Miyakogusa Predicted Gene
- Lj2g3v0918380.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v0918380.1 tr|B9N7N9|B9N7N9_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_584639 PE=4
SV=1,95.45,0,Translation initiation factor 2 beta, aIF2beta,
N-terminal domain,Translation initiation factor IF2/,CUFF.35752.1
(182 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G36730.1 | Symbols: | Translation initiation factor IF2/IF5 ... 307 3e-84
AT1G77840.1 | Symbols: | Translation initiation factor IF2/IF5 ... 300 4e-82
AT5G20920.2 | Symbols: EIF2 BETA | eukaryotic translation initia... 54 8e-08
AT5G20920.3 | Symbols: EIF2 BETA | eukaryotic translation initia... 54 8e-08
AT5G20920.1 | Symbols: EIF2 BETA, EMB1401 | eukaryotic translati... 54 8e-08
AT3G07920.1 | Symbols: | Translation initiation factor IF2/IF5 ... 49 3e-06
>AT1G36730.1 | Symbols: | Translation initiation factor IF2/IF5 |
chr1:13898706-13900025 REVERSE LENGTH=439
Length = 439
Score = 307 bits (786), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 147/166 (88%), Positives = 159/166 (95%)
Query: 1 MALQNIGAGNSDDAFYRYKMPRMITKIEGRGNGIKTNIVNMVDIAKALARPAAYTTKYFG 60
MALQNIGA N DDAFYRYKMPRM+TKIEGRGNGIKTN+VNMV+IAKAL RPAAYTTKYFG
Sbjct: 1 MALQNIGASNRDDAFYRYKMPRMMTKIEGRGNGIKTNVVNMVEIAKALGRPAAYTTKYFG 60
Query: 61 CELGAQSKFDEKNGTSHVNGAHETAKLAALLENFIKKYVQCYGCGNPETEVLITKSQMIQ 120
CELGAQSKFDEKNGTS VNGAH+T+KLA LLENFIKKYVQCYGCGNPETE+LITK+QM+Q
Sbjct: 61 CELGAQSKFDEKNGTSLVNGAHDTSKLAGLLENFIKKYVQCYGCGNPETEILITKTQMLQ 120
Query: 121 LKCAACGFVSDVDMRDKLTTFIVKNPPETKKGSKDKKAMRRAEKER 166
LKCAACGF+SDVDMRDKLT+FI+KNPPE KK SKDKK+MRRAEKER
Sbjct: 121 LKCAACGFLSDVDMRDKLTSFILKNPPEQKKSSKDKKSMRRAEKER 166
>AT1G77840.1 | Symbols: | Translation initiation factor IF2/IF5 |
chr1:29269087-29270400 FORWARD LENGTH=437
Length = 437
Score = 300 bits (768), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 136/166 (81%), Positives = 153/166 (92%)
Query: 1 MALQNIGAGNSDDAFYRYKMPRMITKIEGRGNGIKTNIVNMVDIAKALARPAAYTTKYFG 60
MALQNIGA N +DAFYRYKMP+M+TK EG+GNGIKTNI+N V+IAKALARP +YTTKYFG
Sbjct: 1 MALQNIGASNRNDAFYRYKMPKMVTKTEGKGNGIKTNIINNVEIAKALARPPSYTTKYFG 60
Query: 61 CELGAQSKFDEKNGTSHVNGAHETAKLAALLENFIKKYVQCYGCGNPETEVLITKSQMIQ 120
CELGAQSKFDEK GTS VNGAH T+KLA LLENFIKK+VQCYGCGNPETE++ITK+QM+
Sbjct: 61 CELGAQSKFDEKTGTSLVNGAHNTSKLAGLLENFIKKFVQCYGCGNPETEIIITKTQMVN 120
Query: 121 LKCAACGFVSDVDMRDKLTTFIVKNPPETKKGSKDKKAMRRAEKER 166
LKCAACGF+S+VDMRDKLT FI+KNPPE KK SKDKKAMR+AEKER
Sbjct: 121 LKCAACGFISEVDMRDKLTNFILKNPPEQKKVSKDKKAMRKAEKER 166
>AT5G20920.2 | Symbols: EIF2 BETA | eukaryotic translation
initiation factor 2 beta subunit | chr5:7094994-7096661
REVERSE LENGTH=267
Length = 267
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 35 KTNIVNMVDIAKALARPAAYTTKYFGCELGAQSKFDEKNGTSHVNGAHETAKLAALLENF 94
KT VN +D+ K + R + +Y ELG D + V G +L +
Sbjct: 156 KTVFVNFMDLCKTMHRQPDHVMQYLLAELGTSGSLDGQQRLV-VKGRFAPKNFEGILRRY 214
Query: 95 IKKYVQCYGCGNPETEVLITKSQMIQLKCAACG 127
I YV C GC +P+T +L ++++ L+C CG
Sbjct: 215 ITDYVICLGCKSPDT-ILSKENRLFFLRCEKCG 246
>AT5G20920.3 | Symbols: EIF2 BETA | eukaryotic translation
initiation factor 2 beta subunit | chr5:7094994-7096661
REVERSE LENGTH=268
Length = 268
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 35 KTNIVNMVDIAKALARPAAYTTKYFGCELGAQSKFDEKNGTSHVNGAHETAKLAALLENF 94
KT VN +D+ K + R + +Y ELG D + V G +L +
Sbjct: 157 KTVFVNFMDLCKTMHRQPDHVMQYLLAELGTSGSLDGQQRLV-VKGRFAPKNFEGILRRY 215
Query: 95 IKKYVQCYGCGNPETEVLITKSQMIQLKCAACG 127
I YV C GC +P+T +L ++++ L+C CG
Sbjct: 216 ITDYVICLGCKSPDT-ILSKENRLFFLRCEKCG 247
>AT5G20920.1 | Symbols: EIF2 BETA, EMB1401 | eukaryotic translation
initiation factor 2 beta subunit | chr5:7094994-7096661
REVERSE LENGTH=268
Length = 268
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 35 KTNIVNMVDIAKALARPAAYTTKYFGCELGAQSKFDEKNGTSHVNGAHETAKLAALLENF 94
KT VN +D+ K + R + +Y ELG D + V G +L +
Sbjct: 157 KTVFVNFMDLCKTMHRQPDHVMQYLLAELGTSGSLDGQQRLV-VKGRFAPKNFEGILRRY 215
Query: 95 IKKYVQCYGCGNPETEVLITKSQMIQLKCAACG 127
I YV C GC +P+T +L ++++ L+C CG
Sbjct: 216 ITDYVICLGCKSPDT-ILSKENRLFFLRCEKCG 247
>AT3G07920.1 | Symbols: | Translation initiation factor IF2/IF5 |
chr3:2524787-2526229 REVERSE LENGTH=164
Length = 164
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 35 KTNIVNMVDIAKALARPAAYTTKYFGCELGAQSKFDEKNGTSHVNGAHETAKLAALLENF 94
KT VN +D K + R + + ELG + K D++ V G +LL +
Sbjct: 59 KTVFVNFMDYCKTMHRNPDHVMAFLLAELGTRGKLDDQQRLV-VRGRFTQRDFESLLRGY 117
Query: 95 IKKYVQCYGCGNPETEVLITKSQMIQLKCAACG 127
I YV C C + E +L ++++ L+C CG
Sbjct: 118 ILDYVMCIPCKSTEA-ILSKENRLFFLRCGKCG 149