Miyakogusa Predicted Gene

Lj2g3v0777310.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0777310.1 Non Chatacterized Hit- tr|I1KIR7|I1KIR7_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.7482 PE=,68.75,1e-17,
,CUFF.35419.1
         (79 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G67910.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    47   3e-06
AT1G67910.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    47   3e-06

>AT1G67910.2 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; INVOLVED IN:
          biological_process unknown; LOCATED IN: chloroplast;
          EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12
          growth stages; BEST Arabidopsis thaliana protein match
          is: unknown protein (TAIR:AT1G24577.1). |
          chr1:25471534-25471809 REVERSE LENGTH=91
          Length = 91

 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 20/28 (71%), Positives = 22/28 (78%)

Query: 20 SGTASMPKGHCLCSPTTHEGSFRCRLHR 47
          S   SM K +CLCSPTTH GSFRCR+HR
Sbjct: 34 SRQTSMTKTNCLCSPTTHPGSFRCRIHR 61


>AT1G67910.1 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; INVOLVED IN:
          biological_process unknown; LOCATED IN: chloroplast;
          EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12
          growth stages; BEST Arabidopsis thaliana protein match
          is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast
          hits to 167 proteins in 19 species: Archae - 0;
          Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167;
          Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
          | chr1:25471534-25471809 REVERSE LENGTH=91
          Length = 91

 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 20/28 (71%), Positives = 22/28 (78%)

Query: 20 SGTASMPKGHCLCSPTTHEGSFRCRLHR 47
          S   SM K +CLCSPTTH GSFRCR+HR
Sbjct: 34 SRQTSMTKTNCLCSPTTHPGSFRCRIHR 61