Miyakogusa Predicted Gene

Lj2g3v0855300.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0855300.1 Non Chatacterized Hit- tr|I1J4K0|I1J4K0_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
GN=G,65.87,0,seg,NULL; RNA-DEPENDENT RNA POLYMERASE,RNA-dependent RNA
polymerase, eukaryotic-type; coiled-coil,NU,CUFF.35566.1
         (975 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G19930.1 | Symbols:  | RNA-dependent RNA polymerase family pr...   820   0.0  
AT2G19910.1 | Symbols:  | RNA-dependent RNA polymerase family pr...   804   0.0  
AT2G19920.1 | Symbols:  | RNA-dependent RNA polymerase family pr...   741   0.0  
AT1G14790.1 | Symbols: RDR1, ATRDRP1 | RNA-dependent RNA polymer...   102   2e-21
AT3G49500.1 | Symbols: RDR6, SGS2, SDE1 | RNA-dependent RNA poly...    88   3e-17
AT4G11130.1 | Symbols: RDR2, SMD1 | RNA-dependent RNA polymerase...    77   6e-14

>AT2G19930.1 | Symbols:  | RNA-dependent RNA polymerase family
           protein | chr2:8607533-8612441 REVERSE LENGTH=977
          Length = 977

 Score =  820 bits (2117), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/1000 (45%), Positives = 626/1000 (62%), Gaps = 63/1000 (6%)

Query: 6   VLLPASVENMINEICEKQRQSPPDSAVRRGLAAIGEEGALQLLLTIS--KSKIKHTFSSF 63
           + L   +E  +  I  K   +P +   R+ L++I E    +L+  +   ++ + +   SF
Sbjct: 10  IALSGRIETALENIYRKHNLTPINDETRQRLSSIPENLGFELVRKVFSLQAGLIYNLDSF 69

Query: 64  IVHMLKNHNPHSVYLSPSQN-SVXXXXXXXXXTAMMTTMNDA------------------ 104
           IV  +      + Y  P+ + S             M+  +DA                  
Sbjct: 70  IVSKVNQAVSFTGYPQPANSLSPSGRHVSRVLQEEMSVDSDAPSPKSLKSEDKGGSLHIP 129

Query: 105 -LSALGELEFRKAFLLLSYIGRESLENVVTGDYIRSLKDLPMGRFEEVIWGDIGSNHXXX 163
            L ALGELEF+K FLLLSYI  + +  V+T D IR  KDLPM  +E  +W  +G ++   
Sbjct: 130 QLVALGELEFKKVFLLLSYIPGQHVGQVITADEIRLWKDLPMVEYEAAVWDRLGRHYCPQ 189

Query: 164 XXXXXXXXXXXSGRPHVYQCFVSPDGSLRFK------GPILQNNTQTHLHKTLGDDNVLV 217
                      SG+ H YQC V+P+GS  FK      GP+L++ T THLHK LGDDNVL 
Sbjct: 190 KDRRMLQWD--SGKTHYYQCNVAPNGSYTFKVLSALQGPLLEH-TGTHLHKVLGDDNVLT 246

Query: 218 VKFAEDKNGRNLKTNAQDAVALYGKFGKEGIRVGLRLYRFFVFKDSGKEEKKKDPTASSV 277
           VKFA+ +  ++  T + D    Y    K GI +GLR Y+FFVFKD GKEEKKKD +   V
Sbjct: 247 VKFADVQ--KSSSTYSIDHYFTYKGIAKNGIMIGLRRYQFFVFKDGGKEEKKKDLSTKKV 304

Query: 278 KCYFVRMESHCSADERTFYILSKKTMFEARSLFMHAHLLPSIDKFMARFSLLLSKTLKLD 337
           KCYF+R +S    D +  YIL+ K+++EAR  FMH H  P++  +MARFSL+LSKT  L+
Sbjct: 305 KCYFIRTDSTAFYDMQNPYILTGKSIYEARMHFMHVHRAPTLANYMARFSLILSKTKTLE 364

Query: 338 IDLTTVNVQKIQDIPCLDENDNAVY-HNEKPCILTDGTGFISEDLAILCPNDVLKGMNLK 396
           +D+T +   +I DI C D++   V   N+KPCI +DGTG+ISEDLA +CP ++ KG  L+
Sbjct: 365 VDMTGITFDQIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISEDLARMCPLNIFKGKCLR 424

Query: 397 NKSKEISNLVELVDMSKAVGEAALSPHQPPLLIQCRIFHMGRAIKGTLLVNRKLPSRTIH 456
                          S+++ EA      PPLLIQ R+F+ G A+KGT L+N+KL  RT+ 
Sbjct: 425 ---------------SESIQEACY--QDPPLLIQFRMFYDGYAVKGTFLLNKKLCPRTVQ 467

Query: 457 VRPSMIKVETDMSLQNIQSINSMEVVNTSQKPNRTYLSKYLIALLSYGGVPNQFFMEVLQ 516
           VRPSMIKV  D SL N  + N++EVV TS  P RT LSK L+ALLSYGG+PN+FF+++L 
Sbjct: 468 VRPSMIKVSKDPSLSNFSTFNALEVVTTSNPPKRTKLSKNLVALLSYGGIPNEFFLDILL 527

Query: 517 SNLEDADHVYSNKRTALRATVNHGEMDDYIAAGMILCGIPLDEPFLQNHLSKLAIEEKKR 576
           + LE++  ++ NKR AL A +N+GEMDD  AA MIL GIPLDEP L+N+LS L   EK  
Sbjct: 528 NTLEESKSIFYNKRAALNAALNYGEMDDQNAAQMILVGIPLDEPHLKNYLSILLKTEKND 587

Query: 577 LRGGRLYLPDCFYLMGTVDPTGRLKANEVCIIHENGQITGDVLVYRNPGLHFGDIHIMHA 636
           L+ G+L + + +YLMGTVDPTG LK +EVC+I E+GQI+G+VLVYRNPGLHFGDIHI+ A
Sbjct: 588 LKAGKLPVTESYYLMGTVDPTGALKEDEVCVILESGQISGEVLVYRNPGLHFGDIHILKA 647

Query: 637 RYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVSKHPQLLQHFRKSDPWI 696
            YV+ LE YVG+SK+A+FFP  GPRS+ DEIAGGDFDGD+Y++S++P+LL++F+ S+PW+
Sbjct: 648 TYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLENFKPSEPWV 707

Query: 697 ESPAPCNSIRLDSTIKKPSGLSAXXXXXXXXXXXXXTRFQPSNTIGAAADSWMALMDRLL 756
               P  S    ++ + PS LS                F  SN IG AADSW+ +MDR L
Sbjct: 708 SLTPPSKS----NSGRAPSQLSPEELEEELFEMFLTAGFHASNVIGIAADSWLTIMDRFL 763

Query: 757 TLRDDCTKENEKQHVKENILKLIDIYYQAIDAPKQGGGKLRIPNDLTVEMYPHYMERGRS 816
            L DD  +  EK  +K+ +L+LIDIYY A+DAPK+ G K+ +PN L  +++PHYMER + 
Sbjct: 764 ILGDD--RAEEKAEMKKKMLELIDIYYDALDAPKK-GDKVYLPNKLKPDIFPHYMERDKK 820

Query: 817 FTSTSILGLIYDEVGRWQTNDDMPGKDIRKLPCFDAE-IPMDCMQKWEELYRNYREDMTN 875
           F STSILGLI+D V    T +  P  +I KLPCF+ E +    MQK    Y NYR +MT 
Sbjct: 821 FQSTSILGLIFDFVKSQTTEEPSPSSEISKLPCFEDEPVSEFHMQKCRLWYDNYRTEMTQ 880

Query: 876 ALKDPLKANDEADEVIKMYKQKLYGAATMEDSPKNISDIYKEALAVYHVTYNFAILCKSV 935
           A+K     ++ A+EVI+ YKQ+ YGAA  EDS K++ ++Y +ALA+Y + Y++AI    V
Sbjct: 881 AMKT--DKDESANEVIQRYKQEFYGAAGFEDSKKSLEELYPQALALYKIVYDYAIHA-GV 937

Query: 936 GKCGFAWKVAGSALMSLYTIKQNQ-RTLTCAPSVLREIFG 974
            KC F WKVAG  L   Y  K+ Q + L CAPSVL+E++G
Sbjct: 938 SKCRFVWKVAGPVLCRFYLNKKMQEKCLVCAPSVLKELWG 977


>AT2G19910.1 | Symbols:  | RNA-dependent RNA polymerase family
           protein | chr2:8595820-8600757 REVERSE LENGTH=992
          Length = 992

 Score =  804 bits (2076), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/1002 (46%), Positives = 619/1002 (61%), Gaps = 57/1002 (5%)

Query: 6   VLLPASVENMINEICEKQRQSPPDSA-VRRGLAAIGEEGALQLLLTISKSKIKHTFSSFI 64
           + L  SVE M+ +I EK     P S   RR L++I EE AL+ L  +       T    I
Sbjct: 15  IALLGSVETMLEKIYEKHNHRLPISVETRRKLSSISEELALETLRKVFNKPYLKTLDGLI 74

Query: 65  VHMLKNHNP--HSVYLSPSQNSVXXXXXXXXXTA-----------------MMTTMNDA- 104
           ++ +K       S  LSP ++ V         +                  M    N   
Sbjct: 75  MYFVKGTVTVDGSPRLSPGESPVQSPRTPAKKSCRASQDVSLDLETPSPKFMKREENGGS 134

Query: 105 -----LSALGELEFRKAFLLLSYIGRESL-ENVVTGDYIRSLKDLPMGRFEEVIWGDIGS 158
                L ALGELEF+KAFLLLSYIG ESL E V++GD IR  KDLPM  +E  +W  +G 
Sbjct: 135 KYIPPLLALGELEFKKAFLLLSYIGGESLVEEVISGDQIRKWKDLPMVSYEAAVWNRLGQ 194

Query: 159 NHXXXXXXXXXXXXXXSGRPHVYQCFVSPDGSLRFKGPILQNNTQTHLHKTLGDDNVLVV 218
            +              SG  H YQC V+ DGS +FKG +L+N T THLHK LGDDNVL V
Sbjct: 195 RYCSPKERRRPLEGD-SGMTHYYQCHVATDGSYKFKGHLLEN-TGTHLHKVLGDDNVLTV 252

Query: 219 KFAEDKNGRNLKTNAQDAVALYGKFGKEGIRVGLRLYRFFVFKDSGKEEKKKDPTASSVK 278
           KF  DK    ++T   D  + Y    K GI VGLR YRFFVFKD GKEEKKKD +   VK
Sbjct: 253 KF--DKV-LGVETYCNDLYSTYKGIAKNGIMVGLRRYRFFVFKDGGKEEKKKDVSTKGVK 309

Query: 279 CYFVRMESHCSADERTFYILSKKTMFEARSLFMHAHLLPSIDKFMARFSLLLSKTLKLDI 338
           CYF+R +S  S D +  YI + K+M EAR  FMH + L S+  +M+RFSL+LSKT  L++
Sbjct: 310 CYFIRTDSTASIDMQNPYIFAGKSMHEARMHFMHVNTLSSLPNYMSRFSLILSKTKTLEV 369

Query: 339 DLTTVNVQKIQDIPCLDENDNAVY-HNEKPCILTDGTGFISEDLAILCPNDVLKGMNLKN 397
           D+T +  ++I DI C D++D  V   N KPCI +DGTG+ISEDLA +CP ++ KG ++++
Sbjct: 370 DMTGITFEQIDDIHCHDQDDKDVLDKNGKPCIHSDGTGYISEDLARMCPVNIFKGKSMRS 429

Query: 398 KSKEISNLVELVDMSKAVGEAALSPHQPPLLIQCRIFHMGRAIKGTLLVNRKLPSRTIHV 457
            + +  NL          G+      +PPLLIQ RIF+ G A+KGT L N+KLP RT+ V
Sbjct: 430 NNIQSKNL-------NFEGQGPCG-QEPPLLIQFRIFYNGYAVKGTFLTNKKLPPRTVQV 481

Query: 458 RPSMIKVETDMSLQNIQSINSMEVVNTSQKPNRTYLSKYLIALLSYGGVPNQFFMEVLQS 517
           RPSMIKV  D +L N+ + NS+EVV TS  P +  LS+ L+ALLSYGGVPN FF+ +L++
Sbjct: 482 RPSMIKVYEDRTLSNLSTFNSLEVVTTSNPPRKARLSRNLVALLSYGGVPNDFFLNILRN 541

Query: 518 NLEDADHVYSNKRTALRATVNHGEMDDYIAAGMILCGIPLDEPFLQNHLSKLAIEEKKRL 577
            LE++  ++ ++R A +A +N+G  DD   A MIL GIPLDEP+L++ LS L   E+  L
Sbjct: 542 TLEESKTIFYSERAAFKAAINYG--DDQYTADMILVGIPLDEPYLKDRLSYLLKTERNAL 599

Query: 578 RGGRLYLPDCFYLMGTVDPTGRLKANEVCIIHENGQITGDVLVYRNPGLHFGDIHIMHAR 637
           + GR  + + +Y+MGTVDPTG LK NE+C+I  +GQI+GDVLVYRNPGLHFGDIH++ A 
Sbjct: 600 KAGRFPIDESYYIMGTVDPTGELKENEICVILHSGQISGDVLVYRNPGLHFGDIHVLKAT 659

Query: 638 YVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVSKHPQLLQHFRKSDPWIE 697
           YV+ LE YVG++K+A+FFP  GPRS+ DEIAGGDFDGD+Y++S++P+LL+HF+ S+PW+ 
Sbjct: 660 YVKALEDYVGNAKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHFKPSEPWVS 719

Query: 698 SPAPCNSIRLDSTIKKPSGLSAXXXXXXXXXXXXXTRFQPSNTIGAAADSWMALMDRLLT 757
           S  P          +KPS LS               RF   + IG AAD W+ +MD  LT
Sbjct: 720 SSKPSKIY----CGRKPSELSEEELEEELFKMFLKARFCKRDVIGMAADCWLGIMDPFLT 775

Query: 758 LRDDCTKENEKQHVKENILKLIDIYYQAIDAPKQGGGKLRIPNDLTVEMYPHYMERG--R 815
           L D+  K  EK   K+NILKLIDIYY A+DAPK+ G K+ +P DL ++ +PHYMER   R
Sbjct: 776 LGDESAK--EKYERKKNILKLIDIYYDALDAPKK-GAKVDLPPDLEIKNFPHYMERDPKR 832

Query: 816 SFTSTSILGLIYDEVGRWQTNDDMPGKDIRKLPCFDAE-IPMDCMQKWEELYRNYREDMT 874
            F STSILGLI+D V      ++ P  +I KL  F+ E +P   M K+   Y NYR +M+
Sbjct: 833 DFRSTSILGLIFDTVDS-HNAEEPPPSEISKLWYFEDEPVPKSHMDKFTSWYENYRSEMS 891

Query: 875 NAL--KDPLKANDEADEVIKMYKQKLYGAATMEDSPKNISDIYKEALAVYHVTYNFAILC 932
            A+   D +K N   +EVI+ YKQ  YGAA  EDS K++ ++Y +ALA+Y+V Y++AI  
Sbjct: 892 QAMMETDKVKRNQLTNEVIQRYKQDFYGAAGFEDSNKSLEELYPQALALYNVVYDYAIQ- 950

Query: 933 KSVGKCGFAWKVAGSALMSLYTIKQNQRTLTCAPSVLREIFG 974
           + V KC FAW VAG  L   Y  K   +++  + SVL+++ G
Sbjct: 951 EGVAKCTFAWNVAGPVLCKFYLKKTKDKSVVASTSVLKKLLG 992


>AT2G19920.1 | Symbols:  | RNA-dependent RNA polymerase family
           protein | chr2:8602222-8606887 REVERSE LENGTH=927
          Length = 927

 Score =  741 bits (1913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/949 (44%), Positives = 572/949 (60%), Gaps = 70/949 (7%)

Query: 6   VLLPASVENMINEICEKQRQSPP-DSAVRRGLAAIGEEGALQLLLTISKSKIKHTFSSFI 64
           + L  SVE M+ ++  K    PP     RR L++I EE AL+ L  +       T    I
Sbjct: 20  IALLGSVETMLEKVYGKHNHHPPIKVETRRRLSSISEELALETLRKVLNMPNVKTLDGII 79

Query: 65  VHMLKN--------------------HNPHSVYLSPSQNSVXXXXXXXXXTAMMTTMN-- 102
           ++ L +                      P       SQ  V           +    N  
Sbjct: 80  IYFLNDAVTVDGSPRLWSGESPVQFPRTPGKKSCRASQAEVSLDREDPSPKFLRGDENGE 139

Query: 103 ----DALSALGELEFRKAFLLLSYIGRESLENVVTGDYIRSLKDLPMGRFEEVIWGDIGS 158
                 L ALGELEF+KAFLLL+Y+G +SL  V++GD IR  KDLPM  +E  +W  +G 
Sbjct: 140 SKHISLLLALGELEFKKAFLLLTYLGGKSLGEVISGDEIRQWKDLPMVAYERAVWFKLGQ 199

Query: 159 NHXXXXXXXXXXXXXXSGRPHVYQCFVSPDGSLRFKGPILQNNTQTHLHKTLGDDNVLVV 218
           N               SG+ H YQC V+PDGS R KG  L+N T THLHK LGDDNVL V
Sbjct: 200 NEERMQLESD------SGKTHYYQCHVAPDGSYRLKGYFLEN-TGTHLHKVLGDDNVLTV 252

Query: 219 KFAEDKNGRNLKTNAQDAVALYGKFGKEGIRVGLRLYRFFVFKDSGKEEKKKDPTASSVK 278
           +F +        T   +  + Y +  K GI VGLR Y+FFVFKD GK EKKK  +   VK
Sbjct: 253 RFDQLPKE---STYCDNPYSKYKEIAKNGIMVGLRRYQFFVFKDGGKAEKKKRNSTKQVK 309

Query: 279 CYFVRMESHCSADERTFYILSKKTMFEARSLFMHAHLLPSIDKFMARFSLLLSKTLKLDI 338
           CYF+R  S  S+D    YILS  ++ EAR  FMH H LPS   +MARFSL+LSKT KL++
Sbjct: 310 CYFIRTGSTASSDMENPYILSGMSIHEARMHFMHVHTLPSPANYMARFSLILSKTKKLEV 369

Query: 339 DLTTVNVQKIQDIPCLDENDNAVY-HNEKPCILTDGTGFISEDLAILCPNDVLKGMNLKN 397
           D+T + V +I DI C D+++N V   N KP I +DGTG+ISEDLA +CP ++ KG +++ 
Sbjct: 370 DMTEITVMQIDDIHCHDQSNNDVLDKNGKPRIHSDGTGYISEDLARMCPLNIFKGKSMR- 428

Query: 398 KSKEISNLVELVDMSKAVGEAALSPHQPPLLIQCRIFHMGRAIKGTLLVNRKLPSRTIHV 457
                SN ++                +PPLLIQ R+F+ G A+KG  L+N+ LP +T+ V
Sbjct: 429 -----SNNIQ-----------GTCVQEPPLLIQIRMFNDGSAVKGIFLLNKNLPPQTVQV 472

Query: 458 RPSMIKVETDMSLQNIQSINSMEVVNTSQKPNRTYLSKYLIALLSYGGVPNQFFMEVLQS 517
           RPSMIKV  D +L N  + NS+EVV TS  P R  LSK L+ALLSYGGVPN FF+++L +
Sbjct: 473 RPSMIKVYKDKNLSNFSTFNSLEVVTTSNPPKRAKLSKNLVALLSYGGVPNDFFLDILLN 532

Query: 518 NLEDADHVYSNKRTALRATVNHGEMDDYIAAGMILCGIPLDEPFLQNHLSKLAIEEKKRL 577
            LE    ++   R A +A +++G MDD  A  MI+ GIPLDEP+L+++LSKL   EK  L
Sbjct: 533 TLEKKKTIFFKVRAAGKAALHYGNMDDKNALQMIMAGIPLDEPYLKHYLSKLLKLEKDDL 592

Query: 578 RGGRLYLPDCFYLMGTVDPTGRLKANEVCIIHENGQITGDVLVYRNPGLHFGDIHIMHAR 637
           + G+L + + +YLMGTVDPTG LK +EV  + +    + DVLVYRNPGLHFGDIHI+ A 
Sbjct: 593 KAGKLPIDESYYLMGTVDPTGELKEDEVSGLAK----SQDVLVYRNPGLHFGDIHILKAT 648

Query: 638 YVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVSKHPQLLQHFRKSDPWIE 697
           YV+ LE YVG+SKY +FFP  GPRS+ DEIAGGDFDGD+Y++S++P+LL+H++ S+PW+ 
Sbjct: 649 YVKSLEQYVGNSKYGVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHYKPSEPWVS 708

Query: 698 SPAPCNSIRLDSTIKKPSGLSAXXXXXXXXXXXXXTRFQPSNTIGAAADSWMALMDRLLT 757
           S +P + I    T ++PS LS              T F PS+ IG AADSW+A+MDR LT
Sbjct: 709 S-SPRSKIY---TGRQPSELSPEQLEEELFKIFLKTGFSPSSVIGQAADSWLAIMDRFLT 764

Query: 758 LRDDCTKENEKQHVKENILKLIDIYYQAIDAPKQGGGKLRIPNDLTVEMYPHYMERGRSF 817
           L D+  KE  +   K   LKL DIYY AIDAPK  G ++ +P D+ V+++PHYMER ++F
Sbjct: 765 LGDENVKEKAEMKKKM--LKLTDIYYDAIDAPKT-GTEVNLPLDVKVDLFPHYMERNKTF 821

Query: 818 TSTSILGLIYDEVGRWQTNDDMPGKDIRKLPCFDAE-IPMDCMQKWEELYRNYREDMTNA 876
            STSILGLI+D V      D  P   I KL CF+ E +    M+K +  +++YR++M  A
Sbjct: 822 KSTSILGLIFDTVDFHNAEDTTPS-GISKLQCFEDEPVSEFDMEKCKLWHKDYRKEMCQA 880

Query: 877 LKDPLKANDEADEVIKMYKQKLYGAATMEDSPKNISDIYKEALAVYHVT 925
           +      +D  +EVI+ YKQ+ Y AA  ++S K + ++Y +ALA+Y+VT
Sbjct: 881 MNS--DDDDSCNEVIQKYKQEFYSAAGFKESKKILEELYPKALALYNVT 927


>AT1G14790.1 | Symbols: RDR1, ATRDRP1 | RNA-dependent RNA polymerase
           1 | chr1:5094317-5097817 REVERSE LENGTH=1107
          Length = 1107

 Score =  102 bits (253), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 152/679 (22%), Positives = 275/679 (40%), Gaps = 134/679 (19%)

Query: 176 GRPHVYQCFVSPDGSLRFKGPILQNNTQTHLHKTLGDDNVLVVKFAED--KNGRNL---- 229
           G  ++Y+  V+P   + F GP +  + +   H +   +N L V F ++  +  R++    
Sbjct: 363 GLVYMYRVQVTP-ARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMDLSP 421

Query: 230 KTNAQDAVALYGKFG---KEGIRVGLRLYRFFVFKDSGKEEKKKDPTASSVKCYFVRMES 286
           +++ Q    LY +     ++GI +G + + F  F  S   E                   
Sbjct: 422 RSSTQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSA---------------- 465

Query: 287 HCSADERTFYILSKKTMFEARSLFMHAHLLPSIDKFMARFSLLLSKTLKLDIDLTTVNVQ 346
                   F  + + T    R+       + ++ K+ AR     S + +  +++ +  ++
Sbjct: 466 ------WMFAPIDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSS-RETLNVRSDEIE 518

Query: 347 KIQDIPCLDENDNAVYHNEKPCILTDGTGFISEDLAILCPNDVLKGMNLKNKSKEISNLV 406
            I D+  +      V+        +DG G IS + A                 ++++   
Sbjct: 519 VIPDVEIISLGTRYVF--------SDGIGKISAEFA-----------------RKVARKC 553

Query: 407 ELVDMSKAVGEAALSPHQPPLLIQCRIFHMGRAIKGTLLVNRKLPSRTIHVRPSMIKVET 466
            L + S             P   Q R        KG + V+    S+ + +R SM K E+
Sbjct: 554 GLTEFS-------------PSAFQIRY----GGYKGVVAVDPN-SSKKLSLRKSMSKFES 595

Query: 467 DMSLQNIQSINSMEVVNTSQKPNRTYLSKYLIALLSYGGVPNQFFMEVLQSNLEDADHVY 526
           +         N+   V    K    Y+++ LI LLS  GV +  F +  +  ++  D + 
Sbjct: 596 E---------NTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAIL 646

Query: 527 SNKRTALRAT--VNHGEMDDYIAAGMILCGI-PLDEPFLQNHLSKLAIEEKKRLRG-GRL 582
           ++   A  A   +  GE  + + A +ILCG  P  EPFL   L      +   LR   R+
Sbjct: 647 THPLEAHEALGLMAPGENTNILKA-LILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRI 705

Query: 583 YLPDCFYLMGTVDPTGRLKANEVCIIHENGQ-------ITGDVLVYRNPGLHFGDIHIMH 635
           ++     +MG +D T  L+  +V + + +         ITG V+V +NP LH GD+ ++ 
Sbjct: 706 FISGGRSMMGCLDETRTLEYGQVVVQYSDPMRPGRRFIITGPVVVAKNPCLHPGDVRVLQ 765

Query: 636 ARYVEELESYVGHSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVSKHPQLLQHFRKSDPW 695
           A  V  L     H    + FP  G R   +E +G D DGD+Y+V    +L+   R S+P 
Sbjct: 766 AVNVPAL----NHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPP-RTSEPM 820

Query: 696 IESPAPCNSIRLDSTIKKPSGLSAXXXXXXXXXXXXXTRFQPSNTIGAAADSWMALMDR- 754
             +P P   +  D TI++     A               +  ++++G  A++  A  D+ 
Sbjct: 821 DYTPEPTQILDHDVTIEEVEEYFA--------------NYIVNDSLGIIANAHTAFADKE 866

Query: 755 -LLTLRDDCTKENEKQHVKENILKLIDIYYQAIDAPKQGGGKLRIPNDLTVEMYPHYMER 813
            L    D C             ++L   +  A+D PK G   + IP  L V+ YP +ME+
Sbjct: 867 PLKAFSDPC-------------IELAKKFSTAVDFPKTGVAAV-IPQHLYVKEYPDFMEK 912

Query: 814 --GRSFTSTSILGLIYDEV 830
               ++ S +++G ++ EV
Sbjct: 913 PDKPTYESKNVIGKLFREV 931


>AT3G49500.1 | Symbols: RDR6, SGS2, SDE1 | RNA-dependent RNA
            polymerase 6 | chr3:18349193-18353205 REVERSE LENGTH=1196
          Length = 1196

 Score = 87.8 bits (216), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 127/510 (24%), Positives = 209/510 (40%), Gaps = 98/510 (19%)

Query: 492  YLSKYLIALLSYGGVPNQFFMEVLQSNLEDADHVYSNKRTALRATVNHGEMDDYIAAGMI 551
            +L++ +I LLS  GVP++ F ++ +S L   + +  +   A              AA M+
Sbjct: 665  FLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVLTASCAEQGNTAAIML 724

Query: 552  LCGI-PLDEPFLQNHLSKLAIEEKKRLR-GGRLYLPDCFYLMGTVDPTGRLKANEVCIIH 609
              G  P  EP L+  LS + I +   LR   R+++    +LMG +D  G L+  + C I 
Sbjct: 725  SAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAGILEHGQ-CFIQ 783

Query: 610  -----------ENGQ-----------ITGDVLVYRNPGLHFGDIHIMHARYVEELESYVG 647
                       ++G            + G V + +NP LH GD+ I+ A  V +L     
Sbjct: 784  VSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRILEAVDVPQLH---- 839

Query: 648  HSKYAIFFPCVGPRSIADEIAGGDFDGDLYWVSKHPQLLQHFRKSDPWIESPAPCNSIRL 707
            H    + FP  G R   +E +G D DGDLY+V+   +L+   RKS P         ++  
Sbjct: 840  HMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYP---------AMHY 890

Query: 708  DSTIKKPSGLSAXXXXXXXXXXXXXTRFQPSNTIGAAADSWMALMDRLLTLRDDCTKENE 767
            D+  +K  G +               R   +  +G   ++ +   DR           +E
Sbjct: 891  DAAEEKSLGRAV----NHQDIIDFFARNLANEQLGTICNAHVVHADR-----------SE 935

Query: 768  KQHVKENILKLIDIYYQAIDAPKQGGGKLRIPNDLTVEMYPHYM--ERGRSFTSTSILGL 825
               + E  L L ++   A+D PK  G  + +P  L  ++YP +M  E  +++ S  ILG 
Sbjct: 936  YGAMDEECLLLAELAATAVDFPKT-GKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGR 994

Query: 826  IYDEVGRWQTND------------DMPGKDIRKLPCFDAEIP----MDCM---------- 859
            +Y  V      D             +P   + ++P F+  IP      C+          
Sbjct: 995  LYRRVKEVYDEDAEASSEESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLG 1054

Query: 860  ----QKWEELYR-------NYREDMTNALKDPLK--ANDEADEVIKMYKQKLYGAATMED 906
                QK EE+          Y       LK+ LK   N    E  K++++ +     + +
Sbjct: 1055 QYKVQKEEEIVTGHIWSMPKYTSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSE 1114

Query: 907  SPKNISDIY-KEALAVYHVTYNFAILCKSV 935
              KNI  +Y K+A A YHVTY+   + KS+
Sbjct: 1115 EEKNI--LYEKKASAWYHVTYHPEWVKKSL 1142


>AT4G11130.1 | Symbols: RDR2, SMD1 | RNA-dependent RNA polymerase 2
           | chr4:6780522-6784390 FORWARD LENGTH=1133
          Length = 1133

 Score = 77.0 bits (188), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 100/421 (23%), Positives = 175/421 (41%), Gaps = 76/421 (18%)

Query: 441 KGTLLVNRKLPSRTIHVRPSMIKVETDMSLQNIQSINSMEVVNTSQKPNRTYLSKYLIAL 500
           KG + V+R    R + +R SM+K +++  + N+          T   P   +L++ +I L
Sbjct: 589 KGVIAVDRS-SFRKLSLRDSMLKFDSNNRMLNVTRW-------TESMP--CFLNREIICL 638

Query: 501 LSYGGVPNQFFMEVLQSNLEDADHVYSNKRTALRATVN-HGEMDDYIAAGMILCG-IPLD 558
           LS  G+ +  F  +   +L    ++  ++  AL       GE    +   M+L G  P  
Sbjct: 639 LSTLGIEDAMFEAMQAVHLSMLGNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSS 698

Query: 559 EPFLQ-----NHLSKLAIEEKKRLRGGRLYLPDCFYLMGTVDPTGRLKANEVC------- 606
           EP+L      +H S+L+ E K R R   + +P    L+G +D  G L+  +V        
Sbjct: 699 EPYLSMMLRVHHESQLS-ELKSRCR---ILVPKGRILIGCMDEMGILEYGQVYVRVTLTK 754

Query: 607 -------------IIHENGQITGDVLVYRNPGLHFGDIHIMHARYVEELESYVGHSKY-- 651
                        I  E   + G V+V +NP LH GDI ++ A Y    E +     Y  
Sbjct: 755 AELKSRDQSYFRKIDEETSVVIGKVVVTKNPCLHPGDIRVLDAIY----EVHFEEKGYLD 810

Query: 652 AIFFPCVGPRSIADEIAGGDFDGDLYWVSKHPQLLQHFRKSDPWIESPAPCNSIRLDSTI 711
            I FP  G R   +E +GGD DGD ++VS   +++    + DP            +D   
Sbjct: 811 CIIFPQKGERPHPNECSGGDLDGDQFFVSWDEKIIPS--EMDP-----------PMDYAG 857

Query: 712 KKPSGLSAXXXXXXXXXXXXXTRFQPSNTIGAAADSWMALMDRLLTLRDDCTKENEKQHV 771
            +P  +                 +  S+T+G  + + +   DR           + ++  
Sbjct: 858 SRPRLMD--HDVTLEEIHKFFVDYMISDTLGVISTAHLVHADR-----------DPEKAR 904

Query: 772 KENILKLIDIYYQAIDAPKQGGGKLRIPNDLTVEMYPHYMERGR--SFTSTSILGLIYDE 829
            +  L+L +++ +A+D  K G     +P  L    +P ++ER    ++ S S+ G +Y  
Sbjct: 905 SQKCLELANLHSRAVDFAKTGAPA-EMPYALKPREFPDFLERFEKPTYISESVFGKLYRA 963

Query: 830 V 830
           V
Sbjct: 964 V 964