Miyakogusa Predicted Gene

Lj2g3v0663770.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0663770.2 Non Chatacterized Hit- tr|I1KJ56|I1KJ56_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.38468 PE,92.22,0,Nop
domain,NULL; NOSIC (NUC001) domain,NOSIC; NOSIC,NOSIC; NOP5NT,NOP5,
N-terminal; NUCLEOLAR PROTEI,CUFF.35191.2
         (271 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G56110.1 | Symbols: NOP56 | homolog of nucleolar protein NOP5...   434   e-122
AT3G12860.1 | Symbols:  | NOP56-like pre RNA processing ribonucl...   430   e-121
AT3G05060.1 | Symbols:  | NOP56-like pre RNA processing ribonucl...   172   2e-43
AT5G27120.1 | Symbols:  | NOP56-like pre RNA processing ribonucl...   170   1e-42
AT5G27140.1 | Symbols:  | NOP56-like pre RNA processing ribonucl...   107   6e-24

>AT1G56110.1 | Symbols: NOP56 | homolog of nucleolar protein NOP56 |
           chr1:20984544-20986893 REVERSE LENGTH=522
          Length = 522

 Score =  434 bits (1117), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 203/270 (75%), Positives = 240/270 (88%)

Query: 1   MALFLLYESASGYALLEAHGVDEIGQNTEAVRNSVSDLNRFGKVVKLRSFNPFTSALDAL 60
           MA++++YES+SGY L E HG+DEIGQNTEAVR SVSDL+RFG+VV+L +F+PF SALDAL
Sbjct: 1   MAMYVIYESSSGYGLFEVHGLDEIGQNTEAVRTSVSDLSRFGRVVQLTAFHPFESALDAL 60

Query: 61  KQCNAVSEGLLTDELRTVLETNLPKVKEGKKSKFSLGVSDPKIGSQISEVTKIPCQCNEF 120
            Q NAVSEG++TDELR+ LE NLPKVKEGKK KFSLG+++PK+GS I E TKIPCQ NEF
Sbjct: 61  NQVNAVSEGVMTDELRSFLELNLPKVKEGKKPKFSLGLAEPKLGSHIFEATKIPCQSNEF 120

Query: 121 VSELLRGVRLHFDRFVNDLKAGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDT 180
           V ELLRGVR HFDRF+ DLK GDLEK+QLGL HSYSRAKVKFNVNRVDNMVIQAIF+LDT
Sbjct: 121 VLELLRGVRQHFDRFIKDLKPGDLEKSQLGLAHSYSRAKVKFNVNRVDNMVIQAIFMLDT 180

Query: 181 LDKDVNSFSMRVREWYSWHFPELVKIVNDNYLYAKVAKFIEDKSKLSEDNISDLTDIVGD 240
           LDKD+NSF+MRVREWYSWHFPELVKIVNDNYLYA+V+K I+DKSKL+ED+I  LT+++GD
Sbjct: 181 LDKDINSFAMRVREWYSWHFPELVKIVNDNYLYARVSKMIDDKSKLTEDHIPMLTEVLGD 240

Query: 241 EDKAKEIVEAAKASMGRFLNLVLLLIVISF 270
           EDKAKE++EA KASMG  L+ + L+ V +F
Sbjct: 241 EDKAKEVIEAGKASMGSDLSPLDLINVQTF 270


>AT3G12860.1 | Symbols:  | NOP56-like pre RNA processing
           ribonucleoprotein | chr3:4091678-4093921 FORWARD
           LENGTH=499
          Length = 499

 Score =  430 bits (1105), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/270 (76%), Positives = 235/270 (87%)

Query: 1   MALFLLYESASGYALLEAHGVDEIGQNTEAVRNSVSDLNRFGKVVKLRSFNPFTSALDAL 60
           M ++LL ES SGY L E HG DEIGQNTEAVR+SVSDL+RFG+VV+L +F+PF SALDAL
Sbjct: 1   MKIYLLSESPSGYGLFEGHGSDEIGQNTEAVRSSVSDLSRFGRVVQLTAFHPFQSALDAL 60

Query: 61  KQCNAVSEGLLTDELRTVLETNLPKVKEGKKSKFSLGVSDPKIGSQISEVTKIPCQCNEF 120
            Q NAVSEG ++DELR+ LE NLPKVKEGKK KFSLGVS+PKIGS I E TKIPCQ NEF
Sbjct: 61  NQINAVSEGYMSDELRSFLELNLPKVKEGKKPKFSLGVSEPKIGSCIFEATKIPCQSNEF 120

Query: 121 VSELLRGVRLHFDRFVNDLKAGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDT 180
           V ELLRGVR HFDRF+ DLK GDLEKAQLGL HSYSRAKVKFNVNRVDNMVIQAIF+LDT
Sbjct: 121 VHELLRGVRQHFDRFIKDLKPGDLEKAQLGLAHSYSRAKVKFNVNRVDNMVIQAIFMLDT 180

Query: 181 LDKDVNSFSMRVREWYSWHFPELVKIVNDNYLYAKVAKFIEDKSKLSEDNISDLTDIVGD 240
           LDKD+NSF+MRVREWYSWHFPELVKIVNDNYLYAKV+K I DKSKLSE++I  LT+ +GD
Sbjct: 181 LDKDINSFAMRVREWYSWHFPELVKIVNDNYLYAKVSKIIVDKSKLSEEHIPMLTEALGD 240

Query: 241 EDKAKEIVEAAKASMGRFLNLVLLLIVISF 270
           EDKA+E++EA KASMG+ L+ V L+ V +F
Sbjct: 241 EDKAREVIEAGKASMGQDLSPVDLINVQTF 270


>AT3G05060.1 | Symbols:  | NOP56-like pre RNA processing
           ribonucleoprotein | chr3:1413174-1415564 REVERSE
           LENGTH=533
          Length = 533

 Score =  172 bits (437), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 102/254 (40%), Positives = 154/254 (60%), Gaps = 13/254 (5%)

Query: 3   LFLLYESASGYALLEAHGVDEIGQNTEAVRNSVSDLNRFGKVVKLRSFNPFTSALDALKQ 62
           + +LYE+A+G+AL +     ++  N E +       +   K+VKL++F  F +  +AL+ 
Sbjct: 2   VLVLYETAAGFALFKVKDEGKMA-NVEDLCKEFDTPDSARKMVKLKAFEKFDNTSEALEA 60

Query: 63  CNAVSEGLLTDELRTVLETNLPKVKEGKKSKFSLGVSDPKIGSQISEVTKIPCQCNEFVS 122
              + EG  +  LR  L+ N     +G+    +L V+D K+G+ I E  KI C  N  V 
Sbjct: 61  VAKLLEGAPSKGLRKFLKANC----QGE----TLAVADSKLGNVIKEKLKIDCIHNNAVM 112

Query: 123 ELLRGVRLHFDRFVNDLKAGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLD 182
           ELLRGVR  F   ++ L   DL    LGL HS +R K+KF+ ++VD M+IQAI LLD LD
Sbjct: 113 ELLRGVRSQFTELISGLGDQDLAPMSLGLSHSLARYKLKFSSDKVDTMIIQAIGLLDDLD 172

Query: 183 KDVNSFSMRVREWYSWHFPELVKIVNDNYLYAKVAKFIEDKSKLSEDNISDLTDIVGDED 242
           K++N+++MRVREWY WHFPEL KI++DN LYAK  K + ++   ++    D ++I+ DE 
Sbjct: 173 KELNTYAMRVREWYGWHFPELAKIISDNILYAKSVKLMGNRVNAAK---LDFSEILADEI 229

Query: 243 KAKEIVEAAKASMG 256
           +A ++ +AA  SMG
Sbjct: 230 EA-DLKDAAVISMG 242


>AT5G27120.1 | Symbols:  | NOP56-like pre RNA processing
           ribonucleoprotein | chr5:9541287-9543684 FORWARD
           LENGTH=533
          Length = 533

 Score =  170 bits (430), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 102/254 (40%), Positives = 150/254 (59%), Gaps = 13/254 (5%)

Query: 3   LFLLYESASGYALLEAHGVDEIGQNTEAVRNSVSDLNRFGKVVKLRSFNPFTSALDALKQ 62
           + +L+E+  G+A+ +     ++  N E + N  S      K+VKL +F+ F +  +AL+ 
Sbjct: 1   MLILFETPGGFAIFKVLNEGKL-SNVEDLGNEFSTAKLARKMVKLVAFDKFDNTAEALEA 59

Query: 63  CNAVSEGLLTDELRTVLETNLPKVKEGKKSKFSLGVSDPKIGSQISEVTKIPCQCNEFVS 122
              + EG  +  LR  L+ N   V E      +L V+D K+G+ I E  KI C  N  V 
Sbjct: 60  VAKLLEGTPSKGLRKFLKANC--VGE------TLAVADSKLGNIIKEKLKIVCVHNNAVM 111

Query: 123 ELLRGVRLHFDRFVNDLKAGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLD 182
           ELLRG+R      ++ L   DL    LGL HS +R K+KF+ ++VD M+IQAI LLD LD
Sbjct: 112 ELLRGIRSQLTELISGLGDQDLGPMSLGLSHSLARYKLKFSSDKVDTMIIQAIGLLDDLD 171

Query: 183 KDVNSFSMRVREWYSWHFPELVKIVNDNYLYAKVAKFIEDKSKLSEDNISDLTDIVGDED 242
           K++N+++MRVREW+ WHFPEL KIV DN LYAK  K + ++   ++    D ++I+ DE 
Sbjct: 172 KELNTYAMRVREWFGWHFPELAKIVQDNILYAKAVKLMGNRINAAK---LDFSEILADEI 228

Query: 243 KAKEIVEAAKASMG 256
           +A E+ EAA  SMG
Sbjct: 229 EA-ELKEAAVISMG 241


>AT5G27140.1 | Symbols:  | NOP56-like pre RNA processing
           ribonucleoprotein | chr5:9548542-9550597 FORWARD
           LENGTH=445
          Length = 445

 Score =  107 bits (268), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 65/159 (40%), Positives = 92/159 (57%), Gaps = 6/159 (3%)

Query: 96  LGVSDPKIGSQISEVTKIPCQCNEFVSELLRGVRLHFDRFVNDLKAGDLEKAQLGLGHSY 155
           L V+DPK+G  I+E   I C  N+ V ELLRGVR      ++ L   DL    L L H  
Sbjct: 57  LAVADPKLGDIITEKLDIECVHNDAVMELLRGVRSQLTELLSGLDDNDLAPVSLELSHIL 116

Query: 156 SRAKVKFNVNRVDNMVIQAIFLLDTLDKDVNSFSMRVREWYSWHFPELVKIVNDNYLYAK 215
           +R K+K   ++   M+I +I LLD LDK++N+++  V E Y  HFPEL  IV DN LYAK
Sbjct: 117 ARYKLKITSDKT--MIILSISLLDDLDKELNTYTTSVCELYGLHFPELANIVQDNILYAK 174

Query: 216 VAKFIEDKSKLSEDNISDLTDIVGDEDKAKEIVEAAKAS 254
           V K + ++   +     D ++I+ DE +A E+ EA+  S
Sbjct: 175 VVKLMGNRINAA---TLDFSEILADEVEA-ELKEASMVS 209