Miyakogusa Predicted Gene

Lj2g3v0808940.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0808940.1 Non Chatacterized Hit- tr|J3LBP8|J3LBP8_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB02G2,38.18,3e-18,seg,NULL; Ran BP2/NZF zinc finger-like,NULL;
ZF_RANBP2_1,Zinc finger, RanBP2-type; ZF_RANBP2_2,Zinc ,CUFF.35477.1
         (390 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G28990.1 | Symbols:  | RNA-binding protein-related | chr4:142...   114   2e-25
AT4G28990.2 | Symbols:  | RNA-binding protein-related | chr4:142...    92   4e-19

>AT4G28990.1 | Symbols:  | RNA-binding protein-related |
           chr4:14291205-14293018 FORWARD LENGTH=347
          Length = 347

 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 146/401 (36%), Positives = 164/401 (40%), Gaps = 109/401 (27%)

Query: 4   SRDKDSAPSHHHQPPLLSSLVVRPSHTET-----TAAADYESGELHXXXXXXXXXXXXXX 58
           S +K+    HH  PP +SSLVVRPS +        AA DYE GE+               
Sbjct: 3   STEKEQTTQHH--PPHISSLVVRPSGSNDREDGRNAAGDYEPGEVSRDRPSFNRSDRYKG 60

Query: 59  XXXGYRIRAGSSSPVHRRDADHRLSSDYNHLSX----XXXXXXXXXXXXXXXXXXXXARG 114
              G+R RA SSSP  R   DH+  SD NH                           ARG
Sbjct: 61  DNGGHRTRASSSSPGRRGYEDHKHGSDLNHSGVPPRGRELSSRREAPGRHRDYSPPLARG 120

Query: 115 RVGGRPIGRAFDGPSFGPGHAR-GEGRNN-PNVRPREGDWICPDGLCGNLNFARRDHCNS 172
             G RP  R  DGP   P H R G  RNN   V+PREGDW C D LC NLNFARR+ C  
Sbjct: 121 GAGARPYRRGLDGPE--PPHGRDGMSRNNISKVQPREGDWYCLDPLCRNLNFARRESCYK 178

Query: 173 CNRARPTPAGSPRRAYPSPPPLHAPQRRFPGPPLDHSPERSMNGYNRSPLRGLGRDGPRD 232
           C R R  PA S             P  R   PP++HSP R  NGY RSP RG     PRD
Sbjct: 179 CKRHRYAPANS------------PPLPRLLPPPMNHSPRRDFNGY-RSPPRGW----PRD 221

Query: 233 YGSAAALPPLRHEGRFPDPSL---HRDRLDYIEDPYRGRSKFDRPPPLDWDSRDRVRDVL 289
           Y      PP RH+     P+     RDR  Y +  Y        PP     SR    D  
Sbjct: 222 Y------PPPRHD----HPTWRDRERDRPHYSDHEY--------PP-----SRRIASDWA 258

Query: 290 ANERKGFERRPLSPPAARFDRR-PLSPPAARFDRRXXXXXXXXXXXXXHHRGGRWARDVR 348
             E       PL  P   +DRR PLSPP                      RGGRW R +R
Sbjct: 259 HTE-------PL--PKPHYDRRPPLSPP----------------------RGGRWGRVLR 287

Query: 349 ERSRS-----------------PIRGGPP--AKDYRRDMFV 370
           ERSRS                  +RGG P   +DYRRD   
Sbjct: 288 ERSRSPPLRDVPPPPLRDGPPPSLRGGGPPLHRDYRRDSHF 328


>AT4G28990.2 | Symbols:  | RNA-binding protein-related |
           chr4:14291205-14293018 FORWARD LENGTH=395
          Length = 395

 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 125/335 (37%), Positives = 138/335 (41%), Gaps = 102/335 (30%)

Query: 62  GYRIRAGSSSPVHRRDADHRLSSDYNHLSX----XXXXXXXXXXXXXXXXXXXXARGRVG 117
           G+R RA SSSP  R   DH+  SD NH                           ARG  G
Sbjct: 112 GHRTRASSSSPGRRGYEDHKHGSDLNHSGVPPRGRELSSRREAPGRHRDYSPPLARGGAG 171

Query: 118 GRPIGRAFDGPSFGPGHAR-GEGRNN-PNVRPREGDWICPDGLCGNLNFARRDHCNSCNR 175
            RP  R  DGP   P H R G  RNN   V+PREGDW C D LC NLNFARR+ C  C R
Sbjct: 172 ARPYRRGLDGPE--PPHGRDGMSRNNISKVQPREGDWYCLDPLCRNLNFARRESCYKCKR 229

Query: 176 ARPTPAGSPRRAYPSPPPLHAPQRRFPGPPLDHSPERSMNGYNRSPLRGLGRDGPRDYGS 235
            R  PA S             P  R   PP++HSP R  NGY RSP RG     PRDY  
Sbjct: 230 HRYAPANS------------PPLPRLLPPPMNHSPRRDFNGY-RSPPRGW----PRDY-- 270

Query: 236 AAALPPLRHEGRFPDPSL---HRDRLDYIEDPYRGRSKFDRPPPLDWDSRDRVRDVLANE 292
               PP RH+     P+     RDR  Y +  Y        PP     SR    D    E
Sbjct: 271 ----PPPRHD----HPTWRDRERDRPHYSDHEY--------PP-----SRRIASDWAHTE 309

Query: 293 RKGFERRPLSPPAARFDRR-PLSPPAARFDRRXXXXXXXXXXXXXHHRGGRWARDVRERS 351
                  PL  P   +DRR PLSPP                      RGGRW R +RERS
Sbjct: 310 -------PL--PKPHYDRRPPLSPP----------------------RGGRWGRVLRERS 338

Query: 352 RS-----------------PIRGG--PPAKDYRRD 367
           RS                  +RGG  P  +DYRRD
Sbjct: 339 RSPPLRDVPPPPLRDGPPPSLRGGGPPLHRDYRRD 373