Miyakogusa Predicted Gene
- Lj2g3v0866680.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v0866680.1 Non Chatacterized Hit- tr|I3S499|I3S499_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,98.3,0,BRCT
domain,BRCT domain; no description,NULL; PTCB-BRCT,NULL; SUBFAMILY NOT
NAMED,NULL; DNA REPLICAT,NODE_73372_length_2005_cov_28.246384.path2.1
(529 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G26270.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 470 e-133
AT3G43930.1 | Symbols: | BRCT domain-containing DNA repair prot... 449 e-126
AT3G43930.2 | Symbols: | BRCT domain-containing DNA repair prot... 377 e-105
AT1G77320.1 | Symbols: MEI1 | transcription coactivators | chr1:... 64 3e-10
>AT2G26270.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; BEST Arabidopsis thaliana protein
match is: BRCT domain-containing DNA repair protein
(TAIR:AT3G43930.1); Has 29 Blast hits to 29 proteins in
9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr2:11184739-11187659 FORWARD
LENGTH=470
Length = 470
Score = 470 bits (1210), Expect = e-133, Method: Compositional matrix adjust.
Identities = 244/443 (55%), Positives = 314/443 (70%), Gaps = 13/443 (2%)
Query: 94 GRKLEHALKHGAKNGLLVVTLGWFVDSVRKNVRLTESHYSVKSYGDNNMRLVDFKLLTRY 153
GRK EH LKHGA+NGL VVT+GWFVDSV++N R++ES Y+VK N + + L+R
Sbjct: 34 GRKFEHTLKHGARNGLFVVTIGWFVDSVKRNFRMSESLYNVKQLRQNCEKGDE---LSRV 90
Query: 154 TEAENYCLPARIHETKHAHSVEEIQRFSGR-------ESTLSGCSIYVDPGISSELCTKV 206
+ E C P +I S + Q S + +L+ +YVD IS EL KV
Sbjct: 91 FDLETICRPRQIQAVHFGTSTKNHQVSSSGTESGTSVDMSLADHCMYVDSDISDELRLKV 150
Query: 207 VETASREGARLVEQWFVGCNVSHVVTEGTSIQRYLGYSSNLVTPLWILKTAKEKNVQRLV 266
++ A +GA++++ WF+GCN S VV EG SIQRYLG++ +V+PLW+LKT EK+ QRLV
Sbjct: 151 LKVAGEQGAKVIDSWFIGCNASFVVCEGASIQRYLGHAKTIVSPLWVLKTV-EKHRQRLV 209
Query: 267 HMSADLAKQVGLMLEDINNGISGKEVIKQKVHGDLQGSKSEVSYKERQQIVNSAKIGVRN 326
HMS DLA+Q+GLMLE+ +G + +++ Q + S+S +S +ER++ VN AK GVR
Sbjct: 210 HMSPDLARQLGLMLENFEDGAANEKISGQGNSQEAFKSRS-LSKQERKETVNIAKTGVRR 268
Query: 327 RRGRRMQTCQTPIRHITPNNILDSISWTISEPNSTASIYTDSFSVEDPSENCNSIFFESK 386
RR R MQTCQ PIR IT ++LD+I WTISE S A+I+TDS S D SE S+ +
Sbjct: 269 RRARHMQTCQNPIRRITQYSLLDNICWTISEAASAATIFTDS-SSRDISEPQPSVVQDGI 327
Query: 387 GDGKDSEASFANSTRPLTESEKSELIFKNHFLTILFPIDRFSEMGPSSRTFFSHSGFTCL 446
G D ASF+NSTR LTESEK+E+IFK+ FLTIL+P DRFSEMGPSSRT+FS SGFTCL
Sbjct: 328 DKGLDPVASFSNSTRALTESEKTEVIFKDSFLTILYPADRFSEMGPSSRTYFSDSGFTCL 387
Query: 447 QVLDHIQAFNQENMSSQEIEAAIHTDSRHADRLRSVYSSKETAEHGCVMFKRIEFIGSRT 506
Q+LD+I F QEN+ EIE AIHTDSRHADRLR+VY SKET++ GC++F RIE +GSR
Sbjct: 388 QILDYIYRFYQENLPDHEIEVAIHTDSRHADRLRTVYCSKETSDEGCLVFPRIELLGSRK 447
Query: 507 SFEMLKRVAGDNNSNVYELLLRA 529
SFEMLKRV G+NNSNVYEL++RA
Sbjct: 448 SFEMLKRVNGENNSNVYELMIRA 470
>AT3G43930.1 | Symbols: | BRCT domain-containing DNA repair protein
| chr3:15760948-15763263 REVERSE LENGTH=502
Length = 502
Score = 449 bits (1155), Expect = e-126, Method: Compositional matrix adjust.
Identities = 255/540 (47%), Positives = 342/540 (63%), Gaps = 49/540 (9%)
Query: 1 MGGDGIVEVVGGKGCSRL---FSSSFRGLQPMEXXXXXXXXXXXX-------XXXPFAGL 50
M G EV+ K CS+L F+ S RG + E PF+GL
Sbjct: 1 MEGVRRAEVIDTKRCSKLRVDFTPSLRGSRISEPFSPATTTTTTSRFHPPVRSDGPFSGL 60
Query: 51 VICVTGLSKETRNQVREATERLGGQYSSNLHPQCTHLVVQSFGGRKLEHALKHGAKNGLL 110
+ICVTGLSKE R QV+EATERLGG+YS+ LH CTHLVVQ++ GRK EHALKHG + L
Sbjct: 61 IICVTGLSKEARKQVKEATERLGGEYSALLHSLCTHLVVQNYDGRKFEHALKHGRRETLY 120
Query: 111 VVTLGWFVDSVRKNVRLTESHYSVKSYGDNNMRLVDFKLLTRYTEAENYCLPARIHETKH 170
+VTLGWFVDSV +NV+L+ES Y+VK+ ++ + L + Y + +
Sbjct: 121 IVTLGWFVDSVCRNVKLSESFYAVKN--PEETKVNEDGLKSVYA----------VEKLHR 168
Query: 171 AHSVEEIQRFSGRESTLSGCSIYVDPGISSELCTKVVETASREGARLVEQWFVGCNVSHV 230
V+ I+ ++ LSG S+++D IS E+ +V + A GA+L+ QWF+GCN SHV
Sbjct: 169 GGGVQGIEVTGSKDLALSGYSVFIDADISEEVRRQVSQVAVEGGAKLMTQWFIGCNASHV 228
Query: 231 VTEGTSIQRYLGYSSNLVTPLWILKTAKEKNVQRLVHMSADLAKQVGLMLEDINNGISGK 290
V EG S+ RYLG+SSNLVTPLW+ KT +EK Q LV MS DLA+ + M+E++ GK
Sbjct: 229 VCEGGSVLRYLGHSSNLVTPLWLQKTLEEKPTQNLVQMSDDLARDLRTMIENL-----GK 283
Query: 291 EVIKQKVHGDLQGSKSEVSYKERQQIVNSAKIGVRNRRGRRMQTCQTPIRHITPNNILDS 350
E + +KERQ+IV SAK V NR + +T P + +++LDS
Sbjct: 284 ESPTDRTR----------PHKERQKIVESAKKTVTNRHAKMGKTLIQP---LNLSSLLDS 330
Query: 351 ISWTISEPNSTASIYTDSFSVEDPSENCN-SIFFESKGDGKDSEASFANSTRPLTESEKS 409
ISWTISEP STAS+ DSFS D E + S FF++K S SF +S R LTESE+
Sbjct: 331 ISWTISEPTSTASVIIDSFSNNDDIERKSLSAFFDAK-----SNDSFTHSMRLLTESERM 385
Query: 410 ELIFKNHFLTILFPIDRFSEMGPSSRTFFSHSGFTCLQVLDHIQAFNQENMSSQEIEAAI 469
EL++KNHF+T+L PID + EMGPSSR++FS +GFTC Q+L +I AF QENMS +E++AAI
Sbjct: 386 ELVYKNHFITLLLPIDWYGEMGPSSRSYFSETGFTCQQILQNIYAFYQENMSEEELKAAI 445
Query: 470 HTDSRHADRLRSVYSSKETAEHGCVMFKRIEFIGSRTSFEMLKRVAGDNNSNVYELLLRA 529
HT+SRH+++LR+ S + G +FKRI+F+GS FEMLKRV+ N SNVYEL+++A
Sbjct: 446 HTNSRHSEKLRAADS---VMKGGKTVFKRIQFLGSEKGFEMLKRVSSFNCSNVYELIIKA 502
>AT3G43930.2 | Symbols: | BRCT domain-containing DNA repair protein
| chr3:15761205-15763263 REVERSE LENGTH=444
Length = 444
Score = 377 bits (969), Expect = e-105, Method: Compositional matrix adjust.
Identities = 219/473 (46%), Positives = 290/473 (61%), Gaps = 46/473 (9%)
Query: 1 MGGDGIVEVVGGKGCSRL---FSSSFRGLQPMEXXXXXXXXXXXX-------XXXPFAGL 50
M G EV+ K CS+L F+ S RG + E PF+GL
Sbjct: 1 MEGVRRAEVIDTKRCSKLRVDFTPSLRGSRISEPFSPATTTTTTSRFHPPVRSDGPFSGL 60
Query: 51 VICVTGLSKETRNQVREATERLGGQYSSNLHPQCTHLVVQSFGGRKLEHALKHGAKNGLL 110
+ICVTGLSKE R QV+EATERLGG+YS+ LH CTHLVVQ++ GRK EHALKHG + L
Sbjct: 61 IICVTGLSKEARKQVKEATERLGGEYSALLHSLCTHLVVQNYDGRKFEHALKHGRRETLY 120
Query: 111 VVTLGWFVDSVRKNVRLTESHYSVKSYGDNNMRLVDFKLLTRYTEAENYCLPARIHETKH 170
+VTLGWFVDSV +NV+L+ES Y+VK+ ++ + L + Y + +
Sbjct: 121 IVTLGWFVDSVCRNVKLSESFYAVKN--PEETKVNEDGLKSVYA----------VEKLHR 168
Query: 171 AHSVEEIQRFSGRESTLSGCSIYVDPGISSELCTKVVETASREGARLVEQWFVGCNVSHV 230
V+ I+ ++ LSG S+++D IS E+ +V + A GA+L+ QWF+GCN SHV
Sbjct: 169 GGGVQGIEVTGSKDLALSGYSVFIDADISEEVRRQVSQVAVEGGAKLMTQWFIGCNASHV 228
Query: 231 VTEGTSIQRYLGYSSNLVTPLWILKTAKEKNVQRLVHMSADLAKQVGLMLEDINNGISGK 290
V EG S+ RYLG+SSNLVTPLW+ KT +EK Q LV MS DLA+ + M+E++ GK
Sbjct: 229 VCEGGSVLRYLGHSSNLVTPLWLQKTLEEKPTQNLVQMSDDLARDLRTMIENL-----GK 283
Query: 291 EVIKQKVHGDLQGSKSEVSYKERQQIVNSAKIGVRNRRGRRMQTCQTPIRHITPNNILDS 350
E + +KERQ+IV SAK V NR + +T P + +++LDS
Sbjct: 284 ESPTDRTR----------PHKERQKIVESAKKTVTNRHAKMGKTLIQP---LNLSSLLDS 330
Query: 351 ISWTISEPNSTASIYTDSFSVEDPSENCN-SIFFESKGDGKDSEASFANSTRPLTESEKS 409
ISWTISEP STAS+ DSFS D E + S FF++K S SF +S R LTESE+
Sbjct: 331 ISWTISEPTSTASVIIDSFSNNDDIERKSLSAFFDAK-----SNDSFTHSMRLLTESERM 385
Query: 410 ELIFKNHFLTILFPIDRFSEMGPSSRTFFSHSGFTCLQVLDHIQAFNQENMSS 462
EL++KNHF+T+L PID + EMGPSSR++FS +GFTC Q+L +I AF Q MSS
Sbjct: 386 ELVYKNHFITLLLPIDWYGEMGPSSRSYFSETGFTCQQILQNIYAFYQVAMSS 438
>AT1G77320.1 | Symbols: MEI1 | transcription coactivators |
chr1:29056740-29062710 FORWARD LENGTH=972
Length = 972
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 46 PFAGLVICVTGLSKETRNQVREATERLGGQYSSNLHPQCTHLVVQSFGGRKLEHALKHGA 105
PF+GL ICVT + + R + + GG YS+ L CTHL+ + G K + A K G
Sbjct: 184 PFSGLTICVTRIPADERKGMEKVISEYGGSYSAELTKSCTHLIADAAEGDKYKVARKWGH 243
Query: 106 KNGLLVVTLGWFVDSVRKNVRLTESHYSV 134
+ +VT WF S+ K V L E Y V
Sbjct: 244 ---IQIVTRKWFQQSIDKKVCLNEESYPV 269