Miyakogusa Predicted Gene

Lj2g3v0912030.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0912030.1 Non Chatacterized Hit- tr|B9RK95|B9RK95_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,53.85,5e-18,seg,NULL; PRA1,Prenylated rab acceptor PRA1; PRENYLATED
RAB ACCEPTOR 1-RELATED,NULL,CUFF.35660.1
         (91 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G55190.1 | Symbols: PRA1.F2, PRA7 | PRA1 (Prenylated rab acce...    60   3e-10
AT1G17700.1 | Symbols: PRA1.F1 | prenylated RAB acceptor 1.F1 | ...    51   2e-07
AT3G13720.1 | Symbols: PRA1.F3, PRA8 | PRA1 (Prenylated rab acce...    50   4e-07

>AT1G55190.1 | Symbols: PRA1.F2, PRA7 | PRA1 (Prenylated rab
          acceptor) family protein | chr1:20588450-20589019
          FORWARD LENGTH=189
          Length = 189

 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 40/91 (43%)

Query: 1  MTTYGTISEESEVLSDSNPFLSQVTKDRIEAGLGTTRPWKEMIQPSHFKLPPSFFGAIQR 60
          MT YG I   S      +       K RI++GL T RPWK M       LP  FF AI R
Sbjct: 1  MTNYGAIPTSSHPSPAIDLEYISRAKHRIKSGLATRRPWKSMFDFESMTLPHGFFDAISR 60

Query: 61 VNTNAKHFRANYXXXXXXXXXXXXXGHPISL 91
          + TN  +FRANY              HP SL
Sbjct: 61 IKTNLGYFRANYAIGVLFILFLSLLYHPTSL 91


>AT1G17700.1 | Symbols: PRA1.F1 | prenylated RAB acceptor 1.F1 |
          chr1:6089588-6090130 FORWARD LENGTH=180
          Length = 180

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%)

Query: 1  MTTYGTISEESEVLSDSNPFLSQVTKDRIEAGLGTTRPWKEMIQPSHFKLPPSFFGAIQR 60
          MTTYGT  + S  L+    ++++       +GL T RPWK+M+    F  P      I R
Sbjct: 1  MTTYGTNQKSSNDLAPKLEYITRGINQHKRSGLATRRPWKQMLDLGSFNFPRKLATVITR 60

Query: 61 VNTNAKHFRANY 72
          +  N  +F+ NY
Sbjct: 61 IRANTVYFQTNY 72


>AT3G13720.1 | Symbols: PRA1.F3, PRA8 | PRA1 (Prenylated rab
          acceptor) family protein | chr3:4495202-4495768 REVERSE
          LENGTH=188
          Length = 188

 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 40/93 (43%), Gaps = 4/93 (4%)

Query: 1  MTTYGTI--SEESEVLSDSNPFLSQVTKDRIEAGLGTTRPWKEMIQPSHFKLPPSFFGAI 58
          MT YG I  S  +  L D    LS+  K RI+AGL T R W+ M       LP     A 
Sbjct: 1  MTNYGAIPTSSHASPLVDVES-LSR-AKHRIKAGLATRRAWRVMFDFHSMGLPHGVSDAF 58

Query: 59 QRVNTNAKHFRANYXXXXXXXXXXXXXGHPISL 91
           R+ TN  +FR NY              HP SL
Sbjct: 59 TRIKTNLAYFRMNYAIVVLIVIFFSLIWHPTSL 91