Miyakogusa Predicted Gene

Lj2g3v0878910.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0878910.1 Non Chatacterized Hit- tr|I1N992|I1N992_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,93.1,0.0000002,seg,NULL,
gene.Ljchr2_pseudomol_20120830.path1.gene2582.1
         (59 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G12100.1 | Symbols:  | Cation efflux family protein | chr3:38...    55   1e-08
AT3G12100.2 | Symbols:  | Cation efflux family protein | chr3:38...    54   3e-08

>AT3G12100.1 | Symbols:  | Cation efflux family protein |
           chr3:3854741-3857270 REVERSE LENGTH=393
          Length = 393

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/29 (82%), Positives = 27/29 (93%)

Query: 31  YLIVSAVTNLFVNLIVVWFFRNYARINLA 59
           YLIVSAVTNL VNL+ VWFFRNYAR+N+A
Sbjct: 216 YLIVSAVTNLLVNLLGVWFFRNYARVNIA 244


>AT3G12100.2 | Symbols:  | Cation efflux family protein |
           chr3:3855105-3857270 REVERSE LENGTH=333
          Length = 333

 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 24/35 (68%), Positives = 29/35 (82%)

Query: 25  QKKELLYLIVSAVTNLFVNLIVVWFFRNYARINLA 59
           + +   YLIVSAVTNL VNL+ VWFFRNYAR+N+A
Sbjct: 210 ESEHKHYLIVSAVTNLLVNLLGVWFFRNYARVNIA 244