Miyakogusa Predicted Gene

Lj2g3v0636820.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0636820.1 tr|I0Z3N6|I0Z3N6_9CHLO Translational machinery
component OS=Coccomyxa subellipsoidea C-169 PE=4
SV=1,46.39,0.00000000000009,39S RIBOSOMAL PROTEIN L18,
MITOCHONDRIAL,NULL; Translational machinery components,NULL; no
descripti,CUFF.35123.1
         (114 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G27820.1 | Symbols:  | Ribosomal L18p/L5e family protein | ch...   146   3e-36
AT3G20230.1 | Symbols:  | Ribosomal L18p/L5e family protein | ch...    58   1e-09
AT1G08845.2 | Symbols:  | Ribosomal L18p/L5e family protein | ch...    56   5e-09
AT1G08845.1 | Symbols:  | Ribosomal L18p/L5e family protein | ch...    56   6e-09
AT3G45020.1 | Symbols:  | Ribosomal L18p/L5e family protein | ch...    50   2e-07

>AT5G27820.1 | Symbols:  | Ribosomal L18p/L5e family protein |
           chr5:9860584-9860928 FORWARD LENGTH=114
          Length = 114

 Score =  146 bits (368), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 68/101 (67%), Positives = 83/101 (82%)

Query: 14  DFLKPYVLRMHFTNKYVSAQVIHXXXXXXXXXXXXQEKALRSSLETKRDVAAAAKIGKIL 73
           D+LKPYVL+MHFTNK+V AQVIH            QEKALR +++  RDVAAA+KIGKIL
Sbjct: 14  DYLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDITRDVAAASKIGKIL 73

Query: 74  AERLLLKEIPAVSVHLKREQKYHGKVKAVIDSLREAGVKLL 114
            ERLL+K+IPAV++ +K+EQ+YHGKVKAVIDS+REAGVKLL
Sbjct: 74  GERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGVKLL 114


>AT3G20230.1 | Symbols:  | Ribosomal L18p/L5e family protein |
           chr3:7055639-7056679 REVERSE LENGTH=187
          Length = 187

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 57/97 (58%)

Query: 15  FLKPYVLRMHFTNKYVSAQVIHXXXXXXXXXXXXQEKALRSSLETKRDVAAAAKIGKILA 74
           +++P++L + F+ K++ A+V+H              + +R+++ +  D  A   IGK++A
Sbjct: 87  YMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIRTNIPSLVDNEACRLIGKLIA 146

Query: 75  ERLLLKEIPAVSVHLKREQKYHGKVKAVIDSLREAGV 111
           ER +  ++ AVS   ++ ++  GK+  VID+++E G+
Sbjct: 147 ERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGI 183


>AT1G08845.2 | Symbols:  | Ribosomal L18p/L5e family protein |
           chr1:2838789-2840955 FORWARD LENGTH=234
          Length = 234

 Score = 56.2 bits (134), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 53/99 (53%)

Query: 15  FLKPYVLRMHFTNKYVSAQVIHXXXXXXXXXXXXQEKALRSSLETKRDVAAAAKIGKILA 74
           +++P+ L +  + ++VSA + H              K +++ L ++ D+ A   IG+IL+
Sbjct: 131 YMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLRSRCDIPACMSIGRILS 190

Query: 75  ERLLLKEIPAVSVHLKREQKYHGKVKAVIDSLREAGVKL 113
           ER    ++   S   + + K+ GK++AV+ SL + G+ +
Sbjct: 191 ERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGIDV 229


>AT1G08845.1 | Symbols:  | Ribosomal L18p/L5e family protein |
           chr1:2839855-2840955 FORWARD LENGTH=189
          Length = 189

 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 53/99 (53%)

Query: 15  FLKPYVLRMHFTNKYVSAQVIHXXXXXXXXXXXXQEKALRSSLETKRDVAAAAKIGKILA 74
           +++P+ L +  + ++VSA + H              K +++ L ++ D+ A   IG+IL+
Sbjct: 86  YMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLRSRCDIPACMSIGRILS 145

Query: 75  ERLLLKEIPAVSVHLKREQKYHGKVKAVIDSLREAGVKL 113
           ER    ++   S   + + K+ GK++AV+ SL + G+ +
Sbjct: 146 ERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGIDV 184


>AT3G45020.1 | Symbols:  | Ribosomal L18p/L5e family protein |
           chr3:16469167-16469568 REVERSE LENGTH=133
          Length = 133

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 12/111 (10%)

Query: 16  LKPYVLRMHFTNKYVSAQVIHXXXXXXXXXXXXQEKALRSSLETKR--DVAAAAKIGKIL 73
           LK YVLR+  + KY++A V+              E  +++SLE  R  +  AAA +G++L
Sbjct: 4   LKRYVLRLFMSIKYITANVVDRNNGRIVTTASTVEHTIKNSLECGRTCNAKAAAIVGEVL 63

Query: 74  AERL---LLKEIPAVSVH--LKREQKYHG-----KVKAVIDSLREAGVKLL 114
           A RL    L++     +H  +K+E +  G     KV AVI+SLR  GV L+
Sbjct: 64  AMRLKVEGLQDGQGRGIHADVKKEIEKKGFKSRTKVWAVINSLRNNGVTLI 114