Miyakogusa Predicted Gene
- Lj2g3v0911970.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v0911970.1 Non Chatacterized Hit- tr|C5WNN8|C5WNN8_SORBI
Putative uncharacterized protein Sb01g050590
OS=Sorghu,56,3e-19,Tetraspannin,Tetraspanin/Peripherin; SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,NULL; seg,NULL,gene.g40220.t1.1
(77 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G19580.1 | Symbols: TET2 | tetraspanin2 | chr2:8472393-847502... 101 9e-23
AT5G46700.1 | Symbols: TET1, TRN2 | Tetraspanin family protein |... 73 3e-14
AT5G60220.1 | Symbols: TET4 | tetraspanin4 | chr5:24248957-24250... 63 3e-11
AT3G45600.1 | Symbols: TET3 | tetraspanin3 | chr3:16733973-16735... 58 1e-09
AT4G23410.1 | Symbols: TET5 | tetraspanin5 | chr4:12224094-12225... 55 1e-08
AT1G18520.1 | Symbols: TET11 | tetraspanin11 | chr1:6375051-6376... 53 5e-08
AT2G23810.1 | Symbols: TET8 | tetraspanin8 | chr2:10135859-10137... 52 8e-08
AT4G30430.1 | Symbols: TET9 | tetraspanin9 | chr4:14879029-14880... 52 1e-07
AT3G12090.1 | Symbols: TET6 | tetraspanin6 | chr3:3852326-385371... 51 1e-07
AT5G23030.1 | Symbols: TET12 | tetraspanin12 | chr5:7726819-7727... 46 4e-06
AT4G28050.1 | Symbols: TET7 | tetraspanin7 | chr4:13942566-13943... 45 8e-06
>AT2G19580.1 | Symbols: TET2 | tetraspanin2 | chr2:8472393-8475021
REVERSE LENGTH=270
Length = 270
Score = 101 bits (252), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 47/76 (61%), Positives = 55/76 (72%)
Query: 2 ADPDCYLWNNDQNQLCYNCNACKAGLLGKLRKEWRKXXXXXXXXXXXXXXXXXXXCSAYK 61
AD DCYLW+NDQ+QLCYNCN+CKAGLLG LRKEWRK CSA++
Sbjct: 195 ADADCYLWSNDQSQLCYNCNSCKAGLLGNLRKEWRKANLILIITVVVLIWVYVIACSAFR 254
Query: 62 NAKTEDLFRRYKRGWV 77
NA+TEDLFR+YK+GWV
Sbjct: 255 NAQTEDLFRKYKQGWV 270
>AT5G46700.1 | Symbols: TET1, TRN2 | Tetraspanin family protein |
chr5:18951035-18952439 FORWARD LENGTH=269
Length = 269
Score = 73.2 bits (178), Expect = 3e-14, Method: Composition-based stats.
Identities = 33/75 (44%), Positives = 46/75 (61%)
Query: 2 ADPDCYLWNNDQNQLCYNCNACKAGLLGKLRKEWRKXXXXXXXXXXXXXXXXXXXCSAYK 61
AD DC W+NDQN LCY C++CKAGLL ++ +W K C A++
Sbjct: 194 ADMDCLNWSNDQNTLCYTCDSCKAGLLANIKVDWLKADIFLLLALIGLIIVYIIGCCAFR 253
Query: 62 NAKTEDLFRRYKRGW 76
NA+TED+FR+YK+G+
Sbjct: 254 NAETEDIFRKYKQGY 268
>AT5G60220.1 | Symbols: TET4 | tetraspanin4 | chr5:24248957-24250065
FORWARD LENGTH=327
Length = 327
Score = 63.2 bits (152), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 36/62 (58%)
Query: 3 DPDCYLWNNDQNQLCYNCNACKAGLLGKLRKEWRKXXXXXXXXXXXXXXXXXXXCSAYKN 62
+PDC LWNNDQ LCY C++CKAG+LG L+K WRK C+AY+N
Sbjct: 201 NPDCMLWNNDQRLLCYQCSSCKAGVLGSLKKSWRKVSVINIVVVIILVIFYVIACAAYQN 260
Query: 63 AK 64
K
Sbjct: 261 VK 262
>AT3G45600.1 | Symbols: TET3 | tetraspanin3 | chr3:16733973-16735854
REVERSE LENGTH=285
Length = 285
Score = 58.2 bits (139), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 5 DCYLWNNDQNQLCYNCNACKAGLLGKLRKEWRK 37
DC +W+NDQ+ LCY C++CKAG+LG L+K WRK
Sbjct: 203 DCMVWSNDQSMLCYQCSSCKAGVLGSLKKSWRK 235
>AT4G23410.1 | Symbols: TET5 | tetraspanin5 | chr4:12224094-12225206
FORWARD LENGTH=281
Length = 281
Score = 54.7 bits (130), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 33/62 (53%)
Query: 3 DPDCYLWNNDQNQLCYNCNACKAGLLGKLRKEWRKXXXXXXXXXXXXXXXXXXXCSAYKN 62
DPDCY WNN LCY+C+ C+AG+L +R++W K C A+KN
Sbjct: 185 DPDCYRWNNAATVLCYDCDTCRAGVLETVRRDWHKLSLVNVIVVIFLIAVYCVGCCAFKN 244
Query: 63 AK 64
AK
Sbjct: 245 AK 246
>AT1G18520.1 | Symbols: TET11 | tetraspanin11 | chr1:6375051-6376178
FORWARD LENGTH=271
Length = 271
Score = 52.8 bits (125), Expect = 5e-08, Method: Composition-based stats.
Identities = 19/32 (59%), Positives = 26/32 (81%)
Query: 5 DCYLWNNDQNQLCYNCNACKAGLLGKLRKEWR 36
DC W+N Q +LC+NCNACKAG+L +R++WR
Sbjct: 204 DCGTWSNVQTELCFNCNACKAGVLANIREKWR 235
>AT2G23810.1 | Symbols: TET8 | tetraspanin8 | chr2:10135859-10137352
REVERSE LENGTH=273
Length = 273
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 2 ADPDCYLWNNDQNQLCYNCNACKAGLLGKLRKEWRKXXXXXXXXXXXXXXXXXXXCSAYK 61
+PDC W+N + +LC++C +CKAGLL ++ W+K C A++
Sbjct: 198 TNPDCQTWDNAKEKLCFDCQSCKAGLLDNVKSAWKKVAIVNIVFLVFLIIVYSVGCCAFR 257
Query: 62 NAKTEDLFRR 71
N K +D + R
Sbjct: 258 NNKRDDSYSR 267
>AT4G30430.1 | Symbols: TET9 | tetraspanin9 | chr4:14879029-14880272
REVERSE LENGTH=272
Length = 272
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 3 DPDCYLWNNDQNQLCYNCNACKAGLLGKLRKEWRKXXXXXXXXXXXXXXXXXXXCSAYKN 62
+ DC LW+N++++LCYNC ACKAG L L+ W++ C A++N
Sbjct: 198 NSDCQLWDNEKHKLCYNCKACKAGFLDNLKAAWKRVAIVNIIFLVLLVVVYAMGCCAFRN 257
Query: 63 AKTEDLFRRYKRG 75
K ED RY R
Sbjct: 258 NK-ED---RYGRS 266
>AT3G12090.1 | Symbols: TET6 | tetraspanin6 | chr3:3852326-3853714
REVERSE LENGTH=282
Length = 282
Score = 51.2 bits (121), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 30/60 (50%)
Query: 5 DCYLWNNDQNQLCYNCNACKAGLLGKLRKEWRKXXXXXXXXXXXXXXXXXXXCSAYKNAK 64
DC+ WNN LCY C+ACKAG+L ++R +WRK C A+ N +
Sbjct: 186 DCFRWNNGVEMLCYECDACKAGVLEEIRLDWRKLSVVNILVLVLLIAVYAAGCCAFHNTR 245
>AT5G23030.1 | Symbols: TET12 | tetraspanin12 | chr5:7726819-7727709
FORWARD LENGTH=264
Length = 264
Score = 46.2 bits (108), Expect = 4e-06, Method: Composition-based stats.
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 5 DCYLWNNDQNQLCYNCNACKAGLLGKLRKEWR 36
DC W+N Q QLCY C +CK G+L +RK WR
Sbjct: 197 DCKAWSNTQRQLCYACESCKIGVLKGIRKRWR 228
>AT4G28050.1 | Symbols: TET7 | tetraspanin7 | chr4:13942566-13943621
REVERSE LENGTH=263
Length = 263
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 3 DPDCYLWNNDQNQLCYNCNACKAGLLGKLRKEWRKXXXXXXXXXXXXXXXXXXXCSAYKN 62
+ DC +W+N LCY+C ACKAGLL ++ W+K C A++N
Sbjct: 198 NEDCNVWDNKPGTLCYDCEACKAGLLDNIKNSWKKVAKVNIVFLIFLIIVYSVGCCAFRN 257