Miyakogusa Predicted Gene

Lj2g3v0914330.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0914330.1 Non Chatacterized Hit- tr|K4CYX1|K4CYX1_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,40,0.000000000000007,MBD,Methyl-CpG DNA binding; ZF_CW,Zinc
finger, CW-type; zf-CW,Zinc finger, CW-type; Methyl-CpG
bindi,NODE_55981_length_1550_cov_57.864517.path1.1
         (344 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G35330.3 | Symbols: MBD02 | methyl-CPG-binding domain protein...   253   1e-67
AT5G35330.2 | Symbols: MBD02, MBD2 | methyl-CPG-binding domain p...   253   1e-67
AT5G35330.1 | Symbols: MBD02, MBD2, ATMBD2 | methyl-CPG-binding ...   253   1e-67
AT5G35338.2 | Symbols: MBD12 | methyl-CPG-binding domain 12 | ch...   147   9e-36
AT3G63030.1 | Symbols: MBD4 | methyl-CPG-binding domain 4 | chr3...   117   1e-26
AT4G22745.1 | Symbols: MBD1 | methyl-CPG-binding domain 1 | chr4...   114   1e-25
AT4G00416.1 | Symbols: MBD3 | methyl-CPG-binding domain 3 | chr4...    71   1e-12

>AT5G35330.3 | Symbols: MBD02 | methyl-CPG-binding domain protein 02
           | chr5:13523725-13525270 REVERSE LENGTH=272
          Length = 272

 Score =  253 bits (647), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 115/179 (64%), Positives = 144/179 (80%), Gaps = 2/179 (1%)

Query: 122 PSVGAFTVQCASCFKWRLIPTKEKYEEIREHILEQPFVCQRALEWRPDVSCDDPEDISQD 181
           PS+GAFTVQCASCFKWRL+P+ +KYEEIRE +LE PF C  A EW+PD+SCD P DI QD
Sbjct: 54  PSIGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTAREWKPDISCDVPADIYQD 113

Query: 182 GNRIWAIDKPSIAQPPDGWQRLLRIRSEGSSKFADVYYVAPTGKRLRSMVDIQKFLTNHP 241
           G R+WAIDKP+I++PP GWQRLLRIR EG ++FADVYYVAP+GK+LRS V++QK+L ++ 
Sbjct: 114 GTRLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPSGKKLRSTVEVQKYLNDNS 173

Query: 242 EYLKDGVTLSRFSFTIPKPLQENYVRKRPATLKSSYDLSGPVQPEQARPLSIAWPGPED 300
           EY+ +GV LS+FSF IPKPLQ++YVRKRPA L  S D +     ++A PL  AW  P+D
Sbjct: 174 EYIGEGVKLSQFSFQIPKPLQDDYVRKRPARLLDSIDNTNTPVAKEANPL--AWISPDD 230


>AT5G35330.2 | Symbols: MBD02, MBD2 | methyl-CPG-binding domain
           protein 02 | chr5:13523725-13525270 REVERSE LENGTH=272
          Length = 272

 Score =  253 bits (647), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 115/179 (64%), Positives = 144/179 (80%), Gaps = 2/179 (1%)

Query: 122 PSVGAFTVQCASCFKWRLIPTKEKYEEIREHILEQPFVCQRALEWRPDVSCDDPEDISQD 181
           PS+GAFTVQCASCFKWRL+P+ +KYEEIRE +LE PF C  A EW+PD+SCD P DI QD
Sbjct: 54  PSIGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTAREWKPDISCDVPADIYQD 113

Query: 182 GNRIWAIDKPSIAQPPDGWQRLLRIRSEGSSKFADVYYVAPTGKRLRSMVDIQKFLTNHP 241
           G R+WAIDKP+I++PP GWQRLLRIR EG ++FADVYYVAP+GK+LRS V++QK+L ++ 
Sbjct: 114 GTRLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPSGKKLRSTVEVQKYLNDNS 173

Query: 242 EYLKDGVTLSRFSFTIPKPLQENYVRKRPATLKSSYDLSGPVQPEQARPLSIAWPGPED 300
           EY+ +GV LS+FSF IPKPLQ++YVRKRPA L  S D +     ++A PL  AW  P+D
Sbjct: 174 EYIGEGVKLSQFSFQIPKPLQDDYVRKRPARLLDSIDNTNTPVAKEANPL--AWISPDD 230


>AT5G35330.1 | Symbols: MBD02, MBD2, ATMBD2 | methyl-CPG-binding
           domain protein 02 | chr5:13523725-13525270 REVERSE
           LENGTH=272
          Length = 272

 Score =  253 bits (647), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 115/179 (64%), Positives = 144/179 (80%), Gaps = 2/179 (1%)

Query: 122 PSVGAFTVQCASCFKWRLIPTKEKYEEIREHILEQPFVCQRALEWRPDVSCDDPEDISQD 181
           PS+GAFTVQCASCFKWRL+P+ +KYEEIRE +LE PF C  A EW+PD+SCD P DI QD
Sbjct: 54  PSIGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTAREWKPDISCDVPADIYQD 113

Query: 182 GNRIWAIDKPSIAQPPDGWQRLLRIRSEGSSKFADVYYVAPTGKRLRSMVDIQKFLTNHP 241
           G R+WAIDKP+I++PP GWQRLLRIR EG ++FADVYYVAP+GK+LRS V++QK+L ++ 
Sbjct: 114 GTRLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPSGKKLRSTVEVQKYLNDNS 173

Query: 242 EYLKDGVTLSRFSFTIPKPLQENYVRKRPATLKSSYDLSGPVQPEQARPLSIAWPGPED 300
           EY+ +GV LS+FSF IPKPLQ++YVRKRPA L  S D +     ++A PL  AW  P+D
Sbjct: 174 EYIGEGVKLSQFSFQIPKPLQDDYVRKRPARLLDSIDNTNTPVAKEANPL--AWISPDD 230


>AT5G35338.2 | Symbols: MBD12 | methyl-CPG-binding domain 12 |
           chr5:13549343-13550124 REVERSE LENGTH=155
          Length = 155

 Score =  147 bits (372), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 75/146 (51%), Positives = 97/146 (66%), Gaps = 7/146 (4%)

Query: 129 VQCASCFKWRLIPTKEKYEEIREHILEQPFVCQRALEWRPDVSCDDPEDISQDGNRIWAI 188
           VQC  C KWRLIP+ + Y  I+E  L+ PFVC     W P++SC+ P+D +      W  
Sbjct: 2   VQCTDCKKWRLIPSMQHYNIIKETQLQTPFVCGTTSGWTPNMSCNVPQDGTTCDT--W-- 57

Query: 189 DKPSIAQPPDGWQRLLRIRSEGSSKFADVYYVAPTGKRLRSMVDIQKFLTNHPEYLKDGV 248
             PSI   P GW R + IRSE S+KFADVYY  P+G+RLRS  ++Q FL NHPEY+++GV
Sbjct: 58  --PSIPPIPTGWSRSVHIRSE-STKFADVYYFPPSGERLRSSAEVQSFLDNHPEYVREGV 114

Query: 249 TLSRFSFTIPKPLQENYVRKRPATLK 274
             S+FSF IPKPL +NYV+KR   +K
Sbjct: 115 NRSQFSFQIPKPLDDNYVKKRTRPVK 140


>AT3G63030.1 | Symbols: MBD4 | methyl-CPG-binding domain 4 |
           chr3:23295394-23296425 FORWARD LENGTH=186
          Length = 186

 Score =  117 bits (293), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/140 (40%), Positives = 87/140 (62%), Gaps = 8/140 (5%)

Query: 124 VGAFTVQCASCFKWRLIPTKEKYEEIREHILEQPFVCQRALEWRPDVSCDDPEDISQDGN 183
           +  +  QC +C KWR+I ++E+YE+IR  +LE PF CQ+    +  +SC++P DI  D +
Sbjct: 25  IDTYAAQCDNCHKWRVIDSQEEYEDIRSKMLEDPFNCQK----KQGMSCEEPADIDYDSS 80

Query: 184 RIWAIDKPSIAQPPDGWQRLLRIRSEGSSKFADVYYVAPTGKRLRSMVDIQKFLTNHPEY 243
           R W IDKP + + P G++R L +R + S    D YY  PTGK+LRS  +I  F+  +PE+
Sbjct: 81  RTWVIDKPGLPKTPKGFKRSLVLRKDYSK--MDTYYFTPTGKKLRSRNEIAAFVEANPEF 138

Query: 244 LKDGVTLSRFSFTIPKPLQE 263
                 L  F+FT+PK +++
Sbjct: 139 R--NAPLGDFNFTVPKVMED 156


>AT4G22745.1 | Symbols: MBD1 | methyl-CPG-binding domain 1 |
           chr4:11947421-11948514 REVERSE LENGTH=204
          Length = 204

 Score =  114 bits (285), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 85/142 (59%), Gaps = 8/142 (5%)

Query: 123 SVGAFTVQCASCFKWRLIPTKEKYEEIREHILEQPFVCQRALEWRPDVSCDDPEDISQDG 182
           S+  F VQC  C KWR I T+++YE+IR  + E PF C+     +  VSC+D  D++ D 
Sbjct: 51  SIDVFAVQCEKCMKWRKIDTQDEYEDIRSRVQEDPFFCKT----KEGVSCEDVGDLNYDS 106

Query: 183 NRIWAIDKPSIAQPPDGWQRLLRIRSEGSSKFADVYYVAPTGKRLRSMVDIQKFLTNHPE 242
           +R W IDKP + + P G++R L +R + S    D YY+ PTGK+L+S  +I  F+  + +
Sbjct: 107 SRTWVIDKPGLPRTPRGFKRSLILRKDYSK--MDAYYITPTGKKLKSRNEIAAFIDANQD 164

Query: 243 YLKDGVTLSRFSFTIPKPLQEN 264
           Y      L  F+FT+PK ++E 
Sbjct: 165 Y--KYALLGDFNFTVPKVMEET 184


>AT4G00416.1 | Symbols: MBD3 | methyl-CPG-binding domain 3 |
           chr4:179022-179513 FORWARD LENGTH=163
          Length = 163

 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 74/137 (54%), Gaps = 18/137 (13%)

Query: 124 VGAFTVQCASCFKWRLIPTKEKYEEIREHILEQPFVCQRALEWRPDVSCDDPEDISQDGN 183
           + ++  QC  C K R I ++E YEEIR   LE+ F C+R         C++P D+  + +
Sbjct: 9   IDSYAAQCWKCLKVRSIESQEDYEEIRSKTLEKFFECKR---------CEEPGDMVMNFD 59

Query: 184 RI---WAIDKPSIAQPPDGWQRLLRIRSEGSSKFADVYY--VAPTGKRLRSMVDIQKFLT 238
            +   W  D+ SI + P G +R+L +R+       DVYY  +AP  KR +S+ ++  F+ 
Sbjct: 60  SLTMRWFQDEHSIPKTPQGLKRVLVVRTNCVK--VDVYYESLAPRRKRFKSIKEVATFIE 117

Query: 239 NHPEYLKDGVTLSRFSF 255
           +  E+ KD +TL   SF
Sbjct: 118 DKEEF-KD-MTLEEVSF 132