Miyakogusa Predicted Gene
- Lj2g3v0777050.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v0777050.1 tr|G7KNH7|G7KNH7_MEDTR DNA mismatch repair
protein Msh6-2 OS=Medicago truncatula GN=MTR_6g086270 PE=,85.87,0,MUTS
HOMOLOG 6, MSH6,DNA mismatch repair protein MutS-homologue MSH6; DNA
MISMATCH REPAIR MUTS RELAT,CUFF.35408.1
(663 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24495.1 | Symbols: MSH7, MSH6-2, ATMSH7 | MUTS homolog 7 | c... 842 0.0
AT4G02070.2 | Symbols: MSH6 | MUTS homolog 6 | chr4:906079-91293... 251 9e-67
AT4G02070.1 | Symbols: MSH6, MSH6-1, ATMSH6 | MUTS homolog 6 | c... 251 9e-67
AT3G18524.1 | Symbols: MSH2, ATMSH2 | MUTS homolog 2 | chr3:6368... 187 2e-47
AT4G25540.1 | Symbols: MSH3, ATMSH3 | homolog of DNA mismatch re... 160 3e-39
AT4G17380.1 | Symbols: MSH4, ATMSH4 | MUTS-like protein 4 | chr4... 140 2e-33
AT3G20475.1 | Symbols: ATMSH5, MSH5 | MUTS-homologue 5 | chr3:71... 109 7e-24
AT3G24320.1 | Symbols: MSH1, CHM1, ATMSH1, CHM | MUTL protein ho... 99 7e-21
AT5G54090.1 | Symbols: | DNA mismatch repair protein MutS, type... 82 1e-15
AT1G65070.2 | Symbols: | DNA mismatch repair protein MutS, type... 80 3e-15
AT1G65070.1 | Symbols: | DNA mismatch repair protein MutS, type... 80 4e-15
>AT3G24495.1 | Symbols: MSH7, MSH6-2, ATMSH7 | MUTS homolog 7 |
chr3:8912418-8918086 REVERSE LENGTH=1109
Length = 1109
Score = 842 bits (2176), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/670 (62%), Positives = 507/670 (75%), Gaps = 13/670 (1%)
Query: 1 MQVSPKEVIYESRGLSKEAQKALRKFSGNGSTTL-LTPV-QSINDLVNTEINDLILSKGY 58
MQVSPKEV+Y+S+GLS+EAQKALRK++ GST + L PV Q + D + ++I S GY
Sbjct: 438 MQVSPKEVLYDSKGLSREAQKALRKYTLTGSTAVQLAPVPQVMGDTDAAGVRNIIESNGY 497
Query: 59 FKGSSDPLDHVMSKVIHREITLSALGGLIGHLDRLMLDDILQNGDLYPYQVYKACLKMDG 118
FKGSS+ + + + ++ LSALG LI HL RL L+D+L++GD++PYQVY+ CL++DG
Sbjct: 498 FKGSSESWNCAVDGLNECDVALSALGELINHLSRLKLEDVLKHGDIFPYQVYRGCLRIDG 557
Query: 119 PTLINLEIFSNSDDGGKSGTLYKYLDNCVTSPGKRLLRNWICCPLKDGEGINNRLDVVDN 178
T++NLEIF+NS DGG SGTLYKYLDNCV+ GKRLLRNWIC PLKD E IN RLDVV+
Sbjct: 558 QTMVNLEIFNNSCDGGPSGTLYKYLDNCVSPTGKRLLRNWICHPLKDVESINKRLDVVEE 617
Query: 179 LIACPEIVSHIAQHLRKLPDLELLLGRIKSTXXXXXXXXXXXXXXXXXXXRVKVFGSLVK 238
A E + Q+L KLPDLE LLGRIKS+ RVK FG +VK
Sbjct: 618 FTANSESMQITGQYLHKLPDLERLLGRIKSSVRSSASVLPALLGKKVLKQRVKAFGQIVK 677
Query: 239 GLRTAXXXXXXXQKEQPLISSLNKVFKLPILTGINGLDKFLTQFEAAVDSDFPNYLNHNV 298
G R+ QKE ++S L K+ KLPIL G +GL+ FL+QFEAA+DSDFPNY N +V
Sbjct: 678 GFRSGIDLLLALQKESNMMSLLYKLCKLPILVGKSGLELFLSQFEAAIDSDFPNYQNQDV 737
Query: 299 TDSDAXXXXXXXXXXXXKAAQWFEVVNAINCIDVLRSFAMASSFSCGTMSRPVIVPRSEC 358
TD +A +A QW EV++ I+C+DVLRSFA+A+S S G+M+RPVI P SE
Sbjct: 738 TDENAETLTILIELFIERATQWSEVIHTISCLDVLRSFAIAASLSAGSMARPVIFPESEA 797
Query: 359 TSKD--SGGPVLKMKGLWHPFALGESGCLPVPNDIILGENEDRR-----HPCTLLLTGPN 411
T ++ + GP+LK++GLWHPFA+ G LPVPNDI+LGE RR HP +LLLTGPN
Sbjct: 798 TDQNQKTKGPILKIQGLWHPFAVAADGQLPVPNDILLGEA--RRSSGSIHPRSLLLTGPN 855
Query: 412 MGGKSTLLRATCLAVIMAQLGCYVPCENCVISVVDIIFTRLGATDRIMAGESTFFIECTE 471
MGGKSTLLRATCLAVI AQLGCYVPCE+C IS+VD IFTRLGA+DRIM GESTF +ECTE
Sbjct: 856 MGGKSTLLRATCLAVIFAQLGCYVPCESCEISLVDTIFTRLGASDRIMTGESTFLVECTE 915
Query: 472 TASVLQNATQDSLVILDELGRGTSTFDGYAIAYAVFRHLIEKVNCRLLFATHYHPLTKEF 531
TASVLQNATQDSLVILDELGRGTSTFDGYAIAY+VFRHL+EKV CR+LFATHYHPLTKEF
Sbjct: 916 TASVLQNATQDSLVILDELGRGTSTFDGYAIAYSVFRHLVEKVQCRMLFATHYHPLTKEF 975
Query: 532 ASHPRVTMQHMACAFKSKSDTLSKR-DQELVFLYRLASGACPESYGLQVALMAGIPEKTV 590
ASHPRVT +HMACAFKS+SD + DQ+LVFLYRL GACPESYGLQVALMAGIP + V
Sbjct: 976 ASHPRVTSKHMACAFKSRSDYQPRGCDQDLVFLYRLTEGACPESYGLQVALMAGIPNQVV 1035
Query: 591 NIASKASQQMKKSIGRTFRSSELRSEFSTLHEEWLKTLMSISRM-EDGKSFDEDVLDTLI 649
AS A+Q MK+SIG F+SSELRSEFS+LHE+WLK+L+ ISR+ + ED DTL
Sbjct: 1036 ETASGAAQAMKRSIGENFKSSELRSEFSSLHEDWLKSLVGISRVAHNNAPIGEDDYDTLF 1095
Query: 650 CLWYELKTSF 659
CLW+E+K+S+
Sbjct: 1096 CLWHEIKSSY 1105
>AT4G02070.2 | Symbols: MSH6 | MUTS homolog 6 | chr4:906079-912930
FORWARD LENGTH=1321
Length = 1321
Score = 251 bits (642), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 139/297 (46%), Positives = 185/297 (62%), Gaps = 16/297 (5%)
Query: 319 QWFEVVNAINCIDVLRSFAMASSFSCGTMSRPVIVPRSECTSKDSGGPVLKMKGLWHPFA 378
+W ++V+A +DVL S A AS G RPVI S G P L GL HP
Sbjct: 996 KWRQLVSATAELDVLISLAFASDSYEGVRCRPVI-----SGSTSDGVPHLSATGLGHPVL 1050
Query: 379 LGES---GCLPVPNDIILGENEDRRHPCTLLLTGPNMGGKSTLLRATCLAVIMAQLGCYV 435
G+S G VPN++ +G E +LLTGPNMGGKSTLLR CLAVI+AQ+G V
Sbjct: 1051 RGDSLGRGSF-VPNNVKIGGAE---KASFILLTGPNMGGKSTLLRQVCLAVILAQIGADV 1106
Query: 436 PCENCVISVVDIIFTRLGATDRIMAGESTFFIECTETASVLQNATQDSLVILDELGRGTS 495
P E +S VD I R+GA D IMAG+STF E +ETA +L +AT++SLV+LDELGRGT+
Sbjct: 1107 PAETFEVSPVDKICVRMGAKDHIMAGQSTFLTELSETAVMLTSATRNSLVVLDELGRGTA 1166
Query: 496 TFDGYAIAYAVFRHLIEKVNCRLLFATHYHPLTKEFASHPRVTMQHMACAFKSKSDTLSK 555
T DG AIA +V H IEKV CR F+THYH L+ ++ ++P+V++ HMAC +
Sbjct: 1167 TSDGQAIAESVLEHFIEKVQCRGFFSTHYHRLSVDYQTNPKVSLCHMACQIGEGIGGV-- 1224
Query: 556 RDQELVFLYRLASGACPESYGLQVALMAGIPEKTVNIASKASQQMKKSIGRTFRSSE 612
+E+ FLYRL GACP+SYG+ VA +AG+P+ + A SQ+ + G+ R ++
Sbjct: 1225 --EEVTFLYRLTPGACPKSYGVNVARLAGLPDYVLQRAVIKSQEFEALYGKNHRKTD 1279
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 79/145 (54%), Gaps = 17/145 (11%)
Query: 78 ITLSALGGLIGHLDRLMLDDIL---QNGDLYPYQVY-----KACLKMDGPTLINLEIFSN 129
+ LSALGG I +L + LD+ L + PY + K + +D L NLEIF N
Sbjct: 649 LALSALGGAIYYLRQAFLDESLLRFAKFESLPYCDFSNVNEKQHMVLDAAALENLEIFEN 708
Query: 130 SDDGGKSGTLYKYLDNCVTSPGKRLLRNWICCPLKDGEGINNRLDVV-----DNLIACPE 184
S +GG SGTLY L+ C+T+ GKRLL+ W+ PL + E I R D V +NL E
Sbjct: 709 SRNGGYSGTLYAQLNQCITASGKRLLKTWLARPLYNTELIKERQDAVAILRGENLPYSLE 768
Query: 185 IVSHIAQHLRKLPDLELLLGRIKST 209
+ L +LPD+E L+ R+ S+
Sbjct: 769 ----FRKSLSRLPDMERLIARMFSS 789
>AT4G02070.1 | Symbols: MSH6, MSH6-1, ATMSH6 | MUTS homolog 6 |
chr4:906079-912930 FORWARD LENGTH=1324
Length = 1324
Score = 251 bits (642), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 139/297 (46%), Positives = 185/297 (62%), Gaps = 16/297 (5%)
Query: 319 QWFEVVNAINCIDVLRSFAMASSFSCGTMSRPVIVPRSECTSKDSGGPVLKMKGLWHPFA 378
+W ++V+A +DVL S A AS G RPVI S G P L GL HP
Sbjct: 999 KWRQLVSATAELDVLISLAFASDSYEGVRCRPVI-----SGSTSDGVPHLSATGLGHPVL 1053
Query: 379 LGES---GCLPVPNDIILGENEDRRHPCTLLLTGPNMGGKSTLLRATCLAVIMAQLGCYV 435
G+S G VPN++ +G E +LLTGPNMGGKSTLLR CLAVI+AQ+G V
Sbjct: 1054 RGDSLGRGSF-VPNNVKIGGAE---KASFILLTGPNMGGKSTLLRQVCLAVILAQIGADV 1109
Query: 436 PCENCVISVVDIIFTRLGATDRIMAGESTFFIECTETASVLQNATQDSLVILDELGRGTS 495
P E +S VD I R+GA D IMAG+STF E +ETA +L +AT++SLV+LDELGRGT+
Sbjct: 1110 PAETFEVSPVDKICVRMGAKDHIMAGQSTFLTELSETAVMLTSATRNSLVVLDELGRGTA 1169
Query: 496 TFDGYAIAYAVFRHLIEKVNCRLLFATHYHPLTKEFASHPRVTMQHMACAFKSKSDTLSK 555
T DG AIA +V H IEKV CR F+THYH L+ ++ ++P+V++ HMAC +
Sbjct: 1170 TSDGQAIAESVLEHFIEKVQCRGFFSTHYHRLSVDYQTNPKVSLCHMACQIGEGIGGV-- 1227
Query: 556 RDQELVFLYRLASGACPESYGLQVALMAGIPEKTVNIASKASQQMKKSIGRTFRSSE 612
+E+ FLYRL GACP+SYG+ VA +AG+P+ + A SQ+ + G+ R ++
Sbjct: 1228 --EEVTFLYRLTPGACPKSYGVNVARLAGLPDYVLQRAVIKSQEFEALYGKNHRKTD 1282
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 79/145 (54%), Gaps = 17/145 (11%)
Query: 78 ITLSALGGLIGHLDRLMLDDIL---QNGDLYPYQVY-----KACLKMDGPTLINLEIFSN 129
+ LSALGG I +L + LD+ L + PY + K + +D L NLEIF N
Sbjct: 652 LALSALGGAIYYLRQAFLDESLLRFAKFESLPYCDFSNVNEKQHMVLDAAALENLEIFEN 711
Query: 130 SDDGGKSGTLYKYLDNCVTSPGKRLLRNWICCPLKDGEGINNRLDVV-----DNLIACPE 184
S +GG SGTLY L+ C+T+ GKRLL+ W+ PL + E I R D V +NL E
Sbjct: 712 SRNGGYSGTLYAQLNQCITASGKRLLKTWLARPLYNTELIKERQDAVAILRGENLPYSLE 771
Query: 185 IVSHIAQHLRKLPDLELLLGRIKST 209
+ L +LPD+E L+ R+ S+
Sbjct: 772 ----FRKSLSRLPDMERLIARMFSS 792
>AT3G18524.1 | Symbols: MSH2, ATMSH2 | MUTS homolog 2 |
chr3:6368151-6372409 REVERSE LENGTH=937
Length = 937
Score = 187 bits (475), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/272 (39%), Positives = 157/272 (57%), Gaps = 12/272 (4%)
Query: 330 IDVLRSFAMASSFSCGTMSRPVIVPRSECTSKDSGGPVLKMKGLWHPFALGESGCLPVPN 389
+DVL SFA ++ SC P R E TS D+G VL+ G HP + +PN
Sbjct: 599 MDVLLSFADLAA-SC-----PTPYCRPEITSSDAGDIVLE--GSRHPCVEAQDWVNFIPN 650
Query: 390 DIILGENEDRRHPCTLLLTGPNMGGKSTLLRATCLAVIMAQLGCYVPCENCVISVVDIIF 449
D L R ++TGPNMGGKST +R + V+MAQ+G +VPC+ IS+ D IF
Sbjct: 651 DCRLM----RGKSWFQIVTGPNMGGKSTFIRQVGVIVLMAQVGSFVPCDKASISIRDCIF 706
Query: 450 TRLGATDRIMAGESTFFIECTETASVLQNATQDSLVILDELGRGTSTFDGYAIAYAVFRH 509
R+GA D + G STF E ETAS+L+ A+ SL+I+DELGRGTST+DG+ +A+A+ H
Sbjct: 707 ARVGAGDCQLRGVSTFMQEMLETASILKGASDKSLIIIDELGRGTSTYDGFGLAWAICEH 766
Query: 510 LIEKVNCRLLFATHYHPLTKEFASHPRVTMQHMACAFKSKSDTLSKRDQELVFLYRLASG 569
L++ LFATH+H LT ++ V+ + A S + ++L LY++ G
Sbjct: 767 LVQVKRAPTLFATHFHELTALAQANSEVSGNTVGVANFHVSAHIDTESRKLTMLYKVEPG 826
Query: 570 ACPESYGLQVALMAGIPEKTVNIASKASQQMK 601
AC +S+G+ VA A PE V +A + + +++
Sbjct: 827 ACDQSFGIHVAEFANFPESVVALAREKAAELE 858
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 69/145 (47%), Gaps = 5/145 (3%)
Query: 56 KGYFKGSSDPLDHVMSKVIHREITLSALGGLIGHLDRLMLDDILQNGDLYPYQVYKACLK 115
K KG+ +P+ ++S ++ ALG L+ + L +D N + Y + ++
Sbjct: 240 KRLVKGNIEPVRDLVSGF---DLATPALGALLSFSELLSNEDNYGNFTIRRYDI-GGFMR 295
Query: 116 MDGPTLINLEIFSNSDDGGKSGTLYKYLD-NCVTSPGKRLLRNWICCPLKDGEGINNRLD 174
+D + L + + D K+ +L+ ++ C GKRLL W+ PL D I RLD
Sbjct: 296 LDSAAMRALNVMESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLVDLNEIKTRLD 355
Query: 175 VVDNLIACPEIVSHIAQHLRKLPDL 199
+V + + + QHL+++ D+
Sbjct: 356 IVQCFVEEAGLRQDLRQHLKRISDV 380
>AT4G25540.1 | Symbols: MSH3, ATMSH3 | homolog of DNA mismatch repair
protein MSH3 | chr4:13042700-13048115 REVERSE LENGTH=1081
Length = 1081
Score = 160 bits (404), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 93/250 (37%), Positives = 135/250 (54%), Gaps = 6/250 (2%)
Query: 387 VPNDIILGENEDRRHPCTLLLTGPNMGGKSTLLRATCLAVIMAQLGCYVPCENCVISVVD 446
VPND IL + C ++ TGPNMGGKS +R L IMAQ+G +VP + V+D
Sbjct: 799 VPNDTILHAEGEY---CQII-TGPNMGGKSCYIRQVALISIMAQVGSFVPASFAKLHVLD 854
Query: 447 IIFTRLGATDRIMAGESTFFIECTETASVLQNATQDSLVILDELGRGTSTFDGYAIAYAV 506
+FTR+GA+D I G STF E +E + +++ + SLVILDELGRGTST DG AIAYA
Sbjct: 855 GVFTRMGASDSIQHGRSTFLEELSEASHIIRTCSSRSLVILDELGRGTSTHDGVAIAYAT 914
Query: 507 FRHLIEKVNCRLLFATHYHPLTKEFASHPRVTMQHMACAFKSKSDTLSKRDQELVFLYRL 566
+HL+ + C +LF THY + + P + + D S ++ +LY+L
Sbjct: 915 LQHLLAEKRCLVLFVTHYPEIAEISNGFPGSVGTYHVSYLTLQKDKGSYDHDDVTYLYKL 974
Query: 567 ASGACPESYGLQVALMAGIPEKTVNIASKASQQMKKSIGRTFRSSELRSEFSTLHEEWLK 626
G C S+G +VA +A IP + A + +++ + R++ + HEE
Sbjct: 975 VRGLCSRSFGFKVAQLAQIPPSCIRRAISMAAKLEAEVRARERNTRMGEPEG--HEEPRG 1032
Query: 627 TLMSISRMED 636
SIS + D
Sbjct: 1033 AEESISALGD 1042
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 62/123 (50%), Gaps = 2/123 (1%)
Query: 60 KGSSDPLDHVMSKVIHREITLSALGGLIGHLDRLMLDDILQNGDLYPYQVYKACLKMDGP 119
KG S H + + H +T+ AL HL + + IL G + + +
Sbjct: 368 KGMSCLTVHTIMNMPH--LTVQALALTFCHLKQFGFERILYQGASFRSLSSNTEMTLSAN 425
Query: 120 TLINLEIFSNSDDGGKSGTLYKYLDNCVTSPGKRLLRNWICCPLKDGEGINNRLDVVDNL 179
TL LE+ N+ DG +SG+L+ +++ +T G RLLR+W+ PL D I+ RLD V +
Sbjct: 426 TLQQLEVVKNNSDGSESGSLFHNMNHTLTVYGSRLLRHWVTHPLCDRNLISARLDAVSEI 485
Query: 180 IAC 182
AC
Sbjct: 486 SAC 488
>AT4G17380.1 | Symbols: MSH4, ATMSH4 | MUTS-like protein 4 |
chr4:9708742-9714068 FORWARD LENGTH=792
Length = 792
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 119/215 (55%), Gaps = 16/215 (7%)
Query: 387 VPNDIILGENEDRRHPCTLLLTGPNMGGKSTLLRATCLAVIMAQLGCYVPCENCVISVVD 446
V N I + E + L++ GPNM GKST L+ CL VI+AQ+GCYVP I VVD
Sbjct: 536 VSNSIFMSEATN-----MLVVMGPNMSGKSTYLQQVCLVVILAQIGCYVPARFATIRVVD 590
Query: 447 IIFTRLGATDRIMAGESTFFIECTETASVLQNATQDSLVILDELGRGTSTFDGYAIAYAV 506
IFTR+G D + + STF E ETA ++QN T SL+++DELGR TS+ DG A+A++
Sbjct: 591 RIFTRMGTMDNLESNSSTFMTEMRETAFIMQNVTNRSLIVMDELGRATSSSDGLAMAWSC 650
Query: 507 FRHLIEKVNCRLLFATHYHPLTKEFASHPRVTMQHMACAFKSKSDTLSKRDQELVFLYRL 566
+L+ + +FATH L + +P V + H + RD L F ++L
Sbjct: 651 CEYLLS-LKAYTVFATHMDSLAELATIYPNVKVLHF---------YVDIRDNRLDFKFQL 700
Query: 567 ASGACP-ESYGLQVALMAGIPEKTVNIASKASQQM 600
G YGL +A +AG+P ++ A ++++
Sbjct: 701 RDGTLHVPHYGLLLAEVAGLPSTVIDTARIITKRI 735
>AT3G20475.1 | Symbols: ATMSH5, MSH5 | MUTS-homologue 5 |
chr3:7143546-7150811 FORWARD LENGTH=807
Length = 807
Score = 109 bits (272), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 109/214 (50%), Gaps = 18/214 (8%)
Query: 387 VPNDIILGENEDRRHPCTLLLTGPNMGGKSTLLRATCLAVIMAQLGCYVPCENCVISVVD 446
+PND + +N R H ++TGPN GKS ++ L V ++ +G +VP + + + D
Sbjct: 552 IPNDTEINDN-GRIH----IITGPNYSGKSIYVKQVALIVFLSHIGSFVPADAATVGLTD 606
Query: 447 IIFTRLGATDRIMAGESTFFIECTETASVLQNATQDSLVILDELGRGTSTFDGYAIAYAV 506
IF +G + + A +STF I+ + +L+ AT SL +LDE G+GT T DG +
Sbjct: 607 RIFCAMG-SKFMTAEQSTFMIDLHQVGMMLRQATSRSLCLLDEFGKGTLTEDGIGLLGGT 665
Query: 507 FRHLIEKVNC----RLLFATHYHPLTKE--FASHPRVTMQHMACAFKSKSDTLSKRDQEL 560
H C R++ TH L E ++ M+ + DT S +E+
Sbjct: 666 ISHF---ATCAEPPRVVVCTHLTELLNESCLPVSEKIKFYTMSVL---RPDTESANMEEI 719
Query: 561 VFLYRLASGACPESYGLQVALMAGIPEKTVNIAS 594
VFLYRL G SYGL AL+AG+PE+ V A+
Sbjct: 720 VFLYRLIPGQTLLSYGLHCALLAGVPEEVVKRAA 753
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 114 LKMDGPTLINLEIFSNSDDGGKSG--------TLYKYLDNCVTSPGKRLLRNWICCPLKD 165
LK+D L+IF G +++ ++ C T G+RLLR+W P+ D
Sbjct: 183 LKLDAAAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCATPMGRRLLRSWFMRPILD 242
Query: 166 GEGINNRLDVVDNLIACPEIVSHIAQHLRKLPDLELLLGRIKS 208
E ++ RL+ + I+ E+++ + + L+ + D+ LL + S
Sbjct: 243 LEVLDRRLNAISFFISSVELMASLRETLKSVKDISHLLKKFNS 285
>AT3G24320.1 | Symbols: MSH1, CHM1, ATMSH1, CHM | MUTL protein
homolog 1 | chr3:8823229-8829571 REVERSE LENGTH=1118
Length = 1118
Score = 99.4 bits (246), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 96/194 (49%), Gaps = 20/194 (10%)
Query: 405 LLLTGPNMGGKSTLLRATCLAVIMAQLGCYVPCENCVISVVDIIFTRLGATDRIMAGEST 464
LLTGPN GGKS+LLR+ C A ++ G VP E+ I D I + + D + G+S+
Sbjct: 764 FLLTGPNGGGKSSLLRSICAAALLGISGLMVPAESACIPHFDSIMLHMKSYDSPVDGKSS 823
Query: 465 FFIECTETASVLQNATQDSLVILDELGRGTSTFDGYAIAYAVFRHLIEKVNCRLLFATHY 524
F +E +E S++ AT SLV++DE+ RGT T G IA +V L + C + +TH
Sbjct: 824 FQVEMSEIRSIVSQATSRSLVLIDEICRGTETAKGTCIAGSVVESL-DTSGCLGIVSTHL 882
Query: 525 H-----PLTKEFASHPRVTMQHMACAFKSKSDTLSKRDQELVFLYRLASGACPESYGLQV 579
H PLT + ++ + +++ K ++L G C ES +
Sbjct: 883 HGIFSLPLTAKNITYKAMGAENVEGQTKPT--------------WKLTDGVCRESLAFET 928
Query: 580 ALMAGIPEKTVNIA 593
A G+PE + A
Sbjct: 929 AKREGVPESVIQRA 942
>AT5G54090.1 | Symbols: | DNA mismatch repair protein MutS, type 2
| chr5:21948283-21952550 REVERSE LENGTH=796
Length = 796
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 98/206 (47%), Gaps = 17/206 (8%)
Query: 382 SGCLPVPNDIILGENEDRRHPCTLLLTGPNMGGKSTLLRATCLAVIMAQLGCYV-PCENC 440
SG P+P D + + L++TGPN GGK+ L++ LA +MA+ G YV E+
Sbjct: 419 SGAPPIPADFQISKGTR-----VLVITGPNTGGKTICLKSVGLAAMMAKSGLYVLATESA 473
Query: 441 VISVVDIIFTRLGATDRIMAGESTFFIECTETASVLQNATQDSLVILDELGRGTSTFDGY 500
I D I+ +G ++ STF + + +L ++T SLV+LDE+G GT+ +G
Sbjct: 474 RIPWFDNIYADIGDEQSLLQSLSTFSGHLKQISEILSHSTSRSLVLLDEVGAGTNPLEGA 533
Query: 501 AIAYAVFRHLIEKVNCRLLFATHYHPLTKEFASHPRVTMQHMACAFKSKSDTLSKRDQEL 560
A+ A+ E + + TH+ L T+++ AF++ + D L
Sbjct: 534 ALGMAILESFAESGSLLTMATTHHGELK---------TLKYSNSAFENA--CMEFDDLNL 582
Query: 561 VFLYRLASGACPESYGLQVALMAGIP 586
Y++ G S + +A G+P
Sbjct: 583 KPTYKILWGVPGRSNAINIADRLGLP 608
>AT1G65070.2 | Symbols: | DNA mismatch repair protein MutS, type 2
| chr1:24173047-24176244 REVERSE LENGTH=876
Length = 876
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 145/302 (48%), Gaps = 40/302 (13%)
Query: 365 GPVLKMKGLWHPFALGE-------SGCLPVPNDIILGENEDRRHPCTLLLTGPNMGGKST 417
G + + HP LG PVP DI + + ++++GPN GGK+
Sbjct: 356 GLAVDIDSAQHPLLLGSVLGSPNGGDIFPVPVDIKVESSAK-----VVVISGPNTGGKTA 410
Query: 418 LLRATCLAVIMAQLGCYVPCENC-VISVVDIIFTRLGATDRIMAGESTFFIECTETASVL 476
LL+ L +M++ G Y+P +NC + D+I +G + STF + +L
Sbjct: 411 LLKTLGLLSLMSKSGMYLPAKNCPRLPWFDLILADIGDPQSLEQSLSTFSGHISRIRQIL 470
Query: 477 QNATQDSLVILDELGRGTSTFDGYAIAYAVFRHLIEKVNCRLLFATHYHPLTKEFASHPR 536
A+++SLV+LDE+ GT +G A+A ++ +++ +VN ++ +THY L++ + PR
Sbjct: 471 DIASENSLVLLDEICSGTDPSEGVALATSILQYIKNRVNVAVV-STHYGDLSRLKDNEPR 529
Query: 537 VTMQHMACAFKSKSDTLSKRDQELVFLYRLASGACPESYGLQVALMAGIPEKTVNIASKA 596
Q+ A F ++ L +R+ G+ S L+VA G ++ + A K
Sbjct: 530 --FQNAAMEFSMET---------LQPTFRVLWGSTGLSNALRVAKSIGFNKRILENAHKW 578
Query: 597 SQQM--KKSIGRTFRSSELRSEFSTLHEEWLKTLMSISRMEDGKSFDEDVLDTLICLWYE 654
++++ ++ + R S F +L EE K + ++ +F D+++ L++E
Sbjct: 579 TEKLNPEQDVERKG------SLFQSLMEERNKLKLQATKT---AAFHRDLMN----LYHE 625
Query: 655 LK 656
L+
Sbjct: 626 LE 627
>AT1G65070.1 | Symbols: | DNA mismatch repair protein MutS, type 2
| chr1:24173132-24176244 REVERSE LENGTH=857
Length = 857
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 145/302 (48%), Gaps = 40/302 (13%)
Query: 365 GPVLKMKGLWHPFALGE-------SGCLPVPNDIILGENEDRRHPCTLLLTGPNMGGKST 417
G + + HP LG PVP DI + + ++++GPN GGK+
Sbjct: 356 GLAVDIDSAQHPLLLGSVLGSPNGGDIFPVPVDIKVESSAK-----VVVISGPNTGGKTA 410
Query: 418 LLRATCLAVIMAQLGCYVPCENCV-ISVVDIIFTRLGATDRIMAGESTFFIECTETASVL 476
LL+ L +M++ G Y+P +NC + D+I +G + STF + +L
Sbjct: 411 LLKTLGLLSLMSKSGMYLPAKNCPRLPWFDLILADIGDPQSLEQSLSTFSGHISRIRQIL 470
Query: 477 QNATQDSLVILDELGRGTSTFDGYAIAYAVFRHLIEKVNCRLLFATHYHPLTKEFASHPR 536
A+++SLV+LDE+ GT +G A+A ++ +++ +VN ++ +THY L++ + PR
Sbjct: 471 DIASENSLVLLDEICSGTDPSEGVALATSILQYIKNRVNVAVV-STHYGDLSRLKDNEPR 529
Query: 537 VTMQHMACAFKSKSDTLSKRDQELVFLYRLASGACPESYGLQVALMAGIPEKTVNIASKA 596
Q+ A F ++ L +R+ G+ S L+VA G ++ + A K
Sbjct: 530 --FQNAAMEFSMET---------LQPTFRVLWGSTGLSNALRVAKSIGFNKRILENAHKW 578
Query: 597 SQQM--KKSIGRTFRSSELRSEFSTLHEEWLKTLMSISRMEDGKSFDEDVLDTLICLWYE 654
++++ ++ + R S F +L EE K + ++ +F D+++ L++E
Sbjct: 579 TEKLNPEQDVERKG------SLFQSLMEERNKLKLQATKT---AAFHRDLMN----LYHE 625
Query: 655 LK 656
L+
Sbjct: 626 LE 627