Miyakogusa Predicted Gene

Lj2g3v0634970.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0634970.1 Non Chatacterized Hit- tr|A5ACS5|A5ACS5_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,34.04,4e-19,DNase I-like,Endonuclease/exonuclease/phosphatase;
seg,NULL; no description,NULL,CUFF.35037.1
         (199 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G43760.1 | Symbols:  | DNAse I-like superfamily protein | chr...    53   1e-07

>AT1G43760.1 | Symbols:  | DNAse I-like superfamily protein |
           chr1:16528880-16531065 REVERSE LENGTH=626
          Length = 626

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/199 (24%), Positives = 80/199 (40%), Gaps = 16/199 (8%)

Query: 9   RDMELFNEFIYDMELVDVPSAGRKFTWIRPM--GAAMSRLDRCLVSLDWLDLWPNCVQHV 66
           R +E F   + D +LVD+PS G  +TW         + +LDR + + DW   +P+ +   
Sbjct: 247 RGLEEFQNCLRDSDLVDIPSRGVHYTWSNHQDDNPIIRKLDRAIANGDWFSSFPSAIAVF 306

Query: 67  LDQEFSDH--CLIVLKSLNQDWGPKPFRVLNCWFNDPNFRSFVQESWSALNVPGRGTFIM 124
                SDH  C+I+L++L +    K FR  +     P F   +  +W      G   F +
Sbjct: 307 ELSGVSDHSPCIIILENLPKR-SKKCFRYFSFLSTHPTFLVSLTVAWEEQIPVGSHMFSL 365

Query: 125 KEXXXXXXXXXXXWNDESFGDLAAKRKGTILKMNELDLKAM----DQLIYEEEIMDRKLL 180
            E            N + FG++  K K  +  +  +  + +    D L   E +  +K  
Sbjct: 366 GEHLKAAKKCCKLLNRQGFGNIQHKTKEALDSLESIQSQLLTNPSDSLFRVEHVARKK-- 423

Query: 181 MEEYWR-LTNLHESLLRQK 198
               W       ES  RQK
Sbjct: 424 ----WNFFAAALESFYRQK 438