Miyakogusa Predicted Gene

Lj2g3v0911620.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0911620.1 Non Chatacterized Hit- tr|I7D132|I7D132_BRANA
Uncharacterized protein OS=Brassica napus PE=4
SV=1,26.43,5e-18,seg,NULL,CUFF.35633.1
         (514 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G11780.1 | Symbols:  | unknown protein; Has 37 Blast hits to ...   124   1e-28

>AT5G11780.1 | Symbols:  | unknown protein; Has 37 Blast hits to 37
           proteins in 12 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 3; Plants - 34; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr5:3793928-3795983 FORWARD LENGTH=504
          Length = 504

 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 140/521 (26%), Positives = 216/521 (41%), Gaps = 70/521 (13%)

Query: 18  LKQSMEALLAEVPKESPDFSLFIDAFYELIQAKVDPP-FEVIWVYAAIKFRGHESEKGDV 76
           L  S++ LL +      +FS F   F  ++    +PP  E++W Y+AI+F   +    D 
Sbjct: 21  LNDSIKQLLLQYRGGRTNFSDFDSIFTRILNDLPEPPPLELVWFYSAIRFYSSKLAFRD- 79

Query: 77  LDRVLAAKGLFQLIXXXXXXXXXXXXXXLLAPVVFVAHGVLVEILGRELSLKRERKAMRE 136
            D V      FQLI              LL+PVV+         L R L + R R A+  
Sbjct: 80  -DSVRLTSCFFQLIVSFSDSFSGVKKVSLLSPVVYQ--------LSR-LVISRRRDAL-- 127

Query: 137 VKSLVDMVLGYISVCCSKISEEEVDSDGLNLS-LPFTELANVWV--------DINDGFES 187
             SL++ ++ YIS+ C      E D D L +S   F +L+ VWV         + D  E 
Sbjct: 128 --SLLEGIVSYISMYCVDEPGNE-DDDVLMVSGFSFADLSRVWVVDEVEDNCRVEDCLEV 184

Query: 188 LLPLVSSDVCGWLCAREFHVGYLAGAIIMEVFFMKLCLALNLATPRDELELNLKTWAVGS 247
            +P  S  +   + +    VGYLAG +  +VF + LC   +L   R EL+ +L+   +  
Sbjct: 185 FMPFASEILRKEIDSESCGVGYLAGIVASQVFLLSLCSRFDLDLGRSELDKDLQESVLQM 244

Query: 248 ISSFQNKYFXXXXXXXXXXXXXXXISILK--PENEILLRKVLFDAILL-VEYPFLY-SNA 303
           IS F + +F                S++   PE+E  L +++ +A++  VE  FL   N 
Sbjct: 245 ISGFHSCFFFDVILKMLLEPYLHLTSLMGVVPEDEAFLTEIITEAVIKSVEKLFLNPGNG 304

Query: 304 KFDGSLTLTRL------IATHEAVKYFRELDQNRAVSYSSAFSASRIPLQIIKWVTSQNC 357
               SL L  +      +         R  DQ +   Y++ FS S IP  +I WV SQ  
Sbjct: 305 TSQRSLHLKNIAINWLFLFDKTMASLRRNKDQEKISMYTNMFSNSLIPYHLINWVISQGE 364

Query: 358 LEEKAGRANGSSPGALINWLLSLENRGITVFEDAALTSHAKLCLDNFQDKQQPSTLEGNI 417
           +   A      +P + I WL+SLE +G  VF       H+K    +   + +P    G  
Sbjct: 365 VIRDADTLRNLTPASFIEWLVSLEEQGPRVFN----CDHSKNYAKSVIHRSRPDLSIG-- 418

Query: 418 TDDVLFYVDNSGEAGNTGAEEKQNELISDAFVAAAH---TMKLTDNGTRKRK----GKSI 470
                           T  ++++ E   D  +A      ++ +    TRKRK     K  
Sbjct: 419 ----------------TTLQKQEEEFDQDTDMADEQNVSSISILSRNTRKRKEERHNKEG 462

Query: 471 ERKVKFVKH---DLHQNT--DPVKAGSSAPNDSSSGESEVE 506
           E KVK  KH   +L +N+   P     S  N S    S++E
Sbjct: 463 ETKVKLFKHRHSNLQENSKFQPFVFSGSLVNGSEVEVSDME 503