Miyakogusa Predicted Gene

Lj2g3v0781630.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0781630.1 Non Chatacterized Hit- tr|J3MPU6|J3MPU6_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB08G1,51.65,3e-18,seg,NULL,CUFF.35449.1
         (466 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G19540.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   595   e-170

>AT5G19540.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages; Has 1807 Blast hits to 1807 proteins in
           277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
           Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
           - 339 (source: NCBI BLink). | chr5:6595748-6597724
           FORWARD LENGTH=462
          Length = 462

 Score =  595 bits (1534), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 280/393 (71%), Positives = 334/393 (84%), Gaps = 2/393 (0%)

Query: 76  FLQNNSIADFMRFKRGVR-GGGSGDLQTALVSYRKKFPWSILQPFLQVDLVSTIHIADEE 134
           FL++NSIAD+MRFKR    G G+ +LQTA+VSY+K+FPW +L PFLQVDLVSTIHIAD+E
Sbjct: 70  FLESNSIADYMRFKRRPDPGNGTSELQTAIVSYKKRFPWILLNPFLQVDLVSTIHIADKE 129

Query: 135 YFLALQKELESYDCVLYEMVASRESLENKRNFTVTTRLKGSRSKGFNILGCIQRQMARIL 194
           YF  LQKELE YD +LYEMVAS+E+LEN+RN   + RLK SRS+GF+ILG IQRQMAR+L
Sbjct: 130 YFTTLQKELEPYDSILYEMVASKETLENRRNPIASKRLKSSRSRGFSILGFIQRQMARVL 189

Query: 195 TLDFQLDCLNYQSPNWYHADLDYETFKLLQLEKGESLFSFAKEMTLKSTKAILQSASIPE 254
           TLDFQLDCL+Y + NWYHADLD+ETF+LLQ EKGES FSFA++MT++STKA++Q A + E
Sbjct: 190 TLDFQLDCLDYDTENWYHADLDFETFQLLQKEKGESFFSFARDMTIRSTKAMIQPALVTE 249

Query: 255 DLDPWRSKLLWASRVLPMPLVGLLIIGGVCADVGTQASEYPEIEALSRLDFSAAMKVFLA 314
             D WRSKLLW SRV PMPLVGL +IG  CAD G Q S+YPE+EALSRLDF AAMKVFLA
Sbjct: 250 GRDTWRSKLLWVSRVFPMPLVGLFLIGAFCADFGDQTSDYPELEALSRLDFGAAMKVFLA 309

Query: 315 KRLTSEFTQITADVEEKSVIIGERNRVALETLRRAMDEGHNRIAILYGGGHMPDLGRRLR 374
           KRLTSE T  T+D+EEKSVIIGERNR A E LRRA+++GH RI ILYGGGHMPDLGRRLR
Sbjct: 310 KRLTSELTLETSDIEEKSVIIGERNRAATEALRRAIEQGHKRIGILYGGGHMPDLGRRLR 369

Query: 375 EEFDLVPSSVRWVTAWSIRK-RDLNTNSFPFLKTMAKASGWPLNRYQTLALLIFSSVLAL 433
           EEFDLVPS VRWVTAWSIR   DL T+S+P L+ MA+A  WPLNRYQTLALLIFSSVLAL
Sbjct: 370 EEFDLVPSEVRWVTAWSIRNPTDLETSSYPILRKMAEALRWPLNRYQTLALLIFSSVLAL 429

Query: 434 DLWFWELFFGTAVNWVSEVGSEFLQYVDNSQMI 466
           DL FWELFFG+ ++W +++G+E  Q++DN++++
Sbjct: 430 DLCFWELFFGSTIDWATQIGAELYQFIDNTKIV 462