Miyakogusa Predicted Gene

Lj2g3v0919480.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0919480.1 tr|B9DHJ7|B9DHJ7_ARATH AT5G16210 protein
(Fragment) OS=Arabidopsis thaliana GN=AT5G16210 PE=2
SV=1,35.71,0.0000000000003,LISH,LisH dimerisation motif; Lissencephaly
type-1-like homology motif,LisH dimerisation motif; SUBF,CUFF.35759.1
         (498 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G16210.1 | Symbols:  | HEAT repeat-containing protein | chr5:...   434   e-122

>AT5G16210.1 | Symbols:  | HEAT repeat-containing protein |
           chr5:5290999-5297779 REVERSE LENGTH=1180
          Length = 1180

 Score =  434 bits (1117), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 247/481 (51%), Positives = 330/481 (68%), Gaps = 12/481 (2%)

Query: 19  MDVERASLCNLVVNFLLEENYILTAFELLHELLDNGRNNQAIRLQQYFSDPSLFPPNQIS 78
           MD ER+SLCN  VNFL+EENY+LTAFELLHELLD+GR+ QAIRL+++FSDPS FPP+QIS
Sbjct: 1   MDAERSSLCNFFVNFLMEENYLLTAFELLHELLDDGRDAQAIRLKEFFSDPSRFPPDQIS 60

Query: 79  RFNSLPLADPQTLLQQKEAAEEKLAVTDYELRLAREDIVKLKSELQTKVECLNQLYAKSS 138
           R+NS+ +ADPQ+LL++KEA  EKLA+++YE RLA+EDI +LK+E Q K         +  
Sbjct: 61  RYNSIRVADPQSLLEEKEALAEKLAISEYEFRLAQEDIARLKTEGQKKSVPSIDKSEEMD 120

Query: 139 GDASVNNELQIQQRNGDISFTYLGPLRDSERRDLNCAVKEYLLIAGYRLTAMTFYEEVTD 198
            D    N  +IQ++  D SFT +GPL+++ER+DLNCAVKEYLL+AGYRLTAMTFYEEVTD
Sbjct: 121 SDEFGGNRPEIQRKKKDFSFTDIGPLKNNERQDLNCAVKEYLLLAGYRLTAMTFYEEVTD 180

Query: 199 QNLDIWQNTHALIPDALRHYYYQYLLSTSEAAEEKIAQVLENETLLKANQRLSQEKESLL 258
           QNLD+WQ++ A +PDALR+YYYQYL STSEAAEEKIA + ENE+L K  +RLS+EK+ LL
Sbjct: 181 QNLDVWQDSPAHVPDALRYYYYQYLSSTSEAAEEKIAMLQENESLKKEIERLSKEKDGLL 240

Query: 259 KGKDLSDGQIGALTKSLETLQGDLKHKEDLVLVLNKSLENQREELHASRVETSKLKMHIE 318
           K K+  + QIGA  KS E+LQ DL+ +E  V  L +S E+QR  L+  R E + LKMHIE
Sbjct: 241 KSKENFEEQIGAFNKSTESLQKDLRDREKQVQSLKQSSEHQRRNLNDCRAEITSLKMHIE 300

Query: 319 GSGSGKNLVVSDVDNFQPESIDKYKEEIKKLQME-IEGLKEKNKGPPENGIFVPENEIMQ 377
           GS +G+ + +++ D  + +S  + +E+I  L  E +    EK+ G         E   +Q
Sbjct: 301 GSRAGQYVSLNEGDPVKLQS-KEVEEQISTLSEEVVNPTVEKDGGLISKVSISAEKGHIQ 359

Query: 378 TEDKVIEIHEDQGAISHPVEVALDVVQDEDAHSPVVQTLNYYADKHKDSQHTLFDPANAN 437
           TED ++ + E +  I+   EVA +      A+       N   +  K+  + L  P+N N
Sbjct: 360 TEDDMV-VEEVKNIIADQREVAGEAGNISYAN-------NGTLENQKEVSNYLLSPSNGN 411

Query: 438 SAFESIENVSAHDGGKQEQDSRCAKSGNVDDEAISEKKGLGTIQILADALPKIVPYVLIN 497
            +   + ++   D G   +DS  +KS N + EA SE+ GLGTIQILADALP IVPYVLIN
Sbjct: 412 FSPRDLGSILKVDPGIG-RDSN-SKSDNANGEAASEEMGLGTIQILADALPNIVPYVLIN 469

Query: 498 H 498
           H
Sbjct: 470 H 470