Miyakogusa Predicted Gene
- Lj2g3v0726310.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v0726310.1 Non Chatacterized Hit- tr|I1KIX7|I1KIX7_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,72.22,0,YhbY-like,RNA-binding, CRM domain; seg,NULL; no
description,RNA-binding, CRM domain; CRM,RNA-binding,CUFF.35280.1
(623 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G18390.1 | Symbols: EMB1865 | CRS1 / YhbY (CRM) domain-contai... 714 0.0
AT4G14510.1 | Symbols: ATCFM3B, CFM3B | CRM family member 3B | c... 443 e-124
AT4G29750.1 | Symbols: | CRS1 / YhbY (CRM) domain-containing pr... 422 e-118
AT3G23070.1 | Symbols: ATCFM3A, CFM3A | CRM family member 3A | c... 411 e-115
AT3G01370.1 | Symbols: ATCFM2, CFM2 | CRM family member 2 | chr3... 407 e-113
AT5G16180.1 | Symbols: CRS1, ATCRS1 | ortholog of maize chloropl... 338 5e-93
AT3G25440.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain p... 97 3e-20
AT3G25440.2 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain p... 97 5e-20
AT2G28480.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain p... 94 2e-19
AT4G13070.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain p... 91 2e-18
AT3G27550.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain p... 77 3e-14
>AT3G18390.1 | Symbols: EMB1865 | CRS1 / YhbY (CRM)
domain-containing protein | chr3:6313572-6317584 FORWARD
LENGTH=848
Length = 848
Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/561 (62%), Positives = 416/561 (74%), Gaps = 44/561 (7%)
Query: 1 MDKIHEKWRKEELVRLKFHEELARNMKIAHEIVERRTGGLVTWRSGSIMMVYRGINYQGP 60
M+KI++ WRKEELVRLKFHE LAR+MK AHEIVERRTGG+V WR+GS+M+VYRG++Y+GP
Sbjct: 274 MEKIYDTWRKEELVRLKFHEVLARDMKTAHEIVERRTGGMVIWRAGSVMVVYRGLDYKGP 333
Query: 61 PSTKELDEKEGDGFFIPDVSSGSLPSTKDSNAIANSS--LEKSELAARNQEQPKNMTEEE 118
P + F+PDVSS +T NA N S L + +N + +NMTEEE
Sbjct: 334 PVISNQMAGPKETLFVPDVSSAGDEAT---NAKDNQSAPLVIKDPIIKNPIRKENMTEEE 390
Query: 119 AEYNALLDGLGPRFVEWWGTGVLPVDADLLPRTVPGYKTPFRLLPAGMRSRLTNAEMTNL 178
E+N+LLD LGPRF EWWGTGVLPVDADLLP T+PGYKTPFRLLP GMRS LTNAEMTNL
Sbjct: 391 VEFNSLLDSLGPRFQEWWGTGVLPVDADLLPPTIPGYKTPFRLLPTGMRSNLTNAEMTNL 450
Query: 179 RKLAKSLPCHFSLGRNRNHQGLACAILKLWEKSLLAKIAIKRGIQNTNNKLMADEXXXXX 238
RK+ K+LPCHF+LGRNRNHQGLA AIL++WEKSL+AKIA+KRGIQNTNNKLMADE
Sbjct: 451 RKIGKTLPCHFALGRNRNHQGLAAAILQIWEKSLIAKIAVKRGIQNTNNKLMADEVKTLT 510
Query: 239 XXXXXXRNKYYIVIYRGKDFVPTDVAAVLAERQELTKQVQDVEEKVRCRAVDATSGQGEA 298
RNKYYIVIYRGKDF+P+ VAA LAERQELTK++QDVEE+VR R + EA
Sbjct: 511 GGVLLLRNKYYIVIYRGKDFLPSSVAATLAERQELTKEIQDVEERVRNREI-------EA 563
Query: 299 TTPAGAAVLAERQELTEQVQDVEEKVHCRAVDATSGQGESTTPAGSLAEFYEAKARWGRD 358
P G V AE AG+LAEFYEA+ARWG++
Sbjct: 564 VQPVGDKVPAE--------------------------------AGTLAEFYEAQARWGKE 591
Query: 359 ISTEEREKMKEEVANAKTVKLVRHTEHKLSXXXXXXXXXXXXXXXXXXXMVPGGPDYDQE 418
I+ + REKM EE + ++V+ +HKL+ M+P GPDYDQE
Sbjct: 592 ITPDHREKMIEEASRVANARVVKRIQHKLNLAQSKFQRAEKLLSKIEASMIPNGPDYDQE 651
Query: 419 TITEEERVVFRRIGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLAFVED 478
I+EEER +FR++GL+MKAYLP+GIRGVFDGVIENMHLHWKHRELVKLISKQK AFVE+
Sbjct: 652 VISEEERAMFRKVGLKMKAYLPIGIRGVFDGVIENMHLHWKHRELVKLISKQKNQAFVEE 711
Query: 479 TARLLEYESGGILVAIERVSKGFALIYYRGKNYKRPITLRPRNLLTKQKALKRSIAMQRH 538
TARLLEYESGG+LVAIE+V KGFALIYYRGKNY+RPI+LRPRNLLTK KALKRSIAMQRH
Sbjct: 712 TARLLEYESGGVLVAIEKVPKGFALIYYRGKNYRRPISLRPRNLLTKAKALKRSIAMQRH 771
Query: 539 EALSQHITELEKNIDEMNKEL 559
EALSQHI+ELE+ I++M +L
Sbjct: 772 EALSQHISELERTIEQMQSQL 792
>AT4G14510.1 | Symbols: ATCFM3B, CFM3B | CRM family member 3B |
chr4:8337390-8341057 REVERSE LENGTH=907
Length = 907
Score = 443 bits (1139), Expect = e-124, Method: Compositional matrix adjust.
Identities = 246/572 (43%), Positives = 353/572 (61%), Gaps = 33/572 (5%)
Query: 1 MDKIHEKWRKEELVRLKFHEELARNMKIAHEIVERRTGGLVTWRSGSIMMVYRGINYQGP 60
+D I EKW+ E+VRLK A NM+ HEI+ER+TGGLV WRSG+ + +Y NY+G
Sbjct: 253 VDAIQEKWKGSEIVRLKIEGSSALNMRRMHEILERKTGGLVIWRSGTSIALY---NYKGG 309
Query: 61 PSTKELDEKEGDGFFIPDV--SSGSLPSTKDSNAIANS-------SLEKSELAARNQEQ- 110
+ ++G G V + LPS+ ++ + S LEK N+++
Sbjct: 310 SN------RDGSGNMNKQVYRRAERLPSSLPTSTVDQSVQLVNLPQLEKEPTVVGNKDRT 363
Query: 111 -PKNMTEEEAEYNALLDGLGPRFVEWWGTGVLPVDADLLPRTVPGYKTPFRLLPAGMRSR 169
P+ + E E E N LL+GLGPR+ +W G LPVDADLLP VPGY+ PFR LP G+RS
Sbjct: 364 SPQEV-EYEDEINELLEGLGPRYTDWQGGYPLPVDADLLPGIVPGYEPPFRALPYGVRST 422
Query: 170 LTNAEMTNLRKLAKSLPCHFSLGRNRNHQGLACAILKLWEKSLLAKIAIKRGIQNTNNKL 229
L E T+LR++A LP HF+LGR+R QGLA A++KLW+KSL+AK+A+KRG+Q T ++
Sbjct: 423 LGTKEATSLRRIATVLPPHFALGRSRQLQGLATAMVKLWQKSLIAKVALKRGVQLTTSER 482
Query: 230 MADEXXXXXXXXXXXRNKYYIVIYRGKDFVPTDVAAVLAERQELTKQVQDVEEKVRCRAV 289
MA++ RNK ++V YRGK F+ +V L E++ L + +QD EE+ R RA
Sbjct: 483 MAEDIKRLTGGMLLSRNKDFLVFYRGKSFLSLEVGEALMEKEMLVRTLQDEEEQARLRAS 542
Query: 290 DATSGQGEATTPAGAAVLAERQELTEQVQDVEEKVHCRA-VDATSGQGESTTPAGSLAEF 348
A P+ A Q+L +QD EE+ A V ++ ++ AG+L E
Sbjct: 543 SAL------VVPSIKA----NQQLARTLQDKEEQARPSALVLPSTKANQNLVSAGTLGET 592
Query: 349 YEAKARWGRDISTEER-EKMKEEVANAKTVKLVRHTEHKLSXXXXXXXXXXXXXXXXXXX 407
+A +WG+++ ++ E+MK+EV ++ KLVR E KL+
Sbjct: 593 LDATGKWGKNLDNDDHVEEMKQEVEKVRSAKLVRKLERKLAFAEKKLLKAERALAKVEES 652
Query: 408 MVPGGPDYDQETITEEERVVFRRIGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLI 467
+ P D E ITEEER +F+++GL+MKA+L LG RGVFDG +ENMHLHWK+REL+K++
Sbjct: 653 LKPAEQRTDLEGITEEERFMFQKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELIKIL 712
Query: 468 SKQKTLAFVEDTARLLEYESGGILVAIERVSKGFALIYYRGKNYKRPITLRPRNLLTKQK 527
K KTL + A LE ESGGILV+++++SKG+A+I YRGK+YKRP TLRP+NLLTK+K
Sbjct: 713 VKAKTLEGAQKVAMALEAESGGILVSVDKISKGYAVIVYRGKDYKRPTTLRPKNLLTKRK 772
Query: 528 ALKRSIAMQRHEALSQHITELEKNIDEMNKEL 559
AL RS+ +Q+ EAL +HI ++ +++ E+
Sbjct: 773 ALARSLELQKREALIKHIEAIQTRSEQLRAEI 804
>AT4G29750.1 | Symbols: | CRS1 / YhbY (CRM) domain-containing
protein | chr4:14569728-14572962 FORWARD LENGTH=841
Length = 841
Score = 422 bits (1086), Expect = e-118, Method: Compositional matrix adjust.
Identities = 239/582 (41%), Positives = 338/582 (58%), Gaps = 59/582 (10%)
Query: 1 MDKIHEKWRKEELVRLKFHEELARNMKIAHEIVERRTGGLVTWRSGSIMMVYRGINYQGP 60
++ IHEKW +E+V+LKF E + NMK HE++E++TGGLV WRSGS +++YRGI+Y+
Sbjct: 275 VEAIHEKWEVDEVVKLKFSEPYSLNMKRTHEVLEKKTGGLVIWRSGSSVVLYRGISYK-- 332
Query: 61 PSTKELDEKEGDGFFIPDVSSGSLPSTKDSNAIANSSLEKSELAARNQEQPKNMTEEE-- 118
+ V + + ++N + S+E + + PKN+ +E+
Sbjct: 333 ---------------LKCVQTFIKQNNLEANPEIHRSVEARDYVQEDGNYPKNVPKEQLS 377
Query: 119 --AEYNALLDGLGPRFVEWWGTGVLPVDADLLPRTVPGYKTPFRLLPAGMRSRLTNAEMT 176
E N LLD +GPRF +W G PVDADLLP V GY+ PFR+LP G++ L+N EMT
Sbjct: 378 ELCELNDLLDEVGPRFHDWTGCAPFPVDADLLPGYVEGYRCPFRILPQGVKPCLSNTEMT 437
Query: 177 NLRKLAKSLPCHFSLGRNRNHQGLACAILKLWEKSLLAKIAIKRGIQNTNNKLMADEXXX 236
+R+LA++ P HF+LGR+R QGLA A++KLW KS +AKIAIKRG++NT N+ MA+E
Sbjct: 438 EMRRLARTSPPHFALGRSRELQGLAKAMVKLWAKSAIAKIAIKRGVENTRNERMAEELKR 497
Query: 237 XXXXXXXXRNKYYIVIYRGKDFVPTDVAAVLAERQ-ELTKQVQDVEEKVRCRAVDATSGQ 295
RNK YIV YRG DF+P VA L ERQ E+T+ +Q E++ R A +
Sbjct: 498 LTRGVLVSRNKEYIVFYRGNDFMPPAVAEALTERQKEITEVLQAKEDQAREMASTRATLT 557
Query: 296 GEATTPAGAAVLAERQELTEQVQDVEEKVHCRAVDATSGQGESTTPAGSLAEFYEAKARW 355
+A +P + AG+LAE A +RW
Sbjct: 558 SQAKSPKTQLL-----------------------------------AGTLAETIAASSRW 582
Query: 356 GRDISTEEREKMKEEVANAKTVKLVRHTEHKLSXXXXXXXXXXXXXXXXXXXMVPGGPDY 415
+ S+ + E++K E A+ K L+R E +L + P
Sbjct: 583 APNASSVDIEELKRESASIKRAALIRDLELRLLYGKQKLRRAERDLAKVQKDLDPSELPT 642
Query: 416 DQETITEEERVVFRRIGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLAF 475
D E ITEEER+++R+IGL M +L LG R V+DG IENMHLHWKHRELVK+I + K+L
Sbjct: 643 DSEIITEEERLLYRKIGLSMDPFLLLGRREVYDGTIENMHLHWKHRELVKVIVRGKSLPQ 702
Query: 476 VEDTARLLEYESGGILVAIERVSKGFALIYYRGKNYKRPITLRPRNLLTKQKALKRSIAM 535
V+ A LE ESGG+LV++++ KG+A+I YRGKNY+ P LRP NLLT++KA RSI +
Sbjct: 703 VKHIAISLEAESGGVLVSVDKTMKGYAIILYRGKNYQMPFRLRPSNLLTRKKAFARSIEL 762
Query: 536 QRHEALSQHITELEKNIDEMNKELGVSQDLEVQDKWSMEEED 577
QR EAL H+ +LE+ I+ + + G D+E ++K EEE+
Sbjct: 763 QRREALKYHVADLEERIELL--KTGQDDDMETRNKSDEEEEN 802
>AT3G23070.1 | Symbols: ATCFM3A, CFM3A | CRM family member 3A |
chr3:8203548-8207243 FORWARD LENGTH=881
Length = 881
Score = 411 bits (1057), Expect = e-115, Method: Compositional matrix adjust.
Identities = 234/562 (41%), Positives = 334/562 (59%), Gaps = 39/562 (6%)
Query: 1 MDKIHEKWRKEELVRLKFHEELARNMKIAHEIVERRTGGLVTWRSGSIMMVYRGINYQGP 60
+D I EKW+ E+VRLK A NM+ HEI+E++TGGLV WRSG+ + +YRG++Y+ P
Sbjct: 252 VDAIKEKWKSAEIVRLKIEGASALNMRKMHEILEKKTGGLVIWRSGTSISLYRGVSYELP 311
Query: 61 PS--TKELDEKEGDGFFIPDVSSGSLPSTKDSNAIANSSLEKSELAARNQEQPKNMTEEE 118
K+ E+ I + + K + LE+ + ++Q + E E
Sbjct: 312 SGKWNKQRREETPPEAVIENHDETTTMVDKSDEKVHLPQLEQETTSVEKKDQTSPVVEYE 371
Query: 119 AEYNALLDGLGPRFVEWWGTGVLPVDADLLPRTVPGYKTPFRLLPAGMRSRLTNAEMTNL 178
E + LLD LGPRF++W G LPVDADLLP +P Y+ PFR+LP G+RS L E T L
Sbjct: 372 DELDELLDDLGPRFMDWPGDNPLPVDADLLPGAIPDYEPPFRVLPYGVRSSLGPKEATAL 431
Query: 179 RKLAKSLPCHFSLGRNRNHQGLACAILKLWEKSLLAKIAIKRGIQNTNNKLMADEXXXXX 238
R+LA+S+P HF+LGR+R QGLA A+++LWEKS+LAKIAIKRG+Q+T ++ MA++
Sbjct: 432 RRLARSIPPHFALGRSRQLQGLATAMVRLWEKSMLAKIAIKRGVQSTTSERMAEDLKKLT 491
Query: 239 XXXXXXRNKYYIVIYRGKDFVPTDVAAVLAERQELTKQVQDVEEKVRCRAVDATSGQGEA 298
RNK ++V YRGK+F+ +VA L E++ + +QD EE+ R R A +
Sbjct: 492 GGIMLSRNKDFLVFYRGKNFLSREVADALVEQERFVRTLQDEEEQARLRGSSALIVP--S 549
Query: 299 TTPAGAAVLAERQELTEQVQDVEEKVHCRAVDATSGQGESTTPAGSLAEFYEAKARWGRD 358
T PA V AG+L E +A +WG++
Sbjct: 550 TEPANKLV----------------------------------SAGTLGETLDATGKWGKN 575
Query: 359 ISTEER-EKMKEEVANAKTVKLVRHTEHKLSXXXXXXXXXXXXXXXXXXXMVPGGPDYDQ 417
+ ++ +++K+EV + LVR E KL+ + P D
Sbjct: 576 LDDDDHSDEVKQEVEILRHENLVRKLERKLAFAERKLLKAERGLAKVEVCLKPAEQREDP 635
Query: 418 ETITEEERVVFRRIGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLAFVE 477
E+IT+EER +FR++GL+MKA+L LG RGVFDG +ENMHLHWK+RELVK+I K KT V+
Sbjct: 636 ESITDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGVK 695
Query: 478 DTARLLEYESGGILVAIERVSKGFALIYYRGKNYKRPITLRPRNLLTKQKALKRSIAMQR 537
A LE ESGGILV+I++V+KG+A+I YRG++YKRP LRP+NLLTK+KAL RSI +QR
Sbjct: 696 KVALALEAESGGILVSIDKVTKGYAIIVYRGQDYKRPTMLRPKNLLTKRKALARSIELQR 755
Query: 538 HEALSQHITELEKNIDEMNKEL 559
E L +HI+ ++ ++ E+
Sbjct: 756 REGLLKHISTMQAKAKQLRAEI 777
>AT3G01370.1 | Symbols: ATCFM2, CFM2 | CRM family member 2 |
chr3:139033-143477 FORWARD LENGTH=1011
Length = 1011
Score = 407 bits (1045), Expect = e-113, Method: Compositional matrix adjust.
Identities = 245/590 (41%), Positives = 343/590 (58%), Gaps = 75/590 (12%)
Query: 1 MDKIHEKWRKEELVRLKFHEELAR-NMKIAHEIVERRTGGLVTWRSGSIMMVYRGINYQG 59
++ IHE+WR E+V++ F E+++R NMK H+++E +TGGLV WRSGS +++YRG+NYQ
Sbjct: 197 VNGIHERWRTTEVVKI-FCEDISRMNMKRTHDVLETKTGGLVIWRSGSKILLYRGVNYQY 255
Query: 60 P--PSTKELDEKEGDGFFIPD-----------VSSGSLPSTKDSNAIANSSLEK---SEL 103
P S ++L + G D ++ S PS +N + L + S
Sbjct: 256 PYFVSDRDLAHEAASGASSMDQGVVDSREKQSIAESSAPSI--TNKMVKPMLTQGVGSPD 313
Query: 104 AARNQEQPKNMTEEEAEYNALLDGLGPRFVEWWGTGVLPVDADLLPRTVPGYKTPFRLLP 163
R Q + EEA+ LL+GLGPRF +WW LPVD DLLP VP Y+ PFRLLP
Sbjct: 314 KVRFQLPGEVQLVEEADR--LLEGLGPRFTDWWAYDPLPVDGDLLPAVVPDYRRPFRLLP 371
Query: 164 AGMRSRLTNAEMTNLRKLAKSLPCHFSLGRNRNHQGLACAILKLWEKSLLAKIAIKRGIQ 223
G+ +LT+ EMT +R+L + LPCHF+LGRNRN QGLA AI+KLWEK LAKIA+KRG+Q
Sbjct: 372 YGVSPKLTDDEMTTIRRLGRPLPCHFALGRNRNLQGLAVAIVKLWEKCELAKIAVKRGVQ 431
Query: 224 NTNNKLMADEXXXXXXXXXXXRNKYYIVIYRGKDFVPTDVAAVLAERQELTKQVQDVEEK 283
NTN++LMA+E R+K +IV+YRGKDF+P+ V++ + ER+ T +++
Sbjct: 432 NTNSELMAEELKWLTGGTLISRDKDFIVLYRGKDFLPSAVSSAIEERRRQTMIMEN---- 487
Query: 284 VRCRAVDATSGQGEATTPAGAAVLAERQELTEQVQDVEEKVHCRAVDATSGQGESTTPAG 343
+S G +LTE EE++ RAV
Sbjct: 488 --------SSVHG--------------NKLTEN----EEEIKPRAVK------------- 508
Query: 344 SLAEFYEAKARWGRD-ISTEEREKMKEEVANAKTVKLVRHTEHKLSXXXXXXXXXXXXXX 402
E E +A+ +D I T + MK N+ ++ T KLS
Sbjct: 509 ---EDIELEAKDQKDHIQTHQ---MKSRQRNSPEA-ILEKTSMKLSMALEKKANAEKVLA 561
Query: 403 XXXXXMVPGGPDYDQETITEEERVVFRRIGLRMKAYLPLGIRGVFDGVIENMHLHWKHRE 462
P D D+E IT +E+ + R+IGL+MK +L LG RGVFDG IENMHLHWK+RE
Sbjct: 562 DLENRESPQLSDIDKEGITNDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRE 621
Query: 463 LVKLISKQKTLAFVEDTARLLEYESGGILVAIERVSKGFALIYYRGKNYKRPITLRPRNL 522
LVK+I + ++ A +LE ESGGILVA+E VSKG+A+I YRGKNY+RP LRP+ L
Sbjct: 622 LVKIICNEYSIEAAHKVAEILEAESGGILVAVEMVSKGYAIIVYRGKNYERPQCLRPQTL 681
Query: 523 LTKQKALKRSIAMQRHEALSQHITELEKNIDEMNKELGVSQDLEVQDKWS 572
L+K++ALKRS+ QR ++L H+ +L NI+E+N++L +D + WS
Sbjct: 682 LSKREALKRSVEAQRRKSLKLHVLKLSNNIEELNRQL--VEDSATNETWS 729
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 413 PDYDQETITEEERVVFRRIGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKT 472
P + T+ E R +G+R+ L +G G+ +G++ +H W+ E+VK+ + +
Sbjct: 159 PSLAELTLPPAELRRLRTVGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDIS 218
Query: 473 LAFVEDTARLLEYESGGILVAIERVSKGFALIYYRGKNYKRPITLRPRNL 522
++ T +LE ++GG+++ G ++ YRG NY+ P + R+L
Sbjct: 219 RMNMKRTHDVLETKTGGLVIW----RSGSKILLYRGVNYQYPYFVSDRDL 264
>AT5G16180.1 | Symbols: CRS1, ATCRS1 | ortholog of maize chloroplast
splicing factor CRS1 | chr5:5279884-5282898 FORWARD
LENGTH=720
Length = 720
Score = 338 bits (868), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 214/569 (37%), Positives = 293/569 (51%), Gaps = 94/569 (16%)
Query: 1 MDKIHEKWRKEELVRLKFHEELARNMKIAHEIVERRTGGLVTWRSGSIMMVYRGINYQGP 60
++KI W+ EL ++F L RNM+ A EI+E +TGGLV ++VYRG GP
Sbjct: 238 VNKIKSMWKLNELAMVRFDVPLCRNMERAQEIIEMKTGGLVVLSKKEFLVVYRG----GP 293
Query: 61 PSTKELDEKEGDGFFIPDVSSGSLPSTKDSNAIANSSLEKSELAARNQEQPKNMTEEEAE 120
S++ + I++S E+ E
Sbjct: 294 SY-----------------------SSEGQDEISSSLYER-------------------E 311
Query: 121 YNALLDGLGPRFVEWWGTGVLPVDADLLPRTVPGYKTPFRLLPAGMRSRLTNAEMTNLRK 180
+ LLDGLGPR+++WW PVDADLLP V GY TP R P R++LT+ E+T LR
Sbjct: 312 ADRLLDGLGPRYMDWWMRRPFPVDADLLPEVVNGYMTPSRRCPPNTRAKLTDEELTYLRN 371
Query: 181 LAKSLPCHFSLGRNRNHQGLACAILKLWEKSLLAKIAIKRGIQNTNNKLMADEXXXXXXX 240
+A+ LP HF LGRN QGLA AI+KLWEK ++AKIAIK G NTNN+ MADE
Sbjct: 372 IAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEEMADELRYLTGG 431
Query: 241 XXXXRNKYYIVIYRGKDFVPTDVAAVLAERQELTKQVQDVEEKVRCRAVDATSGQGEATT 300
RNKY IV+YRGKDF+ +VA ++ +R+ L + Q EE R
Sbjct: 432 VLILRNKYLIVLYRGKDFLSDEVADLVEDRERLLSRYQHFEETKR--------------- 476
Query: 301 PAGAAVLAERQELTEQVQDVEEKVHCRAVDATSGQGESTTPAGSLAEFYEAKARWG---- 356
E + V Q + T +G+L EF E + ++G
Sbjct: 477 --------------------ESDIELLEVVTNGKQLKETNKSGTLLEFQELQRKFGEMDP 516
Query: 357 RDISTEEREKMKEEVANAKTVKLVRHTEHKLSXXXXXXXXXXXXXXXXXXXMVPGGPDYD 416
R++ T E A+ K ++ EHKLS P D D
Sbjct: 517 RNLET--------EAEKARLEKELKSQEHKLSILKSKIEKSNMELFKLNSLWKPSEGDDD 568
Query: 417 QETITEEERVVFRRIGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLAFV 476
E +T EER RRIGL+M + L LG RGVF GV+E +H HWKHRE+ K+I+ QK + V
Sbjct: 569 IEILTNEERECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQKLFSRV 628
Query: 477 EDTARLLEYESGGILVAIERVSKGFALIYYRGKNYKRPIT-LRPRNLLTKQKALKRSIAM 535
TA+ LE ES G+L++IE++ +G A++ YRGKNYKRP + L +NLLTK+KAL+RS+ M
Sbjct: 629 VYTAKALETESNGVLISIEKLKEGHAILIYRGKNYKRPSSKLMAQNLLTKRKALQRSVVM 688
Query: 536 QRHEALSQHITELEKNIDEMNKELGVSQD 564
QR +L + E+ I+++ L QD
Sbjct: 689 QRLGSLKFFAYQRERAIEDLKVSLVNLQD 717
>AT3G25440.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain
protein | chr3:9223998-9225505 FORWARD LENGTH=444
Length = 444
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 97/170 (57%), Gaps = 8/170 (4%)
Query: 415 YDQETITEEERVVFRRIGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLA 474
+D E +T EE + ++GL+ K Y+P+G RG++ GVI NMHLHWK + ++++ K T
Sbjct: 172 HDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPD 231
Query: 475 FVEDTARLLEYESGGILVAIERVSKGFALIYYRGKNYKRPIT--LRPRNLLTKQKALKRS 532
V++ A L +GGI++ V +G +I YRGKNY +P T + PR L ++KAL +S
Sbjct: 232 EVKEIAVELARLTGGIVLD---VHEGNTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKS 288
Query: 533 IAMQRHEALSQHITELEKNIDEMNKELGVSQD---LEVQDKWSMEEEDKK 579
A+ ++I LE+ + + + +D ++V D EE KK
Sbjct: 289 KCRDALRAVRKYIPRLEQELQLLQAQAETKRDYTNVKVDDNQERSEELKK 338
>AT3G25440.2 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain
protein | chr3:9224294-9225505 FORWARD LENGTH=380
Length = 380
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 97/170 (57%), Gaps = 8/170 (4%)
Query: 415 YDQETITEEERVVFRRIGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLA 474
+D E +T EE + ++GL+ K Y+P+G RG++ GVI NMHLHWK + ++++ K T
Sbjct: 108 HDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPD 167
Query: 475 FVEDTARLLEYESGGILVAIERVSKGFALIYYRGKNYKRPIT--LRPRNLLTKQKALKRS 532
V++ A L +GGI++ V +G +I YRGKNY +P T + PR L ++KAL +S
Sbjct: 168 EVKEIAVELARLTGGIVLD---VHEGNTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKS 224
Query: 533 IAMQRHEALSQHITELEKNIDEMNKELGVSQD---LEVQDKWSMEEEDKK 579
A+ ++I LE+ + + + +D ++V D EE KK
Sbjct: 225 KCRDALRAVRKYIPRLEQELQLLQAQAETKRDYTNVKVDDNQERSEELKK 274
>AT2G28480.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain
protein | chr2:12176642-12178031 REVERSE LENGTH=372
Length = 372
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 412 GPDYDQETITEEERVVFRRIGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQK 471
GP+ IT EER +++G + Y+P+G RGVF GVI NMHLHWK E VK+I
Sbjct: 156 GPEVRPHEITGEERFYLKKMGQKRSNYVPIGRRGVFGGVILNMHLHWKKHETVKVICNNS 215
Query: 472 TLAFVEDTARLLEYESGGILVAIERVSKGFALIYYRGKNYKRPITLRPRNLLTKQKALKR 531
V+ A L SGG+ V I +I+YRGK Y +P + P + L+K++A ++
Sbjct: 216 KPGQVQQYAEELAKLSGGVPVNI---IGDDTIIFYRGKGYVQPQVMSPIDTLSKKRAYEK 272
Query: 532 SIAMQRHEALSQHITELEKNIDEMNKELGVSQDLEVQDKWSM 573
S Q E++ I EK ++ + + + D ++ S+
Sbjct: 273 SKYEQSLESVRHFIAIAEKELELYYRHVALYDDPNNRNPLSI 314
>AT4G13070.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain
protein | chr4:7621780-7623051 REVERSE LENGTH=343
Length = 343
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 83/147 (56%), Gaps = 18/147 (12%)
Query: 409 VPGGP--DYDQETITEEERVVFRRIGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKL 466
VP P YD E++TEEE+ +R G + K ++ +G RGVF GV+ N+HLHWK E VK+
Sbjct: 169 VPKSPAEPYDPESLTEEEQHYLKRTGEKRKNFVLVGRRGVFGGVVLNLHLHWKKHETVKV 228
Query: 467 ISKQ-----KTLAFVEDTARLLEYESGGILVAIERVSKGFALIYYRGKNYKRPITLRPRN 521
I K + + E+ ARL S GI++ V ++ YRGKNY RP + P +
Sbjct: 229 ICKPCNKPGQVHEYAEELARL----SKGIVID---VKPNNTIVLYRGKNYVRPEVMSPVD 281
Query: 522 LLTKQKALKRSIAMQRHEALSQHITEL 548
L+K KAL++ R+E +H +E
Sbjct: 282 TLSKDKALEK----YRYEQSLEHTSEF 304
>AT3G27550.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain
protein | chr3:10208010-10209899 REVERSE LENGTH=491
Length = 491
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 86/144 (59%), Gaps = 3/144 (2%)
Query: 412 GPDYDQETITEEERVVFRRIGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQK 471
P +D E T E+ F++IG + K Y+P+G+RGVF GV++NMH+HWK E V++
Sbjct: 84 SPVHDPELFTSEQVQAFKKIGFKNKNYVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNF 143
Query: 472 TLAFVEDTARLLEYESGGILVAIERVSKGFALIYYRGKNYKRPITLRPRNLLTKQKALKR 531
+++ A ++ SGG+++ I V +I +RG+NY++P L P N LTK+KAL +
Sbjct: 144 PKEKIKEMASMIARLSGGVVINIHNVK---TIIMFRGRNYRQPKNLIPVNTLTKRKALFK 200
Query: 532 SIAMQRHEALSQHITELEKNIDEM 555
+ Q E+ +I + E+ + M
Sbjct: 201 ARFEQALESQKLNIKKTEQQLRRM 224