Miyakogusa Predicted Gene

Lj2g3v0636870.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0636870.1 Non Chatacterized Hit- tr|I1MEF5|I1MEF5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.56918
PE,89.91,0,4FE4S_FER_1,4Fe-4S ferredoxin, iron-sulphur binding,
conserved site; Fer4_7,4Fe-4S binding domain; s,CUFF.35176.1
         (239 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G16700.1 | Symbols:  | Alpha-helical ferredoxin | chr1:571001...   366   e-102
AT1G79010.1 | Symbols:  | Alpha-helical ferredoxin | chr1:297251...   358   2e-99
ATCG01090.1 | Symbols: NDHI | NADPH dehydrogenases | chrC:119244...    71   6e-13

>AT1G16700.1 | Symbols:  | Alpha-helical ferredoxin |
           chr1:5710012-5711694 FORWARD LENGTH=222
          Length = 222

 Score =  366 bits (939), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/228 (78%), Positives = 192/228 (84%), Gaps = 6/228 (2%)

Query: 12  MAAFLARKSLQALRTRQLAVAGQGLQSSQNYGMRLSAHSYATKHSFSNDKDDEEREKLAR 71
           MA+ LAR+S  ALR R LA +GQGLQ S   G++  A SY +      +KDDEE E+LA+
Sbjct: 1   MASLLARRSFSALRARHLAFSGQGLQGSHLCGLQSRAISYGS------NKDDEEAEQLAK 54

Query: 72  EISKDWSSVFERSINTLFLTELVRGLMLTLKYFFEQKVTINYPFEKGPLSPRFRGEHALR 131
           EISKDWS+VFERS+NTLFLTE+VRGL LTLKYFF+ KVTINYPFEKGPLSPRFRGEHALR
Sbjct: 55  EISKDWSTVFERSMNTLFLTEMVRGLSLTLKYFFDPKVTINYPFEKGPLSPRFRGEHALR 114

Query: 132 RYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPV 191
           RYPTGEERCIACKLCEA+CPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPV
Sbjct: 115 RYPTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPV 174

Query: 192 DAIVEGPNFEFVTETHXXXXXXXXXXXXNGDRWETEIAENLRSESLYR 239
           DAIVEGPNFEF TETH            NGDRWETEIAENLRSESLYR
Sbjct: 175 DAIVEGPNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 222


>AT1G79010.1 | Symbols:  | Alpha-helical ferredoxin |
           chr1:29725138-29726933 REVERSE LENGTH=222
          Length = 222

 Score =  358 bits (918), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 174/228 (76%), Positives = 191/228 (83%), Gaps = 6/228 (2%)

Query: 12  MAAFLARKSLQALRTRQLAVAGQGLQSSQNYGMRLSAHSYATKHSFSNDKDDEEREKLAR 71
           MA+ LAR+SL  LR R L ++GQ LQ S  +  RL +       S+ ++KDDEE E+L++
Sbjct: 1   MASILARRSLNTLRARHLVLSGQALQGS--HLSRLQSRGI----SYGSNKDDEEAEQLSK 54

Query: 72  EISKDWSSVFERSINTLFLTELVRGLMLTLKYFFEQKVTINYPFEKGPLSPRFRGEHALR 131
           EISKDW++VFERSINTLFLTE+VRGL LTLKYFF+ KVTINYPFEKGPLSPRFRGEHALR
Sbjct: 55  EISKDWNTVFERSINTLFLTEMVRGLSLTLKYFFDPKVTINYPFEKGPLSPRFRGEHALR 114

Query: 132 RYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPV 191
           RYPTGEERCIACKLCEA+CPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPV
Sbjct: 115 RYPTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPV 174

Query: 192 DAIVEGPNFEFVTETHXXXXXXXXXXXXNGDRWETEIAENLRSESLYR 239
           DAIVEGPNFEF TETH            NGDRWETEIAENLRSESLYR
Sbjct: 175 DAIVEGPNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 222


>ATCG01090.1 | Symbols: NDHI | NADPH dehydrogenases |
           chrC:119244-119762 REVERSE LENGTH=172
          Length = 172

 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 57/111 (51%), Gaps = 6/111 (5%)

Query: 95  RGLMLTLKYFFEQKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQA 154
           +G M+TL +     VTI YP+EK   S RFRG     R     ++CIAC++C  +CP   
Sbjct: 24  QGFMITLSHTNRLPVTIQYPYEKLITSERFRG-----RIHFEFDKCIACEVCVRVCPIDL 78

Query: 155 ITIEAE-EREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFVT 204
             ++ + E     +R   Y ID   CI+CG C E CP + +     +EF T
Sbjct: 79  PVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYEFST 129