Miyakogusa Predicted Gene
- Lj2g3v0878960.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v0878960.1 tr|I1JMN9|I1JMN9_SOYBN Lysyl-tRNA synthetase
OS=Glycine max GN=Gma.301 PE=3 SV=1,88.31,0,tRNA-synt_2,Aminoacyl-tRNA
synthetase, class II (D/K/N); tRNA_anti,Nucleic acid binding, OB-fold,
tR,CUFF.35588.1
(590 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G13490.1 | Symbols: OVA5, ATKRS-2 | Lysyl-tRNA synthetase, cl... 869 0.0
AT3G11710.1 | Symbols: ATKRS-1 | lysyl-tRNA synthetase 1 | chr3:... 352 3e-97
AT4G26870.1 | Symbols: | Class II aminoacyl-tRNA and biotin syn... 89 9e-18
AT4G33760.1 | Symbols: | tRNA synthetase class II (D, K and N) ... 87 4e-17
AT4G31180.2 | Symbols: | Class II aminoacyl-tRNA and biotin syn... 60 4e-09
AT4G31180.1 | Symbols: | Class II aminoacyl-tRNA and biotin syn... 60 4e-09
AT3G30805.1 | Symbols: | Class II aminoacyl-tRNA and biotin syn... 53 5e-07
>AT3G13490.1 | Symbols: OVA5, ATKRS-2 | Lysyl-tRNA synthetase, class
II | chr3:4395984-4399302 REVERSE LENGTH=602
Length = 602
Score = 869 bits (2245), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/522 (79%), Positives = 469/522 (89%), Gaps = 2/522 (0%)
Query: 70 DREAIRAIRLKKVEELRSKGLNPYAYGWDKTHSADQLQDIYKDLGNGEEANSENDHVSVA 129
DREAIR+IRLKKVEELR +GL PYAY W+K+HSA+QLQ+IYK L NGEE+++E D VS+A
Sbjct: 80 DREAIRSIRLKKVEELRGQGLEPYAYKWEKSHSANQLQEIYKHLANGEESDNEIDCVSIA 139
Query: 130 GRIVARRAFGKLAFLTIRDDSGTIQLYCDKKRLIDDQFEQLKAHVDIGDILGAKGTIKRT 189
GR+VARRAFGKLAFLT+RDDSGTIQLYC+K+RL DDQFEQLK +DIGDILGA G++KRT
Sbjct: 140 GRVVARRAFGKLAFLTLRDDSGTIQLYCEKERLSDDQFEQLKQFIDIGDILGASGSMKRT 199
Query: 190 EKGELSVSVLSFAILTKSLLPLPDKYHGLTDTDIRYRQRYVDMIANPEVADVFRKRAKVV 249
EKGELS+ V SF+ILTKSLLPLPDKYHGLTD D RYRQRYVDMIANPEVADVFR+RAK+V
Sbjct: 200 EKGELSICVNSFSILTKSLLPLPDKYHGLTDIDKRYRQRYVDMIANPEVADVFRRRAKIV 259
Query: 250 SVIRRTMDSLGFVEVETPVLQGAAGGAEARPFITYHNSLGRDLYLRIATELHLKRMLVGG 309
S IR+T++S G++EVETPVLQGAAGGAEARPF+T+HNSLGRDLYLRIATELHLKRMLVGG
Sbjct: 260 SEIRKTVESFGYLEVETPVLQGAAGGAEARPFVTFHNSLGRDLYLRIATELHLKRMLVGG 319
Query: 310 FEKVYEIGRIFRNEGISTRHNPEFTTIEMYEAYSDYQSMMNMAEEIVAQCALAVHGKLTI 369
FEKVYEIGRIFRNEGISTRHNPEFTTIEMYEAYSDY SMM+MAE IV QC++AV+GKLTI
Sbjct: 320 FEKVYEIGRIFRNEGISTRHNPEFTTIEMYEAYSDYHSMMDMAELIVTQCSMAVNGKLTI 379
Query: 370 DYQGVEICLERPWRRETMHNLVKEIAGVDFNELGNDLKVAKQVTLDTLQKNLDNKDKASI 429
DYQG EICLERPWRRETMHNLVKEI G++F+ELG DL AK L LQ L+ KDK+ I
Sbjct: 380 DYQGTEICLERPWRRETMHNLVKEITGINFSELGEDLGNAKDTVLLALQDVLEPKDKSGI 439
Query: 430 EACKSVGHLLNEVFEIFVEPKLIQPTFVLDYPIEISPLAKPHRRSTGLTERFELFICGRE 489
AC S+GHLLNE+FE+ VEPKL+QPTFVLDYPIEISPLAKPHR + GLTERFELFICGRE
Sbjct: 440 RACSSLGHLLNEIFEVVVEPKLVQPTFVLDYPIEISPLAKPHRGNAGLTERFELFICGRE 499
Query: 490 LGNAFSELTDPIDQRGRLEDQIRQHEKKKA-AISTNGDPKEGIENEDD-SYEVTLDDDFL 547
+ NAFSELTDP+DQR RLE+Q+RQH K+A A+ + +P +++DD SYEVTLD+DFL
Sbjct: 500 MANAFSELTDPVDQRTRLEEQVRQHNAKRAEAVRESPEPNAKKDDDDDESYEVTLDEDFL 559
Query: 548 TALEYGMPPASGMGLGIDRLVMLLTNSPSIRDVIAFPVLKVQ 589
TALEYGMPPASGMGLGIDRLVMLLTNS SIRDVIAFPVLK+Q
Sbjct: 560 TALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFPVLKLQ 601
>AT3G11710.1 | Symbols: ATKRS-1 | lysyl-tRNA synthetase 1 |
chr3:3702359-3705613 REVERSE LENGTH=626
Length = 626
Score = 352 bits (904), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 210/551 (38%), Positives = 305/551 (55%), Gaps = 77/551 (13%)
Query: 78 RLKKVEELRSKGLNPYAYGWDKTHSADQLQDIYKDLGNGEEANSENDHVSVAGRIVARRA 137
RLK + ++KG NPY + + + S + + Y L NG+ EN S+AGRI+++R+
Sbjct: 94 RLKYLAAEKAKGENPYPHKFAVSMSIPKYIETYGSLNNGDHV--ENAEESLAGRIMSKRS 151
Query: 138 FG-KLAFLTIRDDSGTIQLYCDKKRLIDDQFEQLKAHVDI--GDILGAKGTIKRTEKGEL 194
KL F + D +Q+ D + D+ E LK H + GDI+G G +T++GEL
Sbjct: 152 SSSKLFFYDLHGDDFKVQVMADASKSGLDEAEFLKLHSNAKRGDIVGVIGFPGKTKRGEL 211
Query: 195 SVSVLSFAILTKSLLPLPDKY---------------------HGLTDTDIRYRQRYVDMI 233
S+ SF +L+ L +P K + L D + RYRQR++DMI
Sbjct: 212 SIFPRSFILLSHCLHMMPRKADNVNAKKPEIWVPGQTRNPEAYVLKDQESRYRQRHLDMI 271
Query: 234 ANPEVADVFRKRAKVVSVIRRTMDSLGFVEVETPVLQGAAGGAEARPFITYHNSLGRDLY 293
N EV +FR RAK++S +RR +D+ F+EVETP++ AGGA ARPF+T+HN L LY
Sbjct: 272 LNVEVRQIFRTRAKIISYVRRFLDNKNFLEVETPMMNMIAGGAAARPFVTHHNDLDMRLY 331
Query: 294 LRIATELHLKRMLVGGFEKVYEIGRIFRNEGISTRHNPEFTTIEMYEAYSDYQSMMNMAE 353
+RIA EL+LK+++VGG E+VYEIG+ FRNEGI HNPEFTT E Y A++DY +M M E
Sbjct: 332 MRIAPELYLKQLIVGGLERVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMEMTE 391
Query: 354 EIVAQCALAVHGKLTIDYQG-------VEICLERPWRRETMHNLVKEIAGVDFNELGNDL 406
+++ + G I Y +EI P+RR M ++++A L
Sbjct: 392 VMLSGMVKELTGGYKIKYNANGYDKDPIEIDFTPPFRRIEMIGELEKVA---------KL 442
Query: 407 KVAKQVTLDTLQKNLDNKDKASIEAC----------KSVGHLLNEVFEIFVEPKLIQPTF 456
+ K + + K L I+AC ++ LL+++ F+EP + PTF
Sbjct: 443 NIPKDLASEEANKYL-------IDACARFDVKCPPPQTTARLLDKLVGEFLEPTCVNPTF 495
Query: 457 VLDYPIEISPLAKPHRRSTGLTERFELFICGRELGNAFSELTDPIDQRGRLEDQIRQHEK 516
+++ P +SPLAK HR +GLTERFELFI EL NA++EL DP+ QR R DQ++ +
Sbjct: 496 IINQPEIMSPLAKWHRSKSGLTERFELFINKHELCNAYTELNDPVVQRQRFADQLKDRQS 555
Query: 517 KKAAISTNGDPKEGIENEDDSYEVTLDDDFLTALEYGMPPASGMGLGIDRLVMLLTNSPS 576
D + LD+ F ALEYG+ P G GLGIDRL MLLT+S +
Sbjct: 556 ------------------GDDEAMALDETFCNALEYGLAPTGGWGLGIDRLSMLLTDSLN 597
Query: 577 IRDVIAFPVLK 587
I++V+ FP ++
Sbjct: 598 IKEVLFFPAMR 608
>AT4G26870.1 | Symbols: | Class II aminoacyl-tRNA and biotin
synthetases superfamily protein | chr4:13505381-13507619
FORWARD LENGTH=532
Length = 532
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 108/486 (22%), Positives = 203/486 (41%), Gaps = 76/486 (15%)
Query: 126 VSVAGRIVARRAFGKLAFLTIRDDSGTIQLYCDKKRLIDDQFEQLK--AHVDIGDILGAK 183
VS+ GR+ R G F+ +R+ T+Q ++ R+ + + +K + + +++G
Sbjct: 88 VSIRGRLHKNRLVGTKLFVILRESGFTVQCVVEETRVGANMIKFVKQLSRESVVELIGVV 147
Query: 184 GTIKRTEKG---ELSVSVLSFAILTKSL--LPLPDKYHGLTDTDI--------------- 223
K+ G ++ + V L++SL LPL + +++DI
Sbjct: 148 SHPKKPLTGTTQQVEIHVRKMYCLSRSLPNLPLVVEDAARSESDIEKSGKDGKQAARVLQ 207
Query: 224 --RYRQRYVDMIANPEVADVFRKRAKVVSVIRRTMDSLGFVEVETPVLQGAAGGAEARPF 281
R R +D I P +FR + +V R + S GF+E+ TP L AG +E
Sbjct: 208 DTRLNNRVLD-IRTPANQAIFRIQCQVQIAFREYLQSKGFLEIHTPKL--IAGSSEGGSA 264
Query: 282 ITYHNSLGRDLYLRIATELHLKRMLVGGFEKVYEIGRIFRNE-GISTRHNPEFTTIEM-Y 339
+ + G+ L + +LH + + G +V+E+G +FR E + RH EF +++
Sbjct: 265 VFRLDYKGQPACLAQSPQLHKQMAICGDMRRVFEVGPVFRAEDSFTHRHLCEFVGLDVEM 324
Query: 340 EAYSDYQSMMNMAEEIVAQCALAVHGKLTIDYQGVEICLERPWRRETMHNLVKEIAGVDF 399
E Y +M++ E+ + + + + V + + +++ L + + + F
Sbjct: 325 EIRMHYSEIMDLVGELFPFIFTKIEERCPKELESV----RKQYPFQSLKFLPQTLR-LTF 379
Query: 400 NELGNDLKVAKQVTLDTLQKNLDNKDKASIEACKSVGHLLNEVFEIFVEPKLIQPTFVLD 459
E LK A + +D + E+ + +G L+ E ++ + +
Sbjct: 380 AEGIQMLKEAGE--------EVDPLGDLNTESERKLGQLVLEKYK-------TEFYMLHR 424
Query: 460 YPIEISPL-AKPHRRSTGLTERFELFICGRELGNAFSELTDPIDQRGRLEDQIRQHEKKK 518
YP + P P+ + + F++FI G E+ + + DP LE + R+
Sbjct: 425 YPSAVRPFYTMPYENDSNYSNSFDVFIRGEEIMSGAQRIHDP----ELLEKRARECGIDV 480
Query: 519 AAISTNGDPKEGIENEDDSYEVTLDDDFLTALEYGMPPASGMGLGIDRLVMLLTNSPSIR 578
IST ++ A YG PP G G+G++R+VMLL +IR
Sbjct: 481 KTIST----------------------YIDAFRYGAPPHGGFGVGLERVVMLLCALNNIR 518
Query: 579 DVIAFP 584
FP
Sbjct: 519 KTSLFP 524
>AT4G33760.1 | Symbols: | tRNA synthetase class II (D, K and N)
family protein | chr4:16189285-16193260 REVERSE
LENGTH=664
Length = 664
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 121/267 (45%), Gaps = 29/267 (10%)
Query: 120 NSENDHVSVAGRIVARRAFGKLAFLTIRDDSGTIQLYCDKKRLIDDQFEQLKAHVDIGD- 178
N V + G + R G L FL +RD +G +Q+ R + D+F + AH I D
Sbjct: 85 NDVGKRVHLCGWVALHRVHGGLTFLNLRDHTGIVQV-----RTLPDEFPE--AHGLINDM 137
Query: 179 ----ILGAKGTI---------KRTEKGELSVSVLSFAILTKSLLPLP------DKYHGLT 219
++ +GT+ K+ + G + V IL LP D+ L
Sbjct: 138 RLEYVVLVEGTVRSRPNESVNKKMKTGFVEVVAEHVEILNPVRTKLPFLVTTADENKDLI 197
Query: 220 DTDIRYRQRYVDMIANPEVADVFRKRAKVVSVIRRTM-DSLGFVEVETPVLQGAAGGAEA 278
+IR R R +D+ ++ + R VV +IRR + D GF+E+ETP+L +
Sbjct: 198 KEEIRLRFRCLDL-RRQQMKNNIVLRHNVVKLIRRYLEDRHGFIEIETPILSRSTPEGAR 256
Query: 279 RPFITYHNSLGRDLYLRIATELHLKRMLVGGFEKVYEIGRIFRNEGISTRHNPEFTTIEM 338
+ G L + +L + ++V GF+K Y+I R FR+E + PEFT ++M
Sbjct: 257 DYLVPSRIQSGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDM 316
Query: 339 YEAYSDYQSMMNMAEEIVAQCALAVHG 365
A+ + M+ + E+++ + + G
Sbjct: 317 EMAFMPMEDMLKLNEDLIRKVFSEIKG 343
>AT4G31180.2 | Symbols: | Class II aminoacyl-tRNA and biotin
synthetases superfamily protein | chr4:15156696-15159362
FORWARD LENGTH=558
Length = 558
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 117/540 (21%), Positives = 214/540 (39%), Gaps = 102/540 (18%)
Query: 84 ELRSKGLNPYAYGWDKTHSADQLQDIYKDLGNGEEANSENDHVSVAGRI-VARRAFGKLA 142
EL+S +P A W + + D+ DL E SE V + GR+ R KL
Sbjct: 74 ELQSSA-DPKAGKWIEAVEGKEWTDV-SDLVE-EMLESE---VLIRGRVHTNRPTSNKLG 127
Query: 143 FLTIRDDSGTIQLYC---DKKRLIDDQFEQLK--AHVDIGDILGAKGTIKRTEKG---EL 194
F+ +R+ T+Q +K ++ + + LK + D++G K G ++
Sbjct: 128 FVVLRESGSTVQCVVSQSEKTKVGANMVKYLKQLSRESFVDVIGVVTLPKEPLTGTTQQV 187
Query: 195 SVSVLSFAILTKSLLPLP----DKYHGLTD---------------TDIRYRQRYVDMIAN 235
+ V + KSL LP D D D R R +D+
Sbjct: 188 EIQVRKVYCINKSLAKLPLSVEDAARSEADIEASLQTPSPAARVNQDTRLNYRVLDL-RT 246
Query: 236 PEVADVFRKRAKVVSVIRRTMDSLGFVEVETP-VLQGAAGGAEARPFITYHNSLGRDLYL 294
P +F+ + +V R + FV + TP ++ G++ G A + Y G+ L
Sbjct: 247 PANQAIFQLQYEVEYAFREKLRFKNFVGIHTPKLMAGSSEGGSAVFRLEYK---GQPACL 303
Query: 295 RIATELHLKRMLVGGFEKVYEIGRIFRNE-GISTRHNPEFTTIEM-YEAYSDYQSMMNMA 352
+ +LH + + G +V+E+G +FR E + RH EF +++ E Y +M++
Sbjct: 304 AQSPQLHKQMAICGDLRRVFEVGPVFRAEDSFTHRHLCEFVGLDVEMEIRKHYSEIMDLV 363
Query: 353 EEIVAQCALAVHGKLTIDYQGVEICLERPWRRETMHNLVKEIAGVDFNELGNDLKVAKQV 412
+E+ +++ + + Q V + + E + L K + + F E LK A V
Sbjct: 364 DELFVFIFTSLNERCKKELQAV----GKQYPFEPLKFLPKTLR-LTFEEGVQMLKEAG-V 417
Query: 413 TLDTLQKNLDNKDKASIEACKSVGHLLNEVF--EIFV---EPKLIQPTFVL---DYPIEI 464
+D L + E+ + +G L+ E + E ++ PK ++P + + D P+
Sbjct: 418 EVDPL-------GDLNTESERKLGQLVLEKYNTEFYILHRYPKAVRPFYTMTCADNPL-- 468
Query: 465 SPLAKPHRRSTGLTERFELFICGRELGNAFSELTDPIDQRGRLEDQIRQHEKKKAAISTN 524
+ F++FI G E+ + + P ++ + + I
Sbjct: 469 ------------YSNSFDVFIRGEEIISGAQRVHIP---------EVLEQRAGECGI--- 504
Query: 525 GDPKEGIENEDDSYEVTLDDDFLTALEYGMPPASGMGLGIDRLVMLLTNSPSIRDVIAFP 584
+V ++ + YG P G G+G++R+VML +IR FP
Sbjct: 505 --------------DVKTISTYIDSFRYGAPLHGGFGVGLERVVMLFCALNNIRKTSLFP 550
>AT4G31180.1 | Symbols: | Class II aminoacyl-tRNA and biotin
synthetases superfamily protein | chr4:15156696-15159362
FORWARD LENGTH=558
Length = 558
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 117/540 (21%), Positives = 214/540 (39%), Gaps = 102/540 (18%)
Query: 84 ELRSKGLNPYAYGWDKTHSADQLQDIYKDLGNGEEANSENDHVSVAGRI-VARRAFGKLA 142
EL+S +P A W + + D+ DL E SE V + GR+ R KL
Sbjct: 74 ELQSSA-DPKAGKWIEAVEGKEWTDV-SDLVE-EMLESE---VLIRGRVHTNRPTSNKLG 127
Query: 143 FLTIRDDSGTIQLYC---DKKRLIDDQFEQLK--AHVDIGDILGAKGTIKRTEKG---EL 194
F+ +R+ T+Q +K ++ + + LK + D++G K G ++
Sbjct: 128 FVVLRESGSTVQCVVSQSEKTKVGANMVKYLKQLSRESFVDVIGVVTLPKEPLTGTTQQV 187
Query: 195 SVSVLSFAILTKSLLPLP----DKYHGLTD---------------TDIRYRQRYVDMIAN 235
+ V + KSL LP D D D R R +D+
Sbjct: 188 EIQVRKVYCINKSLAKLPLSVEDAARSEADIEASLQTPSPAARVNQDTRLNYRVLDL-RT 246
Query: 236 PEVADVFRKRAKVVSVIRRTMDSLGFVEVETP-VLQGAAGGAEARPFITYHNSLGRDLYL 294
P +F+ + +V R + FV + TP ++ G++ G A + Y G+ L
Sbjct: 247 PANQAIFQLQYEVEYAFREKLRFKNFVGIHTPKLMAGSSEGGSAVFRLEYK---GQPACL 303
Query: 295 RIATELHLKRMLVGGFEKVYEIGRIFRNE-GISTRHNPEFTTIEM-YEAYSDYQSMMNMA 352
+ +LH + + G +V+E+G +FR E + RH EF +++ E Y +M++
Sbjct: 304 AQSPQLHKQMAICGDLRRVFEVGPVFRAEDSFTHRHLCEFVGLDVEMEIRKHYSEIMDLV 363
Query: 353 EEIVAQCALAVHGKLTIDYQGVEICLERPWRRETMHNLVKEIAGVDFNELGNDLKVAKQV 412
+E+ +++ + + Q V + + E + L K + + F E LK A V
Sbjct: 364 DELFVFIFTSLNERCKKELQAV----GKQYPFEPLKFLPKTLR-LTFEEGVQMLKEAG-V 417
Query: 413 TLDTLQKNLDNKDKASIEACKSVGHLLNEVF--EIFV---EPKLIQPTFVL---DYPIEI 464
+D L + E+ + +G L+ E + E ++ PK ++P + + D P+
Sbjct: 418 EVDPL-------GDLNTESERKLGQLVLEKYNTEFYILHRYPKAVRPFYTMTCADNPL-- 468
Query: 465 SPLAKPHRRSTGLTERFELFICGRELGNAFSELTDPIDQRGRLEDQIRQHEKKKAAISTN 524
+ F++FI G E+ + + P ++ + + I
Sbjct: 469 ------------YSNSFDVFIRGEEIISGAQRVHIP---------EVLEQRAGECGI--- 504
Query: 525 GDPKEGIENEDDSYEVTLDDDFLTALEYGMPPASGMGLGIDRLVMLLTNSPSIRDVIAFP 584
+V ++ + YG P G G+G++R+VML +IR FP
Sbjct: 505 --------------DVKTISTYIDSFRYGAPLHGGFGVGLERVVMLFCALNNIRKTSLFP 550
>AT3G30805.1 | Symbols: | Class II aminoacyl-tRNA and biotin
synthetases superfamily protein | chr3:12488978-12489925
REVERSE LENGTH=166
Length = 166
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 536 DSYEVTLDDDFLTALEYGMPPASGMGLGIDRLVMLLTNSPSIR 578
D + +D+ F ALEYG+PP G G+GIDR +MLLT+S +I+
Sbjct: 76 DDEAMAMDETFCMALEYGLPPTGGWGMGIDRPLMLLTDSQNIK 118