Miyakogusa Predicted Gene

Lj2g3v0741700.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0741700.1 Non Chatacterized Hit- tr|G1TQW9|G1TQW9_RABIT
Uncharacterized protein (Fragment) OS=Oryctolagus
cuni,29.09,1e-18,seg,NULL; coiled-coil,NULL; SUBFAMILY NOT NAMED,NULL;
SYNTAXIN-18,NULL; Syntaxin-18_N,SNARE-complex ,CUFF.35329.1
         (309 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G51740.1 | Symbols: SYP81, ATUFE1, ATSYP81, UFE1 | syntaxin o...   404   e-113

>AT1G51740.1 | Symbols: SYP81, ATUFE1, ATSYP81, UFE1 | syntaxin of
           plants 81 | chr1:19189063-19191188 FORWARD LENGTH=310
          Length = 310

 Score =  404 bits (1038), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/310 (67%), Positives = 239/310 (77%), Gaps = 1/310 (0%)

Query: 1   MAKARDRTEDFKDAVRHSARSLGYDEAKLASILASFIIHKPPQRSPFYKAALKTLESIGE 60
           M++ RDRTEDFKD+VR+SA S+GY+E+K+AS +ASFIIHKP +RSPF KAA KTL+SI E
Sbjct: 1   MSRFRDRTEDFKDSVRNSAVSIGYNESKVASTMASFIIHKPKERSPFTKAAFKTLDSIKE 60

Query: 61  LEQFLLKHRKDYTDLHRTTEQERDSIEQEVSAFIKTCQEQIDVLKNSINNEEETSKGWLG 120
           LE F+LKHRKDY DLHRTTEQE+DSIEQEV+AFIK C+EQID+L NSI NEE  SKGWLG
Sbjct: 61  LELFMLKHRKDYVDLHRTTEQEKDSIEQEVAAFIKACKEQIDILINSIRNEEANSKGWLG 120

Query: 121 IATAKANADTIAHKHGVVLILSERLHPVTAQFDQPRAVRFQYATNRSTPRRKLNRVTRKN 180
           +     NAD+IAHKHGVVLILSE+LH VTAQFDQ RA RFQ   NR+ PRRK  RV ++ 
Sbjct: 121 LPADNFNADSIAHKHGVVLILSEKLHSVTAQFDQLRATRFQDIINRAMPRRKPKRVIKEA 180

Query: 181 TTETSESGDMELREPDEL-RSEPLRVQQQLLDDETRALQVELTNLLDTVQETETKMVEMS 239
           T   +  G+ E  EPDE+        QQQLLDDET+ALQVEL+NLLD  ++TETKMVEMS
Sbjct: 181 TPINTTLGNSESIEPDEIQAQPRRLQQQQLLDDETQALQVELSNLLDGARQTETKMVEMS 240

Query: 240 ALNHLMSTHVLQQAHQIEHLYEQAVEATKNVELGNKELSQAIQRNXXXXXXXXXXXXXXX 299
           ALNHLM+THVLQQA QIE LY+QAVEATKNVELGNKELSQAIQRN               
Sbjct: 241 ALNHLMATHVLQQAQQIEFLYDQAVEATKNVELGNKELSQAIQRNSSSRTFLLLFFFVLT 300

Query: 300 XXXXXXDWYS 309
                 DWYS
Sbjct: 301 FSVLFLDWYS 310