Miyakogusa Predicted Gene

Lj2g3v0694770.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0694770.1 tr|Q9LJQ6|Q9LJQ6_ARATH AT3G18240 protein
OS=Arabidopsis thaliana GN=AT3g18240/MIE15_3 PE=2
SV=1,38.4,0.000000000005,seg,NULL,CUFF.35242.1
         (119 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G21460.1 | Symbols:  | Ribosomal protein S24/S35, mitochondri...    60   4e-10
AT3G18240.2 | Symbols:  | Ribosomal protein S24/S35, mitochondri...    58   1e-09
AT3G18240.1 | Symbols:  | Ribosomal protein S24/S35, mitochondri...    58   1e-09
AT1G73770.2 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    46   4e-06
AT1G73770.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    46   4e-06

>AT4G21460.1 | Symbols:  | Ribosomal protein S24/S35, mitochondrial
           | chr4:11428530-11430390 FORWARD LENGTH=415
          Length = 415

 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 42/54 (77%), Gaps = 1/54 (1%)

Query: 60  LVVEEISNEELKSRVAR-LQEGDEDAIPSLFEAIMQRYLTDKPIEADPELMKEI 112
           LVVE++SN+ELKSR+ +   EG+EDA+P + EA++QR L DK  E D ELM++I
Sbjct: 68  LVVEDVSNKELKSRIDKSFNEGNEDALPGVIEALLQRRLVDKHAETDDELMEKI 121


>AT3G18240.2 | Symbols:  | Ribosomal protein S24/S35, mitochondrial
           | chr3:6255810-6257695 FORWARD LENGTH=419
          Length = 419

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 42/54 (77%), Gaps = 1/54 (1%)

Query: 60  LVVEEISNEELKSRVAR-LQEGDEDAIPSLFEAIMQRYLTDKPIEADPELMKEI 112
           LVVE++SN+ELKSR+ +   EG+EDA+P + EA++QR L DK  E D EL+++I
Sbjct: 72  LVVEDVSNKELKSRIEKYFNEGNEDALPGVIEALLQRRLVDKHAETDDELLEKI 125


>AT3G18240.1 | Symbols:  | Ribosomal protein S24/S35, mitochondrial
           | chr3:6255810-6257695 FORWARD LENGTH=419
          Length = 419

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 42/54 (77%), Gaps = 1/54 (1%)

Query: 60  LVVEEISNEELKSRVAR-LQEGDEDAIPSLFEAIMQRYLTDKPIEADPELMKEI 112
           LVVE++SN+ELKSR+ +   EG+EDA+P + EA++QR L DK  E D EL+++I
Sbjct: 72  LVVEDVSNKELKSRIEKYFNEGNEDALPGVIEALLQRRLVDKHAETDDELLEKI 125


>AT1G73770.2 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           mitochondrion; EXPRESSED IN: cultured cell; BEST
           Arabidopsis thaliana protein match is: Ribosomal protein
           S24/S35, mitochondrial (TAIR:AT3G18240.2); Has 35333
           Blast hits to 34131 proteins in 2444 species: Archae -
           798; Bacteria - 22429; Metazoa - 974; Fungi - 991;
           Plants - 531; Viruses - 0; Other Eukaryotes - 9610
           (source: NCBI BLink). | chr1:27742215-27742956 FORWARD
           LENGTH=191
          Length = 191

 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 36/51 (70%), Gaps = 1/51 (1%)

Query: 63  EEISNEELKSRV-ARLQEGDEDAIPSLFEAIMQRYLTDKPIEADPELMKEI 112
           E +S EELK R+ + L +G+EDAIP LFEA+M R L+ K  ++D E+M  +
Sbjct: 62  EVLSKEELKKRIQSFLDDGNEDAIPDLFEALMIRKLSGKHDDSDDEVMDVV 112


>AT1G73770.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           mitochondrion; EXPRESSED IN: cultured cell; BEST
           Arabidopsis thaliana protein match is: Ribosomal protein
           S24/S35, mitochondrial (TAIR:AT3G18240.2); Has 951 Blast
           hits to 569 proteins in 87 species: Archae - 0; Bacteria
           - 746; Metazoa - 33; Fungi - 46; Plants - 57; Viruses -
           0; Other Eukaryotes - 69 (source: NCBI BLink). |
           chr1:27742215-27742956 FORWARD LENGTH=191
          Length = 191

 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 36/51 (70%), Gaps = 1/51 (1%)

Query: 63  EEISNEELKSRV-ARLQEGDEDAIPSLFEAIMQRYLTDKPIEADPELMKEI 112
           E +S EELK R+ + L +G+EDAIP LFEA+M R L+ K  ++D E+M  +
Sbjct: 62  EVLSKEELKKRIQSFLDDGNEDAIPDLFEALMIRKLSGKHDDSDDEVMDVV 112