Miyakogusa Predicted Gene

Lj2g3v0824690.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0824690.1 Non Chatacterized Hit- tr|G7L856|G7L856_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,45.12,5e-18,seg,NULL,CUFF.35515.1
         (154 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G28840.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    59   9e-10

>AT4G28840.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           BEST Arabidopsis thaliana protein match is: unknown
           protein (TAIR:AT2G20080.1); Has 71 Blast hits to 69
           proteins in 15 species: Archae - 0; Bacteria - 0;
           Metazoa - 2; Fungi - 0; Plants - 67; Viruses - 0; Other
           Eukaryotes - 2 (source: NCBI BLink). |
           chr4:14240867-14242513 FORWARD LENGTH=193
          Length = 193

 Score = 59.3 bits (142), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 65/164 (39%), Gaps = 15/164 (9%)

Query: 1   MGSSYFGEPNMGNNERVXXXXXXXXXXXXXXXXXXXX------RGLGVAQLEKIRLHGQM 54
           MGSS+FG P MG +                             RGLGVAQLEKIRLHG+ 
Sbjct: 1   MGSSFFGRPKMGGSSSSSPTSSSSSPAKRGKNKNGSDKPKQPQRGLGVAQLEKIRLHGEY 60

Query: 55  AYGFHPLHQGSFPSNLNNEDPRVQTPXXXXXXXXXXXXXXXXXXXXXXHGFQPNLVIGL- 113
                  +    PS    ED R+Q                        +GF PN+++   
Sbjct: 61  NCNSFNTYPSYHPSTY-QEDVRIQGGYPSIPSSSPSFSYASSSPPPAPYGFHPNMMMNAN 119

Query: 114 -PEYERSSMGYGVSQPTSTTRWE------QANTIAQPNTTRPLL 150
             +YER+++ YG SQP     W       ++    +PNTTR  L
Sbjct: 120 NDQYERTTIRYGDSQPHRAPSWNPSYGILESQHFVEPNTTRHFL 163