Miyakogusa Predicted Gene

Lj2g3v0677940.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0677940.1 Non Chatacterized Hit- tr|I3S416|I3S416_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,97.06,0.0000000005, ,NODE_97508_length_331_cov_10.746223.path1.1
         (34 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G73650.2 | Symbols:  | Protein of unknown function (DUF1295) ...    58   1e-09
AT1G73650.3 | Symbols:  | Protein of unknown function (DUF1295) ...    57   2e-09
AT1G18180.1 | Symbols:  | Protein of unknown function (DUF1295) ...    54   1e-08

>AT1G73650.2 | Symbols:  | Protein of unknown function (DUF1295) |
          chr1:27688549-27690165 REVERSE LENGTH=291
          Length = 291

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/34 (79%), Positives = 31/34 (91%)

Query: 1  MGTVIDSHFLGLTAIVTIGYQFLFFIITALLKFD 34
          MGTV+DSHFL LTAIVT+ YQF+FF+ITAL KFD
Sbjct: 1  MGTVLDSHFLALTAIVTVIYQFIFFVITALFKFD 34


>AT1G73650.3 | Symbols:  | Protein of unknown function (DUF1295) |
          chr1:27688409-27690165 REVERSE LENGTH=302
          Length = 302

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/34 (79%), Positives = 31/34 (91%)

Query: 1  MGTVIDSHFLGLTAIVTIGYQFLFFIITALLKFD 34
          MGTV+DSHFL LTAIVT+ YQF+FF+ITAL KFD
Sbjct: 1  MGTVLDSHFLALTAIVTVIYQFIFFVITALFKFD 34


>AT1G18180.1 | Symbols:  | Protein of unknown function (DUF1295) |
          chr1:6255903-6257737 FORWARD LENGTH=305
          Length = 305

 Score = 54.3 bits (129), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/34 (73%), Positives = 30/34 (88%)

Query: 1  MGTVIDSHFLGLTAIVTIGYQFLFFIITALLKFD 34
          M  VIDSH+L +TAIVT+GYQF+FF+ITAL KFD
Sbjct: 1  MVKVIDSHYLAITAIVTVGYQFIFFVITALFKFD 34