Miyakogusa Predicted Gene

Lj2g3v0911670.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0911670.1 tr|A9T9S5|A9T9S5_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_168816,44.35,5e-18,GIY-YIG type nucleases (URI
domain),UvrABC system subunit C, N-terminal,CUFF.35645.1
         (474 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G56780.1 | Symbols: ATET2, ET2 | effector of transcription2 |...   292   4e-79
AT5G56770.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...   129   4e-30
AT4G26170.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   107   2e-23

>AT5G56780.1 | Symbols: ATET2, ET2 | effector of transcription2 |
           chr5:22964384-22966241 REVERSE LENGTH=483
          Length = 483

 Score =  292 bits (747), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 195/504 (38%), Positives = 266/504 (52%), Gaps = 73/504 (14%)

Query: 4   AAVNNRLKREQCDRTKHDSNFSHWKILIGPSDWEDFSKGKEGSARYRIHNLHKNSGSGVY 63
           A V    KRE   RTKHD+ FS W++LIG +DWEDF  GK+G  RYR+ NL + S  G+Y
Sbjct: 10  AVVPTVFKREDYKRTKHDTVFSKWQVLIGSNDWEDFKNGKDGVGRYRVQNLPRKSCPGLY 69

Query: 64  ELGIAVSRSGLGREIYKLVAADPQRVVVVYLGEADNVRARLQCYGRSGAHLGNSGSDD-- 121
           ELG+AV    +G+E  + +  +P  V+  YLG+A++VR+RLQ YGRSGAHL N  + +  
Sbjct: 70  ELGVAV----IGQEQCRKL--EPDIVLASYLGQAESVRSRLQRYGRSGAHLRNVNNLNDC 123

Query: 122 ---ASPQKGRP--LFQEIFSQGFPIVYRWAPMQNKEDALRTEAQLLDTFDYAWNTSNNGT 176
               SP K     LF++IFS+G  I+YRWAPM +K +A  TE  LL TFDYAWN  +NG 
Sbjct: 124 ETIESPVKAVTGGLFEDIFSKGGSILYRWAPMGSKREAEATEGMLLSTFDYAWNKGSNGE 183

Query: 177 RRPDDILRMLNKIASSTRTFSDVAKVLLPFTQRQVGIQIESSKLPLANDK--SDDEADSG 234
           RR  D+L+ L      ++  S ++++L PF + QVGI+I+  K  L  ++  + D  +  
Sbjct: 184 RRQLDLLKKLGDREFMSKRKSGISRMLFPFLRNQVGIRIKGEKHVLKEERKLTCDVDEEK 243

Query: 235 SNNFLSRVFKFNRSRPRIVQDITSGVIQENAKI-CGVTLGDGSICRKPPAEKRLRCPEHK 293
           SNNFL+ + K  RSRP+ V D    V    + I CGV L DG  C + P + R RC EHK
Sbjct: 244 SNNFLTSILKLTRSRPQPVSDRFDEVDGSCSDIVCGVLLEDGGCCIRSPVKGRKRCIEHK 303

Query: 294 GMRTNVSTAKAIKAPESKSVSYRYQNASHDIKDPPQTLVERPVDEIITQTNICGIVLDNG 353
           G R    + +    P+S+  + +     H+ KD                  +CG++L + 
Sbjct: 304 GQRVCRVSPEKQTPPKSEIFTGQDH---HNHKD---------------SDVVCGVILPDM 345

Query: 354 FPCRREPVKGRKRCQEHKGMRRN--------VSTAKVIKAPK------SEDIV------- 392
            PC + PV GRKRC++HKGMR N            K +K  K      +E I        
Sbjct: 346 EPCNKRPVPGRKRCEDHKGMRINAFLFLLNQTDREKTVKDEKPDPESHTESIEEEALTRF 405

Query: 393 --------LPYEFPQTEGNGYRYQNVSHDVKDPPQALVGSPV---GEIINNTNICGIILD 441
                   LP      +G+   +Q+      D       SPV    E   N   CG+ L 
Sbjct: 406 CEATTKNGLPCTRSSPKGSKRCWQHKEKTSSDT------SPVYFQPEAAKNV-ACGVKLG 458

Query: 442 DGSTCRRQPVKGRKRCLEHKGRRI 465
           +G  C R PVKGRKRC EHKG RI
Sbjct: 459 NGLICERSPVKGRKRCEEHKGMRI 482



 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 74/149 (49%), Gaps = 34/149 (22%)

Query: 328 PQTLVERPVDEIITQTN--ICGIVLDNGFPCRREPVKGRKRCQEHKGMRRNVSTAKVIKA 385
           PQ + +R  DE+    +  +CG++L++G  C R PVKGRKRC EHKG R    + +    
Sbjct: 259 PQPVSDR-FDEVDGSCSDIVCGVLLEDGGCCIRSPVKGRKRCIEHKGQRVCRVSPEKQTP 317

Query: 386 PKSEDIVLPYEFPQTEGNGYRYQNVSHDVKDPPQALVGSPVGEIINNTNICGIILDDGST 445
           PKSE            G  +      H+ KD               +  +CG+IL D   
Sbjct: 318 PKSEIFT---------GQDH------HNHKD---------------SDVVCGVILPDMEP 347

Query: 446 CRRQPVKGRKRCLEHKGRRIRAS-FHVNQ 473
           C ++PV GRKRC +HKG RI A  F +NQ
Sbjct: 348 CNKRPVPGRKRCEDHKGMRINAFLFLLNQ 376


>AT5G56770.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: effector of transcription2 (TAIR:AT5G56780.1); Has
           41 Blast hits to 41 proteins in 14 species: Archae - 0;
           Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr5:22962994-22963989 REVERSE LENGTH=254
          Length = 254

 Score =  129 bits (324), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/219 (37%), Positives = 120/219 (54%), Gaps = 29/219 (13%)

Query: 2   VAAAVNNRLKREQCDRTKHDSNFSHWKILIGPSDWEDFSKGKEGSARYRIHNLHKNSGSG 61
            ++AV    KRE    T HD  FS W+ LI  +DW+DF+  KE   RYR  +L     +G
Sbjct: 47  FSSAVPTMFKREDYKLTIHDIAFSKWRNLIRHNDWKDFNNRKERVRRYRHEDLPPQRCTG 106

Query: 62  VYELGIAVSRSGLGREIYKLVAADP-QRVVVVYLGEADNVRARLQCYGRSGAHLGNSGSD 120
           +YELG+ V     G+        DP   V+ VY+G+  +V++RLQ YGR G HL +    
Sbjct: 107 LYELGVGVIGQDQGQNF------DPDNNVLGVYVGQCVDVKSRLQDYGRRGGHLPSG--- 157

Query: 121 DASPQKGRPLFQEIFSQGFPIVYRWAPMQNKEDALRTEAQLLDTFDYAWNTSNNGTRRPD 180
                    L+++IFS+G+ + YRWAP     +A  TE  LL TFDYAWNT +NG RR  
Sbjct: 158 ---------LYEDIFSEGYSVFYRWAP-----EAAATEGMLLSTFDYAWNTCSNGERRHL 203

Query: 181 DILRMLNKIASSTRTFSDVAKVLLPFTQRQ-VGIQIESS 218
           ++ ++ +    S R     ++VL+P  + Q V I++E S
Sbjct: 204 ELQKLGDPEFMSKRK----SQVLVPSIRDQVVTIKVEKS 238


>AT4G26170.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED
           DURING: F mature embryo stage, petal differentiation and
           expansion stage, E expanded cotyledon stage, D bilateral
           stage; BEST Arabidopsis thaliana protein match is:
           effector of transcription2 (TAIR:AT5G56780.1); Has 75
           Blast hits to 42 proteins in 17 species: Archae - 0;
           Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 70;
           Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
           | chr4:13256930-13259382 FORWARD LENGTH=506
          Length = 506

 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 132/303 (43%), Gaps = 68/303 (22%)

Query: 199 VAKVLLPFTQRQVGIQIESSKLPLANDK--SDDEADSGSNNFLSRVFKFNRSRPRIVQDI 256
           +++ +LP TQ +   Q E  K     ++  S D A+  SN+ L  + + +RSRP+ V + 
Sbjct: 234 LSQTILPTTQNKSDNQTEEKKSDSEEEREVSSDAAEKESNS-LPSILRLSRSRPQPVSEK 292

Query: 257 TSGVIQEN--AKICGVTLGDGSICRKPPAEKRLRCPEHKGMRTNVSTAKAIKAPESKSVS 314
              ++ E+  A  CGV L DG+ C   P + R RC EHKG R                  
Sbjct: 293 HDDIVDESDSASACGVLLEDGTTCTTTPVKGRKRCTEHKGKR------------------ 334

Query: 315 YRYQNASHDIKDPPQTLVERPVDEIITQTNICGIVLDNGFPCRREPVKGRKRCQEHKGMR 374
                 S  I  P +    R  +E     NICG++L +   CR +PV  RKRC++HKGMR
Sbjct: 335 --LSRVSPGIHIPCEVPTVRECEET---ENICGVILPDMIRCRSKPVSRRKRCEDHKGMR 389

Query: 375 RNVSTAKVIKAPKSEDIVLPYEFPQT------EGNG------------------------ 404
            N     +    + + +      P+T      EG+G                        
Sbjct: 390 VNAFFFLLNPTERDKAVNEDKSKPETSTGMNQEGSGLLCEATTKNGLPCTRSAPEGSKRC 449

Query: 405 --YRYQNVSHDVKDPPQALVGSPVGEIINNTNICGIILDDGSTCRRQPVKGRKRCLEHKG 462
             ++ + ++H   +  Q+   S V        ICG  L +GS C + PVKGRKRC EHKG
Sbjct: 450 WQHKDKTLNHGSSENVQSATASQV--------ICGFKLYNGSVCEKSPVKGRKRCEEHKG 501

Query: 463 RRI 465
            RI
Sbjct: 502 MRI 504



 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 71/147 (48%), Gaps = 39/147 (26%)

Query: 328 PQTLVERPVDEIITQTN---ICGIVLDNGFPCRREPVKGRKRCQEHKGMRRNVSTAKVIK 384
           PQ + E+  D+I+ +++    CG++L++G  C   PVKGRKRC EHKG R     ++V  
Sbjct: 286 PQPVSEKH-DDIVDESDSASACGVLLEDGTTCTTTPVKGRKRCTEHKGKR----LSRV-- 338

Query: 385 APKSEDIVLPYEFPQTEGNGYRYQNVSHDVKDPPQALVGSPVGEIINNTNICGIILDDGS 444
              S  I +P E P                           V E     NICG+IL D  
Sbjct: 339 ---SPGIHIPCEVPT--------------------------VRECEETENICGVILPDMI 369

Query: 445 TCRRQPVKGRKRCLEHKGRRIRASFHV 471
            CR +PV  RKRC +HKG R+ A F +
Sbjct: 370 RCRSKPVSRRKRCEDHKGMRVNAFFFL 396