Miyakogusa Predicted Gene

Lj2g3v0914620.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0914620.1 tr|A9T8L9|A9T8L9_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_141946,36.89,8e-17,seg,NULL; FAMILY NOT
NAMED,NULL,CUFF.35704.1
         (480 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G07170.1 | Symbols:  | ARM repeat superfamily protein | chr2:...   246   3e-65
AT1G50890.1 | Symbols:  | ARM repeat superfamily protein | chr1:...    56   5e-08

>AT2G07170.1 | Symbols:  | ARM repeat superfamily protein |
           chr2:2975565-2978692 FORWARD LENGTH=820
          Length = 820

 Score =  246 bits (627), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 175/483 (36%), Positives = 265/483 (54%), Gaps = 32/483 (6%)

Query: 7   RIPLSARKGCQNYVGNPHNLKPDDWHVEIAVPR--IRSTAEFQNEESDCSSVSKPMETMS 64
           ++P+SAR+    Y  +P     DDWH+EIAVP     S  +  NEES+ S ++K      
Sbjct: 355 KVPVSARQPPTRYNDDPRKSNQDDWHIEIAVPESSFVSKVDLYNEESEGSCITKTF---- 410

Query: 65  ADVTSLQDVGYEYEPIDDKQECSSVSNLTTDNYDTKFLTTQDCCIN-NELQKPIARSQRF 123
           A+ T+  +V YEY P+ DK + S V+    +N D K +T        + +  P   S+ +
Sbjct: 411 AETTNTPEVTYEYIPMKDKAD-SYVTGGVNENDDIKSITVSSSSFRASGMVNPAITSKNY 469

Query: 124 G-EEISCNEQIYSKKMQHPRSSDSTVTVSNPQTTHECCAQMANEMICIQNQLSDMEIKQA 182
             EE    EQ +S +++   S DS VTVS+ Q  H+CCA++ANEM  ++ QLSD+E KQ+
Sbjct: 470 AAEETDLEEQPFSTQVKDRTSLDSFVTVSSSQINHDCCAKIANEMASVRKQLSDIENKQS 529

Query: 183 NTMHQLQMSITGIVDALSTIQSRMLSLEYAVDRLNQESLQGGRHSYSENSRLVRQSQN-V 241
             + QLQ+  TGI++  S +QS++ SLEYAV+ + Q +     HS   NS  V+ +Q   
Sbjct: 530 RLIDQLQVFSTGIMNNFSVLQSKVSSLEYAVEGIAQNA---ALHSDISNSNFVKHNQGST 586

Query: 242 ASPKFPICTPRPSAEISNKQSAMSVKNSESWEKTTFSRSQPRIHVGDSEDLWKSCNVNVA 301
            SP+   CT R S +I N+QS +S  +  S E  T  RS+    + +S+ + K+ +  + 
Sbjct: 587 ISPRLSSCTSRTSTDIRNRQSTLST-SKYSRENKTHVRSR----LNESQGMEKTRSNPLG 641

Query: 302 RK---FTEKDILNCSGKDTQ-----RTSSAQMRKNDGIFAARNSCSESNTNQWKCVKRLI 353
           +     T +DI N  G+  Q     RTSS      D I + R   +E  +   K V  + 
Sbjct: 642 KTGQLHTREDIWNNIGQGRQTLIQTRTSS------DSIQSIRQQYAEVMSGTRKPVTGVS 695

Query: 354 CEGDLNSAYMEAXXXXXXXXXXXXXXKTGPVIESLSVKTVNVLFSTLASYLVEANYFSTI 413
           CE  + S Y++               +TGPV+ES+S +T+N + S L SYL+E  + ++I
Sbjct: 696 CEDVVESEYLQVLSSGDELALVELLDRTGPVLESMSSQTINEILSILLSYLLERRFMNSI 755

Query: 414 MPWLQQVVDMSTIHGPNCISLSTDAKEQLLSAIQEAVNLNIFSPAERRCVAEIAMKLHHM 473
           +PWL QV D+ST +G N +  S   + Q+LSAIQEA  ++  + AERR V +IAMKL  +
Sbjct: 756 LPWLHQVADLSTTNGANYLIPSARKRAQVLSAIQEASGMDFSNLAERRAVTQIAMKLRKL 815

Query: 474 WGK 476
           WGK
Sbjct: 816 WGK 818


>AT1G50890.1 | Symbols:  | ARM repeat superfamily protein |
           chr1:18862295-18865752 REVERSE LENGTH=821
          Length = 821

 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 59/287 (20%), Positives = 120/287 (41%), Gaps = 40/287 (13%)

Query: 170 IQNQLSDMEIKQANTMHQLQMSITGIVDALSTIQSRMLSLEYAVDRLNQE-SLQGGRHSY 228
           +Q QL  +E +Q + M+ LQ  + G  D + ++++R+  LE  V+ +++E S+Q G    
Sbjct: 503 LQRQLLHLERQQTHIMNMLQDFMGGSHDGMISLENRVRGLERIVEEMSREMSIQSGARGK 562

Query: 229 S-----------ENSRLVRQSQNVASPKFPICTPRPSAEISNKQSAMSVKNSESWEKTTF 277
           +           ++      S+N  +    I    PS +  N + A        W+K++ 
Sbjct: 563 ATASWRSDVDGWDSPNYGPSSRNTQTSTRKIRGTGPSEQSGNSRRA--------WDKSSV 614

Query: 278 SRSQPRIHVGD---SEDLWKSCNVNVARKFTEKDILNCSGKDTQRTS----SAQMRKNDG 330
           +     I +G+   +  +W++       +       +C     +R S     A M ++D 
Sbjct: 615 A-----IRLGEGPSARSVWQASKDEATLEAIRVAGEDCGTSRNRRVSIPEAEAMMDEDDD 669

Query: 331 IFAARNSCSESNTNQWKCVKRLICE---GDLNSAYMEAXXXXXXXXXXXXXXKTGPVIES 387
                N   +     W C    +     GD +SA+ E               KTGPV++ 
Sbjct: 670 -----NRGGQQGDPIWTCWSNSVHALRVGDTDSAFAEVLSTGDDHLLVKLMDKTGPVLDQ 724

Query: 388 LSVKTVNVLFSTLASYLVEANYFSTIMPWLQQVVDMSTIHGPNCISL 434
           LS    N    ++A +L++   +   + W+QQ++++S  +G + + +
Sbjct: 725 LSSDMGNEAIHSIAQFLLDHTLYDICLSWIQQLLEVSVENGADFMGI 771