Miyakogusa Predicted Gene

Lj2g3v0720150.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0720150.1 tr|Q9LS60|Q9LS60_ARATH Gb|AAF26481.1
OS=Arabidopsis thaliana GN=At3g18300 PE=2
SV=1,34.15,5e-19,seg,NULL,CUFF.35266.1
         (239 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G18300.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    66   2e-11
AT1G48780.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    65   4e-11
AT1G67050.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    63   2e-10

>AT3G18300.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G48780.1); Has 69 Blast hits to 69 proteins in
           7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr3:6283396-6284220 FORWARD
           LENGTH=274
          Length = 274

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 85/187 (45%), Gaps = 26/187 (13%)

Query: 2   LMCSETSPPRLSFSHDLSEL-QVLPLIQDVH---FRDTLLLDSNPXXXX--XXXXXXXXX 55
           ++C+E++  R SF+ DL +  +  P+ Q       RDT LLDS+                
Sbjct: 1   MICTESNHQRFSFAGDLGQSDKGTPMEQQPSGPVRRDTTLLDSSNSDFEFHISSNFDPGD 60

Query: 56  XXXADELFSNGVILPT-QIQDNKTTT-PKHSHHVE--------XXXXXXXXXXXXXVDKV 105
              ADE+F++G+ILP    Q   T+T PK  +  E                      +  
Sbjct: 61  SSPADEIFADGMILPVLPFQVTATSTMPKRLYKYELPPIVSAPTLSSYLPPLPLPLPEHS 120

Query: 106 KKETIRELMIDVSANG---------ERKKSSFWGFSRSKSLNCDDTKKIMVCPLPLLSRS 156
           +K +++E    ++  G         E+   SFW F RS SLNC D KK ++C  P L+RS
Sbjct: 121 RKYSVKETRGSLNGRGSGANSDSEAEKSSKSFWSFKRSSSLNC-DIKKSLICSFPRLTRS 179

Query: 157 NSMGSVA 163
           NS GSVA
Sbjct: 180 NSTGSVA 186


>AT1G48780.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT3G18300.1); Has 89 Blast hits to 89 proteins in
           11 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi
           - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 1
           (source: NCBI BLink). | chr1:18041989-18042744 FORWARD
           LENGTH=251
          Length = 251

 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 98/248 (39%), Gaps = 33/248 (13%)

Query: 2   LMCSETSPPRLSFSHDL--SELQVLPLIQDVHF--RDTLLLDSNPXXXXXXXXXXXX--X 55
           ++C+E +  R+SFS DL  S+    P+I+      RD  LLDS+                
Sbjct: 1   MICTE-ALQRISFSSDLGQSDKAPPPVIEPSGLIRRDETLLDSSNSDFEFHISNSFDPGD 59

Query: 56  XXXADELFSNGVILPTQIQDNKTTTPKHSHHVE------XXXXXXXXXXXXXVDKVKKET 109
              ADE+F++G+ILP  +    +T PK  +  E                       +KET
Sbjct: 60  SSPADEIFADGMILPFHVT-AASTVPKRLYKYELPPITSSLSPSPLSPQPLPTKHSEKET 118

Query: 110 I-RELMIDVSANGERKKSSFWGFSRSKSLNCDDTKKIMVCPLPLLSRSNSMGSVAXXXXX 168
             R    +  +  E+   SFW F RS SLNC D KK ++C  P L+RSNS GSV      
Sbjct: 119 NGRASGANSDSEAEKSSKSFWSFKRSSSLNC-DIKKSLICSFPRLTRSNSTGSVTNSKRA 177

Query: 169 XXXX------XXXXXXXXXXXXXXXXXXGKTYGGSFGNGHWVSPVLNVPTPCVSKGSSNL 222
                                       GK   G  G    V PVLN P+          
Sbjct: 178 MLRDVNNHRPSSRSSCCNAYQFRPQKHTGKK--GEGGGSFSVIPVLNGPS---------T 226

Query: 223 FGLGSFLR 230
           FGLGS LR
Sbjct: 227 FGLGSILR 234


>AT1G67050.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G38320.1); Has 617 Blast hits to 318 proteins
           in 80 species: Archae - 0; Bacteria - 16; Metazoa - 141;
           Fungi - 62; Plants - 128; Viruses - 2; Other Eukaryotes
           - 268 (source: NCBI BLink). | chr1:25028862-25029656
           REVERSE LENGTH=264
          Length = 264

 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 49/102 (48%), Gaps = 4/102 (3%)

Query: 59  ADELFSNGVILPTQIQDNKTTTPKHSHHVEXXXXXXXXXXXXXVDKVKKETIRELMIDVS 118
           ADELFSNG ILPT+I+       K                     K   E  +E  + ++
Sbjct: 72  ADELFSNGKILPTEIKKKPEPGKKEPEPKPVKSKPDSRKQR----KQPNEEQQEDDVIIT 127

Query: 119 ANGERKKSSFWGFSRSKSLNCDDTKKIMVCPLPLLSRSNSMG 160
              +    SFWGF RS SLNC  T    +CPLPLL+RSNS G
Sbjct: 128 TEEKTNTKSFWGFKRSSSLNCGSTYGRSLCPLPLLNRSNSTG 169