Miyakogusa Predicted Gene

Lj2g3v0676900.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0676900.1 tr|B9IEB1|B9IEB1_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_1101000 PE=4
SV=1,42.95,5e-17,seg,NULL; coiled-coil,NULL;
GOLGIN-84,NULL,gene.g39758.t1.1
         (495 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G18190.1 | Symbols: GC2 | golgin candidate 2 | chr1:6257963-6...   162   4e-40

>AT1G18190.1 | Symbols: GC2 | golgin candidate 2 |
           chr1:6257963-6261325 REVERSE LENGTH=668
          Length = 668

 Score =  162 bits (411), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 89/153 (58%), Positives = 115/153 (75%), Gaps = 1/153 (0%)

Query: 343 MVAKLEGEKQSLEKILEERAYQQAQEASQLQNTTMETMEAVELEKQKHNNTRMEVLARLA 402
           MVA+LEGEK SLEKI+EERA QQAQEA++LQ   MET+EA +LEKQKHNNTRMEVL RLA
Sbjct: 339 MVARLEGEKLSLEKIVEERAKQQAQEAAELQTNMMETLEAADLEKQKHNNTRMEVLTRLA 398

Query: 403 KLETVNADLARSLAAVQCNLEVEVKQVAELRQKIVSKEFVHEELRRSMRNPRQTGAS-RN 461
            LE  NA+L RSLAA Q  LE ++ QVA L+Q++  KE   EEL+R+  N    G + + 
Sbjct: 399 GLEAENAELTRSLAAGQKKLETQIDQVAVLKQQVELKESTLEELKRNTFNIGGRGTTLKQ 458

Query: 462 LLASKGVEFEREILEAELSLINDKVSQLQEKVS 494
           L  S+G +FE ++LEAE+SL+ DK+ +LQ+K +
Sbjct: 459 LDTSRGDKFEHQMLEAEISLLTDKIGRLQDKAT 491



 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 76/149 (51%), Gaps = 33/149 (22%)

Query: 46  QIDQQAAESLRKNEKLRSDELGIHDAPAAKSGSV-VSLKNQLKKKPSENND-----YHGK 99
           Q+DQQAA+SLRK+EK  + +     +P  KSGS  VSLK+QL+KK  E +D         
Sbjct: 18  QLDQQAADSLRKDEKSETHDEVFETSP--KSGSSPVSLKDQLRKKTYEGSDSGSGSQRNS 75

Query: 100 LHSDPNF----------------TTAPKSSPT---PTLADADWTQLLSSPTHSIASASGG 140
               P++                T+AP  S T     L D DWT+LLS+P    ++++  
Sbjct: 76  TEQKPSYLSSSKKVRKPDQSHERTSAPSQSLTQDNTKLTDNDWTELLSTPNQRTSTSTSR 135

Query: 141 DHG--NGARGFNKNGRKHKDL----LLSD 163
             G  +  RG  K+G++H +L    L+SD
Sbjct: 136 SPGGTSAIRGLKKDGKRHGNLGKNPLVSD 164