Miyakogusa Predicted Gene

Lj2g3v0740640.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0740640.1 Non Chatacterized Hit- tr|D8RXR2|D8RXR2_SELML
Putative uncharacterized protein (Fragment)
OS=Selagin,46.32,3e-19,DNase
I-like,Endonuclease/exonuclease/phosphatase; no description,NULL;
CARBON CATABOLITE REPRESSOR ,CUFF.35305.1
         (173 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G73875.1 | Symbols:  | DNAse I-like superfamily protein | chr...   157   2e-39
AT5G11350.1 | Symbols:  | DNAse I-like superfamily protein | chr...   101   3e-22
AT3G18500.3 | Symbols:  | DNAse I-like superfamily protein | chr...    99   2e-21
AT3G18500.2 | Symbols:  | DNAse I-like superfamily protein | chr...    99   2e-21
AT3G18500.1 | Symbols:  | DNAse I-like superfamily protein | chr...    67   4e-12
AT3G58580.1 | Symbols:  | DNAse I-like superfamily protein | chr...    62   3e-10
AT3G58560.1 | Symbols:  | DNAse I-like superfamily protein | chr...    60   5e-10
AT1G31500.1 | Symbols:  | DNAse I-like superfamily protein | chr...    60   5e-10
AT1G31500.3 | Symbols:  | DNAse I-like superfamily protein | chr...    60   7e-10
AT1G31500.2 | Symbols:  | DNAse I-like superfamily protein | chr...    60   7e-10
AT1G31500.4 | Symbols:  | DNAse I-like superfamily protein | chr...    60   7e-10

>AT1G73875.1 | Symbols:  | DNAse I-like superfamily protein |
           chr1:27781112-27784571 FORWARD LENGTH=454
          Length = 454

 Score =  157 bits (398), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 71/110 (64%), Positives = 87/110 (79%)

Query: 64  RRWVFSSKDCSNCMDKVVVVSYNILGVENASRHLDLYSNIPRSFLAWDRRKSLILEEINH 123
           R WVFS+ +  N  DK+V+VSYN+LGV+NAS H+DLY N+PR  L W RRK LI +EI+ 
Sbjct: 84  REWVFSANNFENLADKLVLVSYNLLGVDNASNHMDLYYNVPRKHLEWSRRKHLICKEISR 143

Query: 124 YNASILCFQEVDHFNDLDGLFQNNGFKGVYKARTGGARDGCAIFWKDKLF 173
           YNASILC QEVD F+DLD L +N GF+GV+K+RTG A DGCAIFWK+ LF
Sbjct: 144 YNASILCLQEVDRFDDLDVLLKNRGFRGVHKSRTGEASDGCAIFWKENLF 193


>AT5G11350.1 | Symbols:  | DNAse I-like superfamily protein |
           chr5:3621583-3625412 FORWARD LENGTH=754
          Length = 754

 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 58/149 (38%), Positives = 84/149 (56%), Gaps = 15/149 (10%)

Query: 26  RKRQSLPPPGNSSGRHHRSKRMRHSESDHSGLNCGVFSRRWVFSSKDCSNCMDKVVVVSY 85
           + + S PPP  S  +  RSK      SD+         R W ++    S   +K VV+SY
Sbjct: 143 QNQMSRPPPQQSFRQRPRSK-----PSDY---------REWEYAKTPPSPGSEKFVVLSY 188

Query: 86  NILGVENASRHL-DLYSNIPRSFLAWDRRKSLILEEINHYNASILCFQEVDHFNDLDGLF 144
           NIL    A+ H   LY +IPR+ L+W  RKS ++ E++ ++A I+C QEVD F DL+   
Sbjct: 189 NILADYLANDHWRSLYFHIPRNMLSWGWRKSKLVFELSLWSADIMCLQEVDKFQDLEEEM 248

Query: 145 QNNGFKGVYKARTGGARDGCAIFWKDKLF 173
           ++ G+  ++K RTG A DGCAIFW+   F
Sbjct: 249 KHRGYSAIWKMRTGNAVDGCAIFWRSNRF 277


>AT3G18500.3 | Symbols:  | DNAse I-like superfamily protein |
           chr3:6352544-6355297 FORWARD LENGTH=449
          Length = 449

 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 67/113 (59%), Gaps = 1/113 (0%)

Query: 62  FSRRWVFS-SKDCSNCMDKVVVVSYNILGVENASRHLDLYSNIPRSFLAWDRRKSLILEE 120
            +R W+ S +   S  +++  VVSYNILG  N+S H +LYSN+   +L W  RK LI EE
Sbjct: 90  IARDWIDSDTTPVSQALERFTVVSYNILGDGNSSYHRELYSNVSVPYLKWGYRKRLICEE 149

Query: 121 INHYNASILCFQEVDHFNDLDGLFQNNGFKGVYKARTGGARDGCAIFWKDKLF 173
           +   N  I+  QEVD + DL  + +  G+ G YK RTG   DGCA+FWK   F
Sbjct: 150 LIRLNPDIISMQEVDKYFDLFSMMEKAGYAGSYKRRTGDNVDGCAMFWKADRF 202


>AT3G18500.2 | Symbols:  | DNAse I-like superfamily protein |
           chr3:6352544-6355297 FORWARD LENGTH=448
          Length = 448

 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 67/113 (59%), Gaps = 1/113 (0%)

Query: 62  FSRRWVFS-SKDCSNCMDKVVVVSYNILGVENASRHLDLYSNIPRSFLAWDRRKSLILEE 120
            +R W+ S +   S  +++  VVSYNILG  N+S H +LYSN+   +L W  RK LI EE
Sbjct: 90  IARDWIDSDTTPVSQALERFTVVSYNILGDGNSSYHRELYSNVSVPYLKWGYRKRLICEE 149

Query: 121 INHYNASILCFQEVDHFNDLDGLFQNNGFKGVYKARTGGARDGCAIFWKDKLF 173
           +   N  I+  QEVD + DL  + +  G+ G YK RTG   DGCA+FWK   F
Sbjct: 150 LIRLNPDIISMQEVDKYFDLFSMMEKAGYAGSYKRRTGDNVDGCAMFWKADRF 202


>AT3G18500.1 | Symbols:  | DNAse I-like superfamily protein |
           chr3:6352544-6355297 FORWARD LENGTH=426
          Length = 426

 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 54/113 (47%), Gaps = 23/113 (20%)

Query: 62  FSRRWVFS-SKDCSNCMDKVVVVSYNILGVENASRHLDLYSNIPRSFLAWDRRKSLILEE 120
            +R W+ S +   S  +++  VVSYNILG  N+S H +LYSN+   +L W  RK LI EE
Sbjct: 90  IARDWIDSDTTPVSQALERFTVVSYNILGDGNSSYHRELYSNVSVPYLKWGYRKRLICEE 149

Query: 121 INHYNASILCFQEVDHFNDLDGLFQNNGFKGVYKARTGGARDGCAIFWKDKLF 173
           +   N  I+  Q                       RTG   DGCA+FWK   F
Sbjct: 150 LIRLNPDIISMQR----------------------RTGDNVDGCAMFWKADRF 180


>AT3G58580.1 | Symbols:  | DNAse I-like superfamily protein |
           chr3:21660866-21663697 REVERSE LENGTH=603
          Length = 603

 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 55/99 (55%), Gaps = 12/99 (12%)

Query: 81  VVVSYNILGVENASRHLDLYSNIPRSFLAWDRRKSLILEEINHYNASILCFQEV--DHFN 138
            V+SYNIL   +AS   DLYS  P   L+W  R+  +L EI  Y A ++C QEV  DHF+
Sbjct: 252 TVLSYNILSDTSASS--DLYSYCPPWALSWPYRRQNLLREIVGYRADVVCLQEVQSDHFH 309

Query: 139 DLDGL-FQNNGFKGVYKARTG-------GARDGCAIFWK 169
           ++       +G++ +YK +T         A DGCA F++
Sbjct: 310 EIFAPELDKHGYQALYKRKTNEVLSGSTSAIDGCATFFR 348


>AT3G58560.1 | Symbols:  | DNAse I-like superfamily protein |
           chr3:21650880-21653896 REVERSE LENGTH=602
          Length = 602

 Score = 60.5 bits (145), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/107 (37%), Positives = 54/107 (50%), Gaps = 12/107 (11%)

Query: 77  MDKVVVVSYNILGVENASRHLDLYSNIPRSFLAWDRRKSLILEEINHYNASILCFQEV-- 134
           M    V+SYNIL    AS   D+YS  P   LAW  R+  +L EI  Y A I+C QEV  
Sbjct: 245 MGTFTVLSYNILSDTYASS--DIYSYCPTWALAWTYRRQNLLREIVKYRADIVCLQEVQN 302

Query: 135 DHFNDLD-GLFQNNGFKGVYKARTG-------GARDGCAIFWKDKLF 173
           DHF +        +G++G++K +T           DGCA F++   F
Sbjct: 303 DHFEEFFLPELDKHGYQGLFKRKTNEVFIGNTNTIDGCATFFRRDRF 349


>AT1G31500.1 | Symbols:  | DNAse I-like superfamily protein |
           chr1:11273821-11276534 REVERSE LENGTH=388
          Length = 388

 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 10/93 (10%)

Query: 82  VVSYNILGVENASRHLDLYSNIPRSFLAWDRRKSLILEEINHYNASILCFQEVDHFNDLD 141
           +VSYNIL        L  +S  P + L W  R   IL  + +  A   C QEVD +   D
Sbjct: 65  LVSYNILAQVYVKSALLPHS--PPACLKWKARSHAILSVLKNLQADFFCLQEVDEY---D 119

Query: 142 GLFQNN----GFKGVYKARTGG-ARDGCAIFWK 169
             ++NN    G+ G+Y  RTG   RDGCAIF+K
Sbjct: 120 SFYRNNMDSLGYSGIYIQRTGQRKRDGCAIFYK 152


>AT1G31500.3 | Symbols:  | DNAse I-like superfamily protein |
           chr1:11274230-11276534 REVERSE LENGTH=283
          Length = 283

 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 10/93 (10%)

Query: 82  VVSYNILGVENASRHLDLYSNIPRSFLAWDRRKSLILEEINHYNASILCFQEVDHFNDLD 141
           +VSYNIL        L  +S  P + L W  R   IL  + +  A   C QEVD +   D
Sbjct: 60  LVSYNILAQVYVKSALLPHS--PPACLKWKARSHAILSVLKNLQADFFCLQEVDEY---D 114

Query: 142 GLFQNN----GFKGVYKARTGG-ARDGCAIFWK 169
             ++NN    G+ G+Y  RTG   RDGCAIF+K
Sbjct: 115 SFYRNNMDSLGYSGIYIQRTGQRKRDGCAIFYK 147


>AT1G31500.2 | Symbols:  | DNAse I-like superfamily protein |
           chr1:11273821-11276147 REVERSE LENGTH=358
          Length = 358

 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 10/93 (10%)

Query: 82  VVSYNILGVENASRHLDLYSNIPRSFLAWDRRKSLILEEINHYNASILCFQEVDHFNDLD 141
           +VSYNIL        L  +S  P + L W  R   IL  + +  A   C QEVD +   D
Sbjct: 35  LVSYNILAQVYVKSALLPHS--PPACLKWKARSHAILSVLKNLQADFFCLQEVDEY---D 89

Query: 142 GLFQNN----GFKGVYKARTGG-ARDGCAIFWK 169
             ++NN    G+ G+Y  RTG   RDGCAIF+K
Sbjct: 90  SFYRNNMDSLGYSGIYIQRTGQRKRDGCAIFYK 122


>AT1G31500.4 | Symbols:  | DNAse I-like superfamily protein |
           chr1:11273821-11276534 REVERSE LENGTH=417
          Length = 417

 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 10/93 (10%)

Query: 82  VVSYNILGVENASRHLDLYSNIPRSFLAWDRRKSLILEEINHYNASILCFQEVDHFNDLD 141
           +VSYNIL        L  +S  P + L W  R   IL  + +  A   C QEVD +   D
Sbjct: 94  LVSYNILAQVYVKSALLPHS--PPACLKWKARSHAILSVLKNLQADFFCLQEVDEY---D 148

Query: 142 GLFQNN----GFKGVYKARTGG-ARDGCAIFWK 169
             ++NN    G+ G+Y  RTG   RDGCAIF+K
Sbjct: 149 SFYRNNMDSLGYSGIYIQRTGQRKRDGCAIFYK 181