + ++ D +T RS+G+GF+TF ++E
Sbjct: 16 TTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEA 75
Query: 186 AVDDLLSMGNKID 198
A+ +M ID
Sbjct: 76 AMRACQNMNPVID 88
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
KIF+GGLA ET ++F ++GEI ++V++ D+ T + +G+GF+T+ + + ++
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQN 82
Query: 106 TH-IINGKQVEI 116
+ +I+G++
Sbjct: 83 MNPVIDGRRANC 94
>AT2G16940.2 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=610
Length = 610
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 82/175 (46%), Gaps = 16/175 (9%)
Query: 47 IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIEDT 106
+F +A T + F + G++ D I+ DR + + RG G++ + D V I +
Sbjct: 233 VFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAIALS 292
Query: 107 -HIINGKQVEIKRT-IPRGAVGSKDFK-------------TKKIFVGGIPSNVTEDEFRD 151
+ G+ V +K + + V S ++++VG + N++ED+ R
Sbjct: 293 GQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMSEDDLRK 352
Query: 152 FFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
F +G V+ Q+ RD T +GFGF+ F + + L++ +++ AG +++
Sbjct: 353 VFESFGSVELVQVPRDE-TGLCKGFGFVQFARLEDARNALNLNGQLEIAGRAIKV 406
>AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=425
Length = 425
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 80/180 (44%), Gaps = 17/180 (9%)
Query: 32 HNSQPLTGDGASPGKI------FIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQP 85
H QP G P + +IG L F + GE+ +++++ T QP
Sbjct: 5 HPPQPPQGSYHHPQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQP 64
Query: 86 RGFGFITYADPSVVDKVIEDTHIINGKQV---EIKRTIPRGAVGSKDF----KTKKIFVG 138
G+GFI + + ++ ++ NG Q+ E+ + + GS IFVG
Sbjct: 65 EGYGFIEFISHAAAERTLQ---TYNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVG 121
Query: 139 GIPSNVTEDEFRDFF-TRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKI 197
+ +VT+ ++ F Y V+ +++ D ST RS+G+GF+ F E + ++ N +
Sbjct: 122 DLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGL 181
>AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=421
Length = 421
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 80/180 (44%), Gaps = 17/180 (9%)
Query: 32 HNSQPLTGDGASPGKI------FIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQP 85
H QP G P + +IG L F + GE+ +++++ T QP
Sbjct: 5 HPPQPPQGSYHHPQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQP 64
Query: 86 RGFGFITYADPSVVDKVIEDTHIINGKQV---EIKRTIPRGAVGSKDF----KTKKIFVG 138
G+GFI + + ++ ++ NG Q+ E+ + + GS IFVG
Sbjct: 65 EGYGFIEFISHAAAERTLQ---TYNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVG 121
Query: 139 GIPSNVTEDEFRDFF-TRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKI 197
+ +VT+ ++ F Y V+ +++ D ST RS+G+GF+ F E + ++ N +
Sbjct: 122 DLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGL 181
>AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:16912511-16913250 REVERSE LENGTH=102
Length = 102
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 132 TKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSE-DAVDDL 190
+ ++FV + + T+ R F+ +G++K+ +++RD T R +GFGFITFDSE DA L
Sbjct: 6 SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65
Query: 191 LSMGNKI 197
S+ KI
Sbjct: 66 KSLDGKI 72
>AT2G16940.1 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=561
Length = 561
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 82/175 (46%), Gaps = 16/175 (9%)
Query: 47 IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIEDT 106
+F +A T + F + G++ D I+ DR + + RG G++ + D V I +
Sbjct: 184 VFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAIALS 243
Query: 107 -HIINGKQVEIKRT-IPRGAVGSKDFK-------------TKKIFVGGIPSNVTEDEFRD 151
+ G+ V +K + + V S ++++VG + N++ED+ R
Sbjct: 244 GQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMSEDDLRK 303
Query: 152 FFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
F +G V+ Q+ RD T +GFGF+ F + + L++ +++ AG +++
Sbjct: 304 VFESFGSVELVQVPRDE-TGLCKGFGFVQFARLEDARNALNLNGQLEIAGRAIKV 357
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 130 FKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDD 189
+ KIFVGGI + E R+ F++YGEV D +I+ D T RSRGF F+TF S + +
Sbjct: 31 MSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASN 90
Query: 190 LLSM 193
+ +
Sbjct: 91 AMQL 94
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 18 VARTYSHREDHDQHHNSQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIM 77
V R +S H +S + S KIF+GG++ T + F KYGE+ D+ I+
Sbjct: 7 VGRLFSQTSSHVTASSSMLQSIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKII 66
Query: 78 KDRKTAQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIK 117
DR+T + RGF F+T+ ++ D ++G+++ +
Sbjct: 67 VDRETGRSRGFAFVTFTSTEEASNAMQLDGQDLHGRRIRVN 107
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
+ F+GGLA T + F ++G++ DS I+ DR++ + RGFGF+T+ D + IE+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 106 THIINGKQVE 115
+NGK+++
Sbjct: 67 ---MNGKELD 73
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 44/73 (60%)
Query: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSM 193
+ FVGG+ +++ + F+++G+V D++I+ D + RSRGFGF+TF E A+ D +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 194 GNKIDFAGTQVEI 206
N + G + +
Sbjct: 67 MNGKELDGRVITV 79
>AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29450181 FORWARD LENGTH=287
Length = 287
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
K+F+GGLA ET + ++F ++GEI ++VI+ D+ T + +G+GF+T+ + + + D
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 106 TH-IINGKQVEI 116
+ +I+G++
Sbjct: 78 PNPVIDGRKANC 89
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%)
Query: 129 DFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVD 188
D K+FVGG+ DE R +F ++GE+ + I+ D +T +S+G+GF+TF D+
Sbjct: 13 DTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSAT 72
Query: 189 DLLSMGNKI 197
++ N +
Sbjct: 73 RAVADPNPV 81
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 47 IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYAD----PSVVD-- 100
+++ L+ + + K FG++G T VIM+D + + +GFGF+ + + VD
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVDAL 284
Query: 101 --KVIEDTHIINGK-------QVEIKRTIPRGAVGSKD-FKTKKIFVGGIPSNVTEDEFR 150
K +D GK + E+K+ + + D + ++V + +VT+D+ R
Sbjct: 285 NGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLR 344
Query: 151 DFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDS-EDAVDDLLSMGNKI 197
+ F +G + ++MRD S SRG GF+ F + E+A + M K+
Sbjct: 345 EHFAPFGTITSCKVMRDPS-GVSRGSGFVAFSTPEEATRAITEMNGKM 391
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/167 (19%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 47 IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIEDT 106
+++G L T +Q + F + G++ + +D T + G+G++ YA P + + +
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 107 HI--INGKQVEIKRTIPRGAVGSKDFKTKK-----IFVGGIPSNVTEDEFRDFFTRYGEV 159
+ +NG+ + + ++ +D +K IF+ + ++ + F+ +G +
Sbjct: 107 NFMALNGRAIRVMYSV-------RDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPI 159
Query: 160 KDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
++ D S +S+G+GF+ +D+++A + N + QV +
Sbjct: 160 LSCKVAVDPS-GQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 47 IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYAD----PSVVD-- 100
+++ L+ + + K FG++G T VIM+D + + +GFGF+ + + VD
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVDAL 284
Query: 101 --KVIEDTHIINGK-------QVEIKRTIPRGAVGSKD-FKTKKIFVGGIPSNVTEDEFR 150
K +D GK + E+K+ + + D + ++V + +VT+D+ R
Sbjct: 285 NGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLR 344
Query: 151 DFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDS-EDAVDDLLSMGNKI 197
+ F +G + ++MRD S SRG GF+ F + E+A + M K+
Sbjct: 345 EHFAPFGTITSCKVMRDPS-GVSRGSGFVAFSTPEEATRAITEMNGKM 391
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/167 (19%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 47 IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIEDT 106
+++G L T +Q + F + G++ + +D T + G+G++ YA P + + +
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 107 HI--INGKQVEIKRTIPRGAVGSKDFKTKK-----IFVGGIPSNVTEDEFRDFFTRYGEV 159
+ +NG+ + + ++ +D +K IF+ + ++ + F+ +G +
Sbjct: 107 NFMALNGRAIRVMYSV-------RDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPI 159
Query: 160 KDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
++ D S +S+G+GF+ +D+++A + N + QV +
Sbjct: 160 LSCKVAVDPS-GQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
>AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107618 FORWARD LENGTH=242
Length = 242
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVV-DKVIE 104
K+F+GGLA ET KHF ++GEI ++V++ D+ + + +G+GF+T+ + ++
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 105 DTHIINGKQVEI 116
T +I+G++
Sbjct: 74 ATPVIDGRRANC 85
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%)
Query: 123 GAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFD 182
G +G D K+FVGG+ ++ + F ++GE+ + ++ D ++ RS+G+GF+TF
Sbjct: 3 GGIGLGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFR 62
Query: 183 SEDAV 187
+A
Sbjct: 63 EAEAA 67
>AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107949 FORWARD LENGTH=347
Length = 347
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVV-DKVIE 104
K+F+GGLA ET KHF ++GEI ++V++ D+ + + +G+GF+T+ + ++
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 105 DTHIINGKQVEI 116
T +I+G++
Sbjct: 74 ATPVIDGRRANC 85
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%)
Query: 123 GAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFD 182
G +G D K+FVGG+ ++ + F ++GE+ + ++ D ++ RS+G+GF+TF
Sbjct: 3 GGIGLGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFR 62
Query: 183 SEDAV 187
+A
Sbjct: 63 EAEAA 67
>AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107659 FORWARD LENGTH=249
Length = 249
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVV-DKVIE 104
K+F+GGLA ET KHF ++GEI ++V++ D+ + + +G+GF+T+ + ++
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 105 DTHIINGKQVEI 116
T +I+G++
Sbjct: 74 ATPVIDGRRANC 85
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%)
Query: 123 GAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFD 182
G +G D K+FVGG+ ++ + F ++GE+ + ++ D ++ RS+G+GF+TF
Sbjct: 3 GGIGLGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFR 62
Query: 183 SEDAV 187
+A
Sbjct: 63 EAEAA 67
>AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29449246 FORWARD LENGTH=271
Length = 271
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
K+F+GGLA ET + ++F ++GEI ++VI+ D+ T + +G+GF+T+ + + + D
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 106 TH-IINGKQVEI 116
+ +I+G++
Sbjct: 78 PNPVIDGRKANC 89
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%)
Query: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSM 193
K+FVGG+ DE R +F ++GE+ + I+ D +T +S+G+GF+TF D+ ++
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 194 GNKI 197
N +
Sbjct: 78 PNPV 81
>AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8022601-8023162 FORWARD LENGTH=87
Length = 87
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE- 104
++++G L+ TT + F YG + D+++M+DR T + RGFGF+TY+ S + +
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 105 -DTHIINGKQVEIK 117
D +NG++V +K
Sbjct: 64 MDGKELNGRRVSVK 77
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSM 193
+++VG + T+D R+ F+ YG V D +MRD T+RSRGFGF+T+ S + +S
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 194 GNKIDFAGTQVEI 206
+ + G +V +
Sbjct: 64 MDGKELNGRRVSV 76
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
+ F+GGLA T + F ++G++ DS I+ DR++ + RGFGF+T+ D + IE+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 106 THIINGKQVE 115
+NGK+++
Sbjct: 67 ---MNGKELD 73
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 44/73 (60%)
Query: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSM 193
+ FVGG+ +++ + F+++G+V D++I+ D + RSRGFGF+TF E A+ D +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 194 GNKIDFAGTQVEI 206
N + G + +
Sbjct: 67 MNGKELDGRVITV 79
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
+ F+GGLA T + F ++G++ DS I+ DR++ + RGFGF+T+ D + IE+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 106 THIINGKQVE 115
+NGK+++
Sbjct: 67 ---MNGKELD 73
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 44/73 (60%)
Query: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSM 193
+ FVGG+ +++ + F+++G+V D++I+ D + RSRGFGF+TF E A+ D +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 194 GNKIDFAGTQVEI 206
N + G + +
Sbjct: 67 MNGKELDGRVITV 79
>AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 9/95 (9%)
Query: 112 KQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTN 171
+ VE+ P G+ ++++GGIP++ TE + + F GEV + +IMR+ +
Sbjct: 80 RHVELLALPPHGS---------EVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSG 130
Query: 172 RSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
+G+ F+TF S+D + + N DF G +++
Sbjct: 131 DGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRIKC 165
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 69/140 (49%), Gaps = 14/140 (10%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
++++GG+ + T G GE+T+ IM+++ + +G+ F+T+ + + I+
Sbjct: 93 EVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDT 152
Query: 106 THIIN--GKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGE-VKDN 162
+ + GK+++ T + ++F+G +P N E + + R G V+
Sbjct: 153 LNNTDFRGKRIKCSTTQAK----------HRLFLGNVPRNWMESDIKKAANRIGPGVQIV 202
Query: 163 QIMRD-HSTNRSRGFGFITF 181
++ ++ + R+RGF FI +
Sbjct: 203 ELPKEPQNMGRNRGFAFIEY 222
>AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 9/95 (9%)
Query: 112 KQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTN 171
+ VE+ P G+ ++++GGIP++ TE + + F GEV + +IMR+ +
Sbjct: 80 RHVELLALPPHGS---------EVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSG 130
Query: 172 RSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
+G+ F+TF S+D + + N DF G +++
Sbjct: 131 DGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRIKC 165
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 69/140 (49%), Gaps = 14/140 (10%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
++++GG+ + T G GE+T+ IM+++ + +G+ F+T+ + + I+
Sbjct: 93 EVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDT 152
Query: 106 THIIN--GKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGE-VKDN 162
+ + GK+++ T + ++F+G +P N E + + R G V+
Sbjct: 153 LNNTDFRGKRIKCSTTQAK----------HRLFLGNVPRNWMESDIKKAANRIGPGVQIV 202
Query: 163 QIMRD-HSTNRSRGFGFITF 181
++ ++ + R+RGF FI +
Sbjct: 203 ELPKEPQNMGRNRGFAFIEY 222
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%)
Query: 125 VGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSE 184
+GS + K+F+GG+ + RD F +G+V D +++ D T RSRGFGF+ F+ E
Sbjct: 27 LGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDE 86
Query: 185 DAVDDLLSMGNKIDFAGTQVEI 206
A +S + + G + +
Sbjct: 87 GAATAAISEMDGKELNGRHIRV 108
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE- 104
K+FIGGL+ T A F +G++ D+ ++ DR+T + RGFGF+ + D I
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 105 -DTHIINGKQVEI 116
D +NG+ + +
Sbjct: 96 MDGKELNGRHIRV 108
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%)
Query: 125 VGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSE 184
+GS + K+F+GG+ + RD F +G+V D +++ D T RSRGFGF+ F+ E
Sbjct: 27 LGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDE 86
Query: 185 DAVDDLLSMGNKIDFAGTQVEI 206
A +S + + G + +
Sbjct: 87 GAATAAISEMDGKELNGRHIRV 108
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE- 104
K+FIGGL+ T A F +G++ D+ ++ DR+T + RGFGF+ + D I
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 105 -DTHIINGKQVEI 116
D +NG+ + +
Sbjct: 96 MDGKELNGRHIRV 108
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%)
Query: 125 VGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSE 184
+GS + K+F+GG+ + RD F +G+V D +++ D T RSRGFGF+ F+ E
Sbjct: 27 LGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDE 86
Query: 185 DAVDDLLSMGNKIDFAGTQVEI 206
A +S + + G + +
Sbjct: 87 GAATAAISEMDGKELNGRHIRV 108
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE- 104
K+FIGGL+ T A F +G++ D+ ++ DR+T + RGFGF+ + D I
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 105 -DTHIINGKQVEI 116
D +NG+ + +
Sbjct: 96 MDGKELNGRHIRV 108
>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554983-13557763 REVERSE
LENGTH=415
Length = 415
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 29/180 (16%)
Query: 47 IFIGGLARETTIAQFIKHF-GKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
+F+G LA + T + F Y + + ++ DR T + +G+GF+ +AD S + + +
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTE 234
Query: 106 THIINGKQVEIK--RTIP-----------------RGAVGSKDFKTKKIFVGGIPSNVTE 146
+NG+ + RT P +G G D IFVG + +VTE
Sbjct: 235 ---MNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTE 291
Query: 147 DEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
D+ + F ++GE+ +I + GF+ + + + LS+ N G + +
Sbjct: 292 DDLKSVFGQFGELVHVKI------PAGKRCGFVQYANRACAEQALSVLNGTQLGGQSIRL 345
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 69/144 (47%), Gaps = 6/144 (4%)
Query: 47 IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIEDT 106
++IG L + FG GE T + ++++++ G+GFI + + + ++ ++
Sbjct: 82 LWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTY 141
Query: 107 HIINGKQVEIKRTIPRGAVGSKDFKTKK-----IFVGGIPSNVTEDEFRDFFTR-YGEVK 160
+ E + +G+ + + + +FVG + +VT+ + F Y VK
Sbjct: 142 NGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVK 201
Query: 161 DNQIMRDHSTNRSRGFGFITFDSE 184
+++ D +T RS+G+GF+ F E
Sbjct: 202 GAKVVNDRTTGRSKGYGFVRFADE 225
>AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and
rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159
Length = 159
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSM 193
+ FVGG+ + F +YG+V D++I+ D T RSRGFGF+TF E A+ D +
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 194 GNKIDFAGTQVEI 206
N D G + +
Sbjct: 69 MNGQDLDGRSITV 81
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE 104
+ F+GGLA T F +YG++ DS I+ DR+T + RGFGF+T+ D + IE
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIE 67
>AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold,
circadian rhythm, and rna binding 2 |
chr2:9265477-9266316 REVERSE LENGTH=176
Length = 176
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSM 193
+ FVGG+ + F +YG+V D++I+ D T RSRGFGF+TF E A+ D +
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 194 GNKIDFAGTQVEI 206
N D G + +
Sbjct: 69 MNGQDLDGRSITV 81
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE 104
+ F+GGLA T F +YG++ DS I+ DR+T + RGFGF+T+ D + IE
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIE 67
>AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=430
Length = 430
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 89/231 (38%), Gaps = 58/231 (25%)
Query: 8 HVVGGGESNDVARTYSHREDHDQHHNSQPLTGDGASPGKIFIGGLARETTIAQFIKHFGK 67
H+ G + A RED H N IF+G L+ E T A F
Sbjct: 124 HIFGQPMKVNWAYATGQREDTSSHFN-------------IFVGDLSPEVTDAALFDSFSA 170
Query: 68 YGEIT----DSVIMKDRKTAQPRGFGFITYADPSVVDKVI-------------------- 103
+ + D+ +M D+KT + RGFGF+++ + I
Sbjct: 171 FNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATK 230
Query: 104 -----EDTHIINGKQV--------EIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTE-DEF 149
ED H +GK V E R + + + ++VG + VT+ D
Sbjct: 231 GATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENNPQFTTVYVGNLSPEVTQLDLH 290
Query: 150 RDFFTR-YGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDF 199
R F+T G +++ ++ RD +GFGF+ +++ D + MGN F
Sbjct: 291 RLFYTLGAGVIEEVRVQRD------KGFGFVRYNTHDEAALAIQMGNAQPF 335
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 77/175 (44%), Gaps = 26/175 (14%)
Query: 35 QPLTGDGASPG-------KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRG 87
+PL PG ++ G + + T + F G I +++ K++
Sbjct: 46 EPLPSGNLPPGFDPTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS---- 101
Query: 88 FGFITYADPSVVDKVIEDTHIINGKQV--EIKRTIPRGAVGSKDFKTK--KIFVGGIPSN 143
+GF+ Y D I +NG+ + + + A G ++ + IFVG +
Sbjct: 102 YGFVHYFDRRCASMAI---MTLNGRHIFGQPMKVNWAYATGQREDTSSHFNIFVGDLSPE 158
Query: 144 VTEDEFRDFFTRYGEV----KDNQIMRDHSTNRSRGFGFITF----DSEDAVDDL 190
VT+ D F+ + +D ++M D T RSRGFGF++F D++ A++++
Sbjct: 159 VTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 213
>AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:1878497-1879515 FORWARD LENGTH=146
Length = 146
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSM 193
K+F+GG+ TE + F++ G+V + QI+ D ++RS+GFGF+TF S D L
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKAL-- 92
Query: 194 GNKIDFAGTQV 204
++F G Q+
Sbjct: 93 ---MEFNGQQL 100
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%)
Query: 125 VGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSE 184
+GS + K+F+GG+ + RD F +G+V D +++ D T RSRGFGF+ F+ E
Sbjct: 27 LGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDE 86
Query: 185 DAVDDLLSMGNKIDFAGTQVEI 206
A +S + + G + +
Sbjct: 87 GAATAAISEMDGKELNGRHIRV 108
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE- 104
K+FIGGL+ T A F +G++ D+ ++ DR+T + RGFGF+ + D I
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 105 -DTHIINGKQVEIK 117
D +NG+ + +
Sbjct: 96 MDGKELNGRHIRVN 109
>AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 |
chr5:19203801-19204951 FORWARD LENGTH=212
Length = 212
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%)
Query: 125 VGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSE 184
+GS + + K+++GG+ E +D F+ + V + ++M + T RSRG+GF+ F SE
Sbjct: 23 LGSLRYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISE 82
Query: 185 DAVDDLLSMGNKIDFAGTQVEI 206
D+ + +S N + G + +
Sbjct: 83 DSANSAISAMNGQELNGFNISV 104
>AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B |
chr3:6611398-6613823 REVERSE LENGTH=435
Length = 435
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 80/175 (45%), Gaps = 7/175 (4%)
Query: 39 GDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSV 98
G G +++G L F GE++ +++++ T+Q G+GF+ + +
Sbjct: 102 GSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAA 161
Query: 99 VDKVIEDTH--IINGKQVEIKRTIPRGAVGSK----DFKTKKIFVGGIPSNVTEDEFRDF 152
++V+++ ++ + + G K + +FVG + +VT+ +
Sbjct: 162 AEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHET 221
Query: 153 FT-RYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
F+ RY VK +++ D +T RS+G+GF+ F E+ L+ N + Q+ +
Sbjct: 222 FSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRV 276
>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
chr2:15361476-15364398 REVERSE LENGTH=609
Length = 609
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 80/190 (42%), Gaps = 21/190 (11%)
Query: 24 HREDHDQHHNSQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTA 83
H D +S P+T +++G L T F ++ +T + KD +
Sbjct: 9 HAADASSSGSSSPVTAS------LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSG 62
Query: 84 QPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTIP-----RGAVGSKDFKTKKIF 136
+ +G+ + + IE + ++NGK + + ++ R VG+ +F
Sbjct: 63 RSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGN-------VF 115
Query: 137 VGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNK 196
V +P +VT +D F ++G + ++ +SRG+GF+ F+ EDA + N
Sbjct: 116 VKNLPESVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQFEQEDAAHAAIQTLNS 174
Query: 197 IDFAGTQVEI 206
A ++ +
Sbjct: 175 TIVADKEIYV 184
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 25/144 (17%)
Query: 65 FGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIEDTHIINGKQV--------EI 116
F ++G+I I KD RG+ F+ + +P + E +NG +
Sbjct: 221 FAEFGKIVSLAIAKDENRL-CRGYAFVNFDNPEDARRAAE---TVNGTKFGSKCLYVGRA 276
Query: 117 KRTIPRGAVGSKDFKTK-----------KIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIM 165
++ R + + FK K I+V + VTE+E R F++ G + ++M
Sbjct: 277 QKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLM 336
Query: 166 RDHSTNRSRGFGFITFDS-EDAVD 188
D +S+GFGF+ F + E+A+D
Sbjct: 337 CDEK-GKSKGFGFVCFSTPEEAID 359
>AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=419
Length = 419
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 73/159 (45%), Gaps = 15/159 (9%)
Query: 40 DGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVV 99
D ++ +++G + + T + F G + +++ K++ +GF+ Y D
Sbjct: 49 DPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS----YGFVHYFDRRSA 104
Query: 100 DKVIEDTHIINGKQV---EIKRTIPRGAVGSKDFKTK-KIFVGGIPSNVTEDEFRDFFTR 155
I +NG+ + IK + +D + IFVG + VT+ F+
Sbjct: 105 GLAILS---LNGRHLFGQPIKVNWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSV 161
Query: 156 YGEVKDNQIMRDHSTNRSRGFGFITF----DSEDAVDDL 190
Y D ++M D T RSRGFGF++F D++ A+D++
Sbjct: 162 YPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEI 200
>AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=416
Length = 416
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 73/159 (45%), Gaps = 15/159 (9%)
Query: 40 DGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVV 99
D ++ +++G + + T + F G + +++ K++ +GF+ Y D
Sbjct: 49 DPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS----YGFVHYFDRRSA 104
Query: 100 DKVIEDTHIINGKQV---EIKRTIPRGAVGSKDFKTK-KIFVGGIPSNVTEDEFRDFFTR 155
I +NG+ + IK + +D + IFVG + VT+ F+
Sbjct: 105 GLAILS---LNGRHLFGQPIKVNWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSV 161
Query: 156 YGEVKDNQIMRDHSTNRSRGFGFITF----DSEDAVDDL 190
Y D ++M D T RSRGFGF++F D++ A+D++
Sbjct: 162 YPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEI 200
>AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=105
Length = 105
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
+ F+GGLA T + F ++G++ DS I+ DR++ + RGFGF+T+ D + IE+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 106 TH 107
+
Sbjct: 67 MN 68
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 40/62 (64%)
Query: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSM 193
+ FVGG+ +++ + F+++G+V D++I+ D + RSRGFGF+TF E A+ D +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 194 GN 195
N
Sbjct: 67 MN 68
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 88/200 (44%), Gaps = 24/200 (12%)
Query: 21 TYSHREDHDQHHNSQPLTGDGASPGKIFIGGL---ARETTIAQFIKHFGKYGEITDSVIM 77
T E+ S L A K++ G L T+AQ I+ F E+ + ++
Sbjct: 61 TVKLEEEEKDDGASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFAN-PELVE--VL 117
Query: 78 KDRKTAQPRGFGFITYADPSVVDKVIEDTHII---------NGKQVEIKRT-IPRGAVGS 127
+R T Q RGF F+T ++ +ED +II G+ +++ P+
Sbjct: 118 YNRDTGQSRGFAFVTMSN-------VEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEP 170
Query: 128 KDFKTK-KIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDA 186
+T+ K+FVG + VT + F G+V +++ D T RSRG+GF+ + S+
Sbjct: 171 LYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAE 230
Query: 187 VDDLLSMGNKIDFAGTQVEI 206
++ L + + G + +
Sbjct: 231 METALESLDGFELEGRAIRV 250
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 9/94 (9%)
Query: 120 IPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFI 179
+P+ S + K+F+GG+ +V E +D F+ +GEV + +I D + RSRGFGF+
Sbjct: 28 LPQFCTSSSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFV 87
Query: 180 TFDSE-------DAVD--DLLSMGNKIDFAGTQV 204
F E DA+D LL +I FA +V
Sbjct: 88 DFAEEGDALSAKDAMDGKGLLGRPLRISFALERV 121
>AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47A |
chr1:18357236-18360150 REVERSE LENGTH=445
Length = 445
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/146 (20%), Positives = 68/146 (46%), Gaps = 7/146 (4%)
Query: 47 IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIEDT 106
+++G L F E++ ++++++T Q G+GF+ + S ++ ++
Sbjct: 121 LWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSF 180
Query: 107 HIINGKQVEIKRTIPRGAVGSKDFKTKK------IFVGGIPSNVTEDEFRDFFT-RYGEV 159
+ E + + + + + + IFVG + +V++ + F RY V
Sbjct: 181 SGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSV 240
Query: 160 KDNQIMRDHSTNRSRGFGFITFDSED 185
K +++ D +T RS+G+GF+ F E+
Sbjct: 241 KGAKVVIDSNTGRSKGYGFVRFGDEN 266
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 80/174 (45%), Gaps = 36/174 (20%)
Query: 47 IFIGGLARETTIAQFIKHF-GKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
IF+G LA + + A ++ F G+Y + + ++ D T + +G+GF+ + D + + + +
Sbjct: 215 IFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTE 274
Query: 106 TH--IINGKQVEIKRTIPR-----------------------GAVGSKDFKTKKIFVGGI 140
+ + +Q+ + P+ G++ + IFVGG+
Sbjct: 275 MNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGL 334
Query: 141 PSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITF----DSEDAVDDL 190
++VTE++ F+ +GEV +I +G GF+ F +E+A+ +L
Sbjct: 335 DADVTEEDLMQPFSDFGEVVSVKIP------VGKGCGFVQFANRQSAEEAIGNL 382
>AT3G55460.1 | Symbols: SCL30, At-SCL30 | SC35-like splicing factor
30 | chr3:20561024-20563502 FORWARD LENGTH=262
Length = 262
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 135 IFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITF-DSEDAVDDLLSM 193
+ V IP + +E R+ F R+G V+D I RD+ + + RGF F+ F D+ DA + SM
Sbjct: 49 LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSM 108
Query: 194 GNKIDFAGTQVEI 206
N+ FAG ++ +
Sbjct: 109 -NRRSFAGREITV 120
>AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4673027-4675950 FORWARD LENGTH=427
Length = 427
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 77/160 (48%), Gaps = 17/160 (10%)
Query: 40 DGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYAD---P 96
D ++ +++G + + T + F G + S +++ K++ +GF+ Y D
Sbjct: 54 DPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS----YGFVHYFDRRSA 109
Query: 97 SVVDKVIEDTHIINGKQVEIKRTIPRGAVGSKDFKTK--KIFVGGIPSNVTEDEFRDFFT 154
++ + H+ G+ +++ A G ++ + IFVG + VT+ F+
Sbjct: 110 ALAILSLNGRHLF-GQPIKVNWAY---ATGQREDTSSHFNIFVGDLSPEVTDATLYQSFS 165
Query: 155 RYGEVKDNQIMRDHSTNRSRGFGFITF----DSEDAVDDL 190
+ D ++M D T RSRGFGF++F D++ A++++
Sbjct: 166 VFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 205
>AT2G16940.3 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=599
Length = 599
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 78/169 (46%), Gaps = 20/169 (11%)
Query: 53 ARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIEDT-HIING 111
+R + F+ F + D I+ DR + + RG G++ + D V I + + G
Sbjct: 232 SRAGKVCPFLCRF----HVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAIALSGQPLLG 287
Query: 112 KQVEIKRT-IPRGAVGSKDFK-------------TKKIFVGGIPSNVTEDEFRDFFTRYG 157
+ V +K + + V S ++++VG + N++ED+ R F +G
Sbjct: 288 QPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMSEDDLRKVFESFG 347
Query: 158 EVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
V+ Q+ RD T +GFGF+ F + + L++ +++ AG +++
Sbjct: 348 SVELVQVPRDE-TGLCKGFGFVQFARLEDARNALNLNGQLEIAGRAIKV 395
>AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:17351334-17352769 REVERSE LENGTH=352
Length = 352
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 9/77 (11%)
Query: 135 IFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSED----AVDDL 190
++VGGIP ++TE + F++YGE+ D ++RD T +S+GF F+ ++ + AVD+L
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 191 ---LSMGN--KIDFAGT 202
L +G K+D G
Sbjct: 98 NGALVLGRTIKVDHCGA 114
>AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17427182 FORWARD LENGTH=432
Length = 432
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 85/192 (44%), Gaps = 14/192 (7%)
Query: 28 HDQHHNSQPLTGDGASPGK---IFIGGLARETTIAQFIKHF--GKYGEITDSVIMKDRKT 82
H HH S+ A G+ I++G L A F G EI +++++
Sbjct: 81 HHLHHQSRGNKHQNAFNGENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNN 140
Query: 83 AQPRGFGFITYADPSVVDKVIED---THIINGKQVEIKRTIPRGAVGSKDFKTK----KI 135
G+GF+ + V DKV+ + T + N Q + + G K + I
Sbjct: 141 GLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQ-PFRLNWASFSTGEKRLENNGPDLSI 199
Query: 136 FVGGIPSNVTEDEFRDFFT-RYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMG 194
FVG + +V+++ + F+ +Y VK +++ D +T RS+G+GF+ F E+ ++
Sbjct: 200 FVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEM 259
Query: 195 NKIDFAGTQVEI 206
N + + + I
Sbjct: 260 NGVKCSSRAMRI 271
>AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein
47C' | chr1:17432682-17434805 FORWARD LENGTH=434
Length = 434
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 79/167 (47%), Gaps = 29/167 (17%)
Query: 47 IFIGGLARETTIAQFIKHFG-KYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
IF+G LA + + A + F KY + + ++ D T + +G+GF+ + D + K + +
Sbjct: 201 IFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 260
Query: 106 THII--NGKQVEIKRTIPRGAVGSK----------------DFKTKKIFVGGIPSNVTED 147
+ + + + + I PR G + D IFVGG+ S+VT++
Sbjct: 261 MNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDE 320
Query: 148 EFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITF----DSEDAVDDL 190
+ + F+ +GE+ +I +G GF+ F ++E+A++ L
Sbjct: 321 DLKQPFSEFGEIVSVKIP------VGKGCGFVQFVNRPNAEEALEKL 361
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 87/195 (44%), Gaps = 16/195 (8%)
Query: 22 YSHREDHDQHHNSQPLTGDGASPGKIFIGGLARETTIAQFIKHF--GKYGEITDSVIMKD 79
+ H+ ++H N+ G+ + I++G L A F + EI ++++
Sbjct: 85 FHHQSRGNKHQNA--FNGENKT---IWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRN 139
Query: 80 RKTAQPRGFGFITYADPSVVDKVIED---THIINGKQVEIKRTIPRGAVGSKDFKTK--- 133
+ G+GF+ + V DKV+++ + N Q + + G K +
Sbjct: 140 KHNGSSEGYGFVEFESHDVADKVLQEFNGAPMPNTDQ-PFRLNWASFSTGEKRLENNGPD 198
Query: 134 -KIFVGGIPSNVTEDEFRDFFT-RYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLL 191
IFVG + +V++ + F+ +Y VK +++ D +T RS+G+GF+ F E+ +
Sbjct: 199 LSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 258
Query: 192 SMGNKIDFAGTQVEI 206
+ N + + + I
Sbjct: 259 TEMNGVKCSSRAMRI 273
>AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21798382-21799109 FORWARD LENGTH=169
Length = 169
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITF-DSEDAV 187
KI+VGG+P ++ +FF R+GE+ ++ D T+RS+G+GF+TF D+E A
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESAT 68
>AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17426114 FORWARD LENGTH=310
Length = 310
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 85/192 (44%), Gaps = 14/192 (7%)
Query: 28 HDQHHNSQPLTGDGASPGK---IFIGGLARETTIAQFIKHF--GKYGEITDSVIMKDRKT 82
H HH S+ A G+ I++G L A F G EI +++++
Sbjct: 81 HHLHHQSRGNKHQNAFNGENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNN 140
Query: 83 AQPRGFGFITYADPSVVDKVIED---THIINGKQVEIKRTIPRGAVGSKDFKTK----KI 135
G+GF+ + V DKV+ + T + N Q + + G K + I
Sbjct: 141 GLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQ-PFRLNWASFSTGEKRLENNGPDLSI 199
Query: 136 FVGGIPSNVTEDEFRDFFT-RYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMG 194
FVG + +V+++ + F+ +Y VK +++ D +T RS+G+GF+ F E+ ++
Sbjct: 200 FVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEM 259
Query: 195 NKIDFAGTQVEI 206
N + + + I
Sbjct: 260 NGVKCSSRAMRI 271
>AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917301 FORWARD
LENGTH=306
Length = 306
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 35 QPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYA 94
QP T D ++IG L F GE+ + ++++++T Q G+GFI +A
Sbjct: 54 QPTTADEIR--TLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFA 111
Query: 95 DPSVVDKVIE---DTHIINGKQVEIKRTIPRGAVGSK--DFKTKKIFVGGIPSNVTEDEF 149
+ ++V++ + I + + + G K D IFVG + ++VT+
Sbjct: 112 SHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYIL 171
Query: 150 RDFF-TRYGEVKDNQIMRDHSTNRSRGFGFITFDSE 184
+ F Y VK +++ D T R++G+GF+ F E
Sbjct: 172 LETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDE 207
>AT3G54770.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:20273863-20275731 REVERSE LENGTH=218
Length = 218
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 64 HFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED-THIINGKQVEI 116
HF KYG+I ++VI+ D+ T + +G+GF+T+ D + ED T IING++
Sbjct: 4 HFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGRRANC 57
>AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2199653-2201150 REVERSE LENGTH=317
Length = 317
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 126 GSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSED 185
+ D + KIFVG + T D+ R +F ++G+V D ++ + RS+G+GFITF D
Sbjct: 5 NNHDTRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITF--RD 62
Query: 186 AVDDLLSMGN 195
V + ++ N
Sbjct: 63 YVSTVRALQN 72