Miyakogusa Predicted Gene

Lj2g3v0856510.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0856510.1 tr|Q9C589|Q9C589_ARATH At5g21280 OS=Arabidopsis
thaliana GN=At5g21280 PE=2 SV=1,51.85,2e-17,seg,NULL;
coiled-coil,NULL,CUFF.35581.1
         (394 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G21280.1 | Symbols:  | hydroxyproline-rich glycoprotein famil...    84   2e-16

>AT5G21280.1 | Symbols:  | hydroxyproline-rich glycoprotein family
           protein | chr5:7264094-7265514 REVERSE LENGTH=302
          Length = 302

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/113 (46%), Positives = 63/113 (55%), Gaps = 23/113 (20%)

Query: 20  LSRNLEEEPPFSGAYMRSLVKQ-----LRTNDQGCVVNSDASSHGQNLTKHGKIGKACXX 74
           + R+ ++EP  S  Y+RSLVKQ                +D S  G+  T+  K       
Sbjct: 1   MVRSNKQEPRVSSTYIRSLVKQQLAYSTTMTTTTTTTTNDGSGGGKTQTQTHK------- 53

Query: 75  XXXXXXXXXXXXXVRRRLHTSRPYQERLLNMAEARREIVTALKFHRASMKEAS 127
                        VRRRLHTSRPYQERLLNMAEARREIVTALK HRASM++A+
Sbjct: 54  -----------KQVRRRLHTSRPYQERLLNMAEARREIVTALKQHRASMRQAT 95