Miyakogusa Predicted Gene
- Lj2g3v0777020.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v0777020.1 tr|C0PK15|C0PK15_MAIZE Trihelix transcription
factor OS=Zea mays PE=2 SV=1,28.4,9e-19,coiled-coil,NULL;
Myb_DNA-bind_4,NULL; seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.35397.1
(357 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24490.1 | Symbols: | Alcohol dehydrogenase transcription fa... 264 8e-71
AT3G10030.2 | Symbols: | aspartate/glutamate/uridylate kinase f... 86 4e-17
AT3G10030.1 | Symbols: | aspartate/glutamate/uridylate kinase f... 86 5e-17
AT3G14180.1 | Symbols: | sequence-specific DNA binding transcri... 85 6e-17
AT3G58630.1 | Symbols: | sequence-specific DNA binding transcri... 82 5e-16
AT1G54060.1 | Symbols: ASIL1 | 6B-interacting protein 1-like 1 |... 79 3e-15
AT5G05550.1 | Symbols: | sequence-specific DNA binding transcri... 79 7e-15
AT5G05550.2 | Symbols: | sequence-specific DNA binding transcri... 78 1e-14
AT3G11100.1 | Symbols: | sequence-specific DNA binding transcri... 77 2e-14
AT3G24860.1 | Symbols: | Homeodomain-like superfamily protein |... 68 1e-11
AT3G54390.1 | Symbols: | sequence-specific DNA binding transcri... 63 4e-10
AT2G44730.1 | Symbols: | Alcohol dehydrogenase transcription fa... 59 7e-09
>AT3G24490.1 | Symbols: | Alcohol dehydrogenase transcription
factor Myb/SANT-like family protein |
chr3:8911022-8912023 FORWARD LENGTH=333
Length = 333
Score = 264 bits (674), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 152/344 (44%), Positives = 211/344 (61%), Gaps = 43/344 (12%)
Query: 1 MDDMEDDARYPPKSFPLSRQNPSSHRHKHPNRAAPFHHRPPTTRYKVXXXXXXXXXXXXX 60
M D ED+ YP K + L+RQN + P R A ++
Sbjct: 1 MGDSEDETGYPKKFYSLNRQNHPMYSRPIPKRHAYYNEEEDED----------------- 43
Query: 61 XXXXXXXXXAPENGYAGNFEEDDGFARKKRKLRGGPSNYEFAPRAKFPFGNRGGSSSA-- 118
P+ GY E +K++K S +EFA G S A
Sbjct: 44 --EVEGEEEDPQGGYIRGNER----FQKRQKPNKVVSGFEFA-----------GPSDAKV 86
Query: 119 AEEWTEHATLVLLEVWGDKFLQIGRNSLRSEEWHEVAEKVSDELKVERTVAQCMSVLDKL 178
A +W E VLLEVWGD+FLQ+GR SLR+E+W+EVAEKVS+EL++E++ QC ++D L
Sbjct: 87 AYDWREQEAFVLLEVWGDRFLQLGRRSLRNEDWNEVAEKVSEELRMEKSETQCRRMIDDL 146
Query: 179 KRRYKKEKARIDEMGVGVSSCKWPFFKKMDMLMASSARQEYGLACGVDSGEYVFMNTRVY 238
KR+Y+KEK ++++ G+G S KW FF K+DML+ S + + GLACGVDSGE+VFMNT+VY
Sbjct: 147 KRKYRKEKIKVEKSGLG--SSKWSFFNKLDMLLCVSPKSDLGLACGVDSGEFVFMNTKVY 204
Query: 239 LNRSNGFDEMRDSPGESETSEENDSXXXXXXXXXXXXXXXXXTSYRVLADSIQKFGKIYE 298
L++SNGFDEM DSPG+SE E+ D SY++LADS+++FGK+YE
Sbjct: 205 LDKSNGFDEMMDSPGDSEEEEDEDD-----EVEYERKKVNDAASYKMLADSVERFGKVYE 259
Query: 299 KIENTKRQQMMELEKMRLDFNRELELQKKQILERAEAEIAKMQE 342
K+E +K++QM ELEKMR DF R+LELQKKQI++RA++EIA+++E
Sbjct: 260 KMEKSKKEQMKELEKMRADFQRDLELQKKQIVDRAQSEIARLRE 303
>AT3G10030.2 | Symbols: | aspartate/glutamate/uridylate kinase
family protein | chr3:3092618-3094831 REVERSE LENGTH=520
Length = 520
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 74/131 (56%), Gaps = 15/131 (11%)
Query: 94 GGPSNY-EFAPRAKF--PFGNRGGSSSAAE------EWTEHATLVLLEVWGDKFLQIGRN 144
GG +N E P F P R SSSA E EW++ A LL+ + DKF Q+ R
Sbjct: 127 GGTTNGGEITPYGSFKRP---RTSSSSAGEYRKDREEWSDAAIACLLDAYSDKFTQLNRG 183
Query: 145 SLRSEEWHEVAEKVSDEL-KVERTVAQCMSVLDKLKRRYKKEKARIDEMGVGVSSCKWPF 203
+LR +W EVA VS+ K+ ++V QC + +D LK+RYK E+ R+ G S WP+
Sbjct: 184 NLRGRDWEEVASSVSERCEKLSKSVEQCKNKIDNLKKRYKLERHRMSSGGTAAS--HWPW 241
Query: 204 FKKMDMLMASS 214
FKKM+ ++ +S
Sbjct: 242 FKKMEDIVGNS 252
>AT3G10030.1 | Symbols: | aspartate/glutamate/uridylate kinase
family protein | chr3:3092277-3094831 REVERSE LENGTH=542
Length = 542
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 74/131 (56%), Gaps = 15/131 (11%)
Query: 94 GGPSNY-EFAPRAKF--PFGNRGGSSSAAE------EWTEHATLVLLEVWGDKFLQIGRN 144
GG +N E P F P R SSSA E EW++ A LL+ + DKF Q+ R
Sbjct: 127 GGTTNGGEITPYGSFKRP---RTSSSSAGEYRKDREEWSDAAIACLLDAYSDKFTQLNRG 183
Query: 145 SLRSEEWHEVAEKVSDEL-KVERTVAQCMSVLDKLKRRYKKEKARIDEMGVGVSSCKWPF 203
+LR +W EVA VS+ K+ ++V QC + +D LK+RYK E+ R+ G S WP+
Sbjct: 184 NLRGRDWEEVASSVSERCEKLSKSVEQCKNKIDNLKKRYKLERHRMSSGGTAAS--HWPW 241
Query: 204 FKKMDMLMASS 214
FKKM+ ++ +S
Sbjct: 242 FKKMEDIVGNS 252
>AT3G14180.1 | Symbols: | sequence-specific DNA binding
transcription factors | chr3:4707290-4708621 REVERSE
LENGTH=443
Length = 443
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 29/148 (19%)
Query: 95 GPSNYEFAP-------------RAKFPFGNRGGSSSAA----------EEWTEHATLVLL 131
GP +Y P A P GG ++++ + W+E AT VL+
Sbjct: 34 GPPSYSLTPPGNSSQKDPDALALALLPIQASGGGNNSSGRPTGGGGREDCWSEAATAVLI 93
Query: 132 EVWGDKFLQIGRNSLRSEEWHEVAEKVS---DELKVERTVAQCMSVLDKLKRRYKKEKAR 188
+ WG+++L++ R +L+ + W EVAE VS D K+ +T QC + +D +K++YK+EK R
Sbjct: 94 DAWGERYLELSRGNLKQKHWKEVAEIVSSREDYGKIPKTDIQCKNRIDTVKKKYKQEKVR 153
Query: 189 IDEMGVGVSSCKWPFFKKMDMLMASSAR 216
I G +W FF K+D L+ S+A+
Sbjct: 154 IANGG---GRSRWVFFDKLDRLIGSTAK 178
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 43/60 (71%)
Query: 283 YRVLADSIQKFGKIYEKIENTKRQQMMELEKMRLDFNRELELQKKQILERAEAEIAKMQE 342
+R L +I +FG+ YE+ EN K QQ++E+EK R+ F +ELELQ+ Q + + EI+++++
Sbjct: 350 WRELTRAIMRFGEAYEQTENAKLQQVVEMEKERMKFLKELELQRMQFFVKTQLEISQLKQ 409
>AT3G58630.1 | Symbols: | sequence-specific DNA binding
transcription factors | chr3:21683928-21685771 REVERSE
LENGTH=321
Length = 321
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 16/122 (13%)
Query: 122 WTEHATLVLLEVWGDKFLQIGRNSLRSEEWHEVAEKVSD------------ELKVERTVA 169
W+E AT L++ WG++++ + R +LR + W EVA V+D + + RT
Sbjct: 26 WSEEATFTLIQAWGNRYVDLSRGNLRQKHWQEVANAVNDRHYNTGRNVSAAKSQPYRTDV 85
Query: 170 QCMSVLDKLKRRYKKEKARIDEMGVGVSSCKWPFFKKMDMLMASSARQEYGLACGVDSGE 229
QC + +D LK++YK EKAR+ E G WPFF +D L+ R+ + + DS +
Sbjct: 86 QCKNRIDTLKKKYKVEKARVSESNPGAYISPWPFFSALDDLL----RESFPTSSNPDSTD 141
Query: 230 YV 231
+
Sbjct: 142 NI 143
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 42/59 (71%)
Query: 283 YRVLADSIQKFGKIYEKIENTKRQQMMELEKMRLDFNRELELQKKQILERAEAEIAKMQ 341
Y+ +AD+I++ G+IYE++E KR++M+ELEK R+ F +ELE + Q+ + + K++
Sbjct: 236 YKEVADAIERLGQIYERVEEKKRKEMVELEKQRMRFAKELECHRMQLFTEMQVRLHKLR 294
>AT1G54060.1 | Symbols: ASIL1 | 6B-interacting protein 1-like 1 |
chr1:20180972-20182123 FORWARD LENGTH=383
Length = 383
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 120/260 (46%), Gaps = 46/260 (17%)
Query: 122 WTEHATLVLLEVWGDKFLQIGRNSLRSEEWHEVAEKV--SDELKVERTVAQCMSVLDKLK 179
W+E AT VL+E WGD+F + G+ +L+ + W EVAE V S + K +T QC + +D +K
Sbjct: 94 WSEEATKVLIEAWGDRFSEPGKGTLKQQHWKEVAEIVNKSRQCKYPKTDIQCKNRIDTVK 153
Query: 180 RRYKKEKARIDEMGVGVSSCKWPFFKKMDMLM--------ASSARQEYGLACGVDSGEYV 231
++YK+EKA+I G KW FFKK++ L+ +S A ++ + + +
Sbjct: 154 KKYKQEKAKI---ASGDGPSKWVFFKKLESLIGGTTTFIASSKASEKAPMGGALGNSRSS 210
Query: 232 FMNTRVYLNR-------SNGFDEMR-------DSPGESETSEENDSXXXXXXXXXXXXXX 277
+ N+ G D MR S ESE+ E ++
Sbjct: 211 MFKRQTKGNQIVQQQQEKRGSDSMRWHFRKRSASETESESDPEPEASPEESAESLPPLQP 270
Query: 278 XXXTSYRV------------------LADSIQKFGKIYEKIENTKRQQMMELEKMRLDFN 319
S+ + +A +I F + YEK E K + M ELEK R+ F
Sbjct: 271 IQPLSFHMPKRLKVDKSGGGGSGVGDVARAILGFTEAYEKAETAKLKLMAELEKERMKFA 330
Query: 320 RELELQKKQILERAEAEIAK 339
+E+ELQ+ Q L + + EI +
Sbjct: 331 KEMELQRMQFL-KTQLEITQ 349
>AT5G05550.1 | Symbols: | sequence-specific DNA binding
transcription factors | chr5:1639344-1640550 REVERSE
LENGTH=246
Length = 246
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 117/228 (51%), Gaps = 29/228 (12%)
Query: 122 WTEHATLVLLEVWGDKFLQIGRNSLRSEEWHEVAEKVSD---ELKVERTVAQCMSVLDKL 178
W+E AT L+E WG++++++ +LR +W +VA+ V+ + ++T QC + +D L
Sbjct: 24 WSEEATATLVEAWGNRYVKLNHGNLRQNDWKDVADAVNSRHGDNSRKKTDLQCKNRVDTL 83
Query: 179 KRRYKKEKARIDEMGVGVSSCKWPFFKKMDMLMASSARQEYGLACGVDSGEYVFMNTRVY 238
K++YK EKA++ S W F+ ++D+L+ ++ G V S + + +
Sbjct: 84 KKKYKTEKAKL-------SPSTWRFYNRLDVLIGPVVKKSAGGV--VKSAPF-----KNH 129
Query: 239 LNRSNGFDEMRDSPGESETSEENDSX-------XXXXXXXXXXXXXXXXTSYRVLADSIQ 291
LN + +S G S ++ D ++ R LA +I
Sbjct: 130 LNPTGS-----NSTGSSLEDDDEDDDEVGDWEFVARKHPRVEEVDLSEGSTCRELATAIL 184
Query: 292 KFGKIYEKIENTKRQQMMELEKMRLDFNRELELQKKQILERAEAEIAK 339
KFG++YE+IE K+Q M+ELEK R++ +E+EL++ +L + EI K
Sbjct: 185 KFGEVYERIEGKKQQMMIELEKQRMEVTKEVELKRMNMLMEMQLEIEK 232
>AT5G05550.2 | Symbols: | sequence-specific DNA binding
transcription factors | chr5:1639529-1640550 REVERSE
LENGTH=249
Length = 249
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 117/228 (51%), Gaps = 29/228 (12%)
Query: 122 WTEHATLVLLEVWGDKFLQIGRNSLRSEEWHEVAEKVSD---ELKVERTVAQCMSVLDKL 178
W+E AT L+E WG++++++ +LR +W +VA+ V+ + ++T QC + +D L
Sbjct: 24 WSEEATATLVEAWGNRYVKLNHGNLRQNDWKDVADAVNSRHGDNSRKKTDLQCKNRVDTL 83
Query: 179 KRRYKKEKARIDEMGVGVSSCKWPFFKKMDMLMASSARQEYGLACGVDSGEYVFMNTRVY 238
K++YK EKA++ S W F+ ++D+L+ ++ G V S + + +
Sbjct: 84 KKKYKTEKAKL-------SPSTWRFYNRLDVLIGPVVKKSAGGV--VKSAPF-----KNH 129
Query: 239 LNRSNGFDEMRDSPGESETSEENDSX-------XXXXXXXXXXXXXXXXTSYRVLADSIQ 291
LN + +S G S ++ D ++ R LA +I
Sbjct: 130 LNPTGS-----NSTGSSLEDDDEDDDEVGDWEFVARKHPRVEEVDLSEGSTCRELATAIL 184
Query: 292 KFGKIYEKIENTKRQQMMELEKMRLDFNRELELQKKQILERAEAEIAK 339
KFG++YE+IE K+Q M+ELEK R++ +E+EL++ +L + EI K
Sbjct: 185 KFGEVYERIEGKKQQMMIELEKQRMEVTKEVELKRMNMLMEMQLEIEK 232
>AT3G11100.1 | Symbols: | sequence-specific DNA binding
transcription factors | chr3:3476490-3477320 REVERSE
LENGTH=249
Length = 249
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 110/225 (48%), Gaps = 18/225 (8%)
Query: 122 WTEHATLVLLEVWGDKFLQIGRNSLRSEEWHEVAEKVSDELKVER--TVAQCMSVLDKLK 179
W+E AT L+E WGD+++ + R +LR +W EVA+ V+ R T QC + +D LK
Sbjct: 22 WSEDATATLIEAWGDRYVNLNRGNLRQNDWKEVADAVNSSHGNGRPKTDVQCKNRIDTLK 81
Query: 180 RRYKKEKARIDEMGVGVSSCKWPFFKKMDMLMASSARQEYGLACGVDSGEYVFMNTRVYL 239
++YK EKA+ W FF ++D L+ ++ G V + N
Sbjct: 82 KKYKTEKAK--------PLSNWCFFDRLDFLIGPVMKKSSG---AVVKSALMNPNLNPTG 130
Query: 240 NRSNGFDEMRDSPGESETSEENDSX-----XXXXXXXXXXXXXXXXTSYRVLADSIQKFG 294
++S G D + + E++D +++R LA SI K G
Sbjct: 131 SKSTGSSLDDDDDDDDDDEEDDDDAGDWGFVVRKHRKVEDVDSSEGSAFRELARSILKLG 190
Query: 295 KIYEKIENTKRQQMMELEKMRLDFNRELELQKKQILERAEAEIAK 339
+ +E+IE K+Q M+ELEK R++ +ELELQ+ +L + E+ K
Sbjct: 191 EAFERIEGKKQQMMIELEKQRMEVAKELELQRMNMLMEMQLELEK 235
>AT3G24860.1 | Symbols: | Homeodomain-like superfamily protein |
chr3:9073642-9074574 FORWARD LENGTH=310
Length = 310
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 55/93 (59%), Gaps = 6/93 (6%)
Query: 122 WTEHATLVLLEVWGDKFLQIGRNSLRSEEWHEVAEKVSDELKVERTVAQCMSVLDKLKRR 181
WT+ TL+L+E + +K+ IGR L+S W E+A S VERT QC ++K+++R
Sbjct: 65 WTQDETLLLIESYKEKWFAIGRGPLKSTHWEEIAVAASSRSGVERTSTQCRHKIEKMRKR 124
Query: 182 YKKEKARIDEMGVGVSSCKWPFFKKMDMLMASS 214
++ E+ + + + WPF+ +M+ L +S+
Sbjct: 125 FRSERQSMGPISI------WPFYNQMEELDSSN 151
>AT3G54390.1 | Symbols: | sequence-specific DNA binding
transcription factors | chr3:20137912-20138863 REVERSE
LENGTH=296
Length = 296
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 103/246 (41%), Gaps = 32/246 (13%)
Query: 120 EEWTEHATLVLLEVWGDKFLQIGRNSLRSEEWHEVAEKVSD---ELKVERTVAQCMSVLD 176
+EW+E A LLE + K++ R L+ ++W +VA+ VS K +T QC + ++
Sbjct: 36 DEWSEGAVSTLLEAYESKWVLRNRAKLKGQDWEDVAKHVSSRATHTKSPKTQTQCKNKIE 95
Query: 177 KLKRRYKKEKARIDEMGVGVSSCKWPFFKKMDMLMASSARQE-----YGLACGVDSGEYV 231
+K+RY+ E A D WP + ++D L+ + Q L C V
Sbjct: 96 SMKKRYRSESATAD-------GSSWPLYPRLDHLLRGTQPQPQPQAVLPLNCSVPLLLLE 148
Query: 232 FMNTRV-----YLNRSNGFDEMRDSPG-----ESETSEENDSXXXXXXXXXXXXXXXXXT 281
V SNG ++ G + E E D+
Sbjct: 149 PPLPAVAHPPQISYGSNGVGKIPKEDGFKPENKPEKDAEMDTDSSTPVVKTKVRGKKVKR 208
Query: 282 SYR----VLADSIQKFGKIYEKIENTKRQQMMELEKMRLDFNR---ELELQKKQILERAE 334
Y+ +A SI+ ++ + E + + M E+E+MR + EL+L++ +I+ +
Sbjct: 209 RYKEEKEEIAGSIRWLAEVVMRSERARMETMKEIERMRAEAEAKRGELDLKRTEIMANTQ 268
Query: 335 AEIAKM 340
EIA++
Sbjct: 269 LEIARI 274
>AT2G44730.1 | Symbols: | Alcohol dehydrogenase transcription
factor Myb/SANT-like family protein |
chr2:18437447-18438565 REVERSE LENGTH=372
Length = 372
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Query: 105 AKFPFGNRGGSSSAAEEWTEHATLVLLEVWGDKFLQIGRNSLRSEEWHEVAEKV---SDE 161
A P ++ W+ T+ L++ + DK+ + R +L++ W EVAE V +
Sbjct: 47 ASIPTASKNSRRLPPPCWSLEETIALIDAYRDKWYALNRGNLKANHWEEVAEAVGANCPD 106
Query: 162 LKVERTVAQCMSVLDKLKRRYKKEKARIDEMGVGVSSCKWPFFKKMDML 210
+ +++T QC ++KL++RY+ E R + V W FK+M+ +
Sbjct: 107 VILKKTAVQCRHKMEKLRKRYRTEIQRARSVPVARFISSWVHFKRMEAM 155