Miyakogusa Predicted Gene

Lj2g3v0636830.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0636830.1 Non Chatacterized Hit- tr|C6SZ62|C6SZ62_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.9639
PE=,91.71,0,Ssu72,RNA polymerase II subunit A; FAMILY NOT NAMED,RNA
polymerase II subunit A; seg,NULL,CUFF.35122.1
         (193 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G73820.1 | Symbols:  | Ssu72-like family protein | chr1:27755...   314   2e-86

>AT1G73820.1 | Symbols:  | Ssu72-like family protein |
           chr1:27755740-27757158 REVERSE LENGTH=193
          Length = 193

 Score =  314 bits (804), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 146/193 (75%), Positives = 162/193 (83%)

Query: 1   MKFRYAMVCSSNQNRSMEAHFLLKRQGFDVCSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           M+FRYAMVCSSNQNRSMEAH LLKRQG DV SYGTG+HVKLPGPSLREPNVYDFGTPYK 
Sbjct: 1   MRFRYAMVCSSNQNRSMEAHALLKRQGLDVASYGTGSHVKLPGPSLREPNVYDFGTPYKQ 60

Query: 61  MLDDLRRKDPELYKRNGILPMLKRNSNVKLAPQRWQENAADGSFDIVFTFEEKVFDMVIE 120
           M D+LRRKDPELYKRNGIL M+KRN +VKLAPQRWQ+NA DG FD+V TFEEKVFD V+E
Sbjct: 61  MFDELRRKDPELYKRNGILQMIKRNLSVKLAPQRWQDNAGDGVFDVVMTFEEKVFDSVLE 120

Query: 121 DLHNRDHVLLKTVLVINLEVKDNHEEAAVGARLTLDLCQXXXXXXXXXXXXXXIIGGFEK 180
           DL+NR+  L KT+LV+NLEVKDNHEEAA+G RL L+LCQ              I+ GFEK
Sbjct: 121 DLNNREQSLTKTILVMNLEVKDNHEEAAIGGRLALELCQEIEGNETWEDTIDDIVAGFEK 180

Query: 181 QHRRKLLYSISFY 193
           QHRRKL+YSISFY
Sbjct: 181 QHRRKLVYSISFY 193