Miyakogusa Predicted Gene
- Lj2g3v0633870.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v0633870.2 Non Chatacterized Hit- tr|G7JP36|G7JP36_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,82.12,0,NRDE-2,siRNA-mediated silencing protein NRDE-2; HAT
(Half-A-TPR) repeats,RNA-processing protein, HAT,CUFF.34985.2
(591 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G17740.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 682 0.0
AT3G17712.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 234 1e-61
AT3G17712.3 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 193 3e-49
AT3G17712.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 193 4e-49
>AT3G17740.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Protein of unknown function DUF1740
(InterPro:IPR013633); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT3G17712.1); Has 409
Blast hits to 335 proteins in 133 species: Archae - 1;
Bacteria - 0; Metazoa - 140; Fungi - 188; Plants - 42;
Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).
| chr3:6068003-6072814 REVERSE LENGTH=1149
Length = 1149
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/589 (56%), Positives = 432/589 (73%), Gaps = 4/589 (0%)
Query: 6 DEDEGKDVEPEVDTENLLNLLGIDVNSGDGGEVTEASTWIKWSAEESSRDCDQWMPVRXX 65
+E E ++ +PE DTE +L LLGIDVN+ EV + STW+KW EE SRD QWMP R
Sbjct: 560 EEMEDENSKPEDDTEAMLKLLGIDVNTAASDEVKDTSTWVKWFEEEVSRDHSQWMPTRKA 619
Query: 66 XXXXXXXXXXXXXXXXQLLRIILYEDVTEYLFTLSTEEARLSLVSQFIDFYGGKMSHLFC 125
QL ++LYED+ YLF+L ++EARLSLV QFIDF+G +S
Sbjct: 620 GEFSSVEGMGEGEDEEQLSSVVLYEDINGYLFSLRSKEARLSLVYQFIDFFGAHISPWTS 679
Query: 126 SNSPSWTENVLSMEDLPDSMLEKLKCIHEVLTKTKNSPAGFNFEFPSGS--LSSNADIMK 183
SNS SW+E + S+E DSMLE L+ +HE L+K+ ++ GS LS ++MK
Sbjct: 680 SNSLSWSEKISSLETFSDSMLENLRSVHECLSKSDSANCFSLGSLLGGSCDLSMRTEMMK 739
Query: 184 FVRNAVLLCLTVFPRNHILEEAVLISEELYVTKMNSSNCMATPCRALAKSLLKSDRQDVL 243
F+RNA+LLCL VFPRN+ILEEAVL++EEL+VT M + PC+ALAK LLKSDRQD+L
Sbjct: 740 FLRNAILLCLNVFPRNYILEEAVLVAEELFVTNMKTCEVATMPCQALAKRLLKSDRQDLL 799
Query: 244 LCGVYAQREANYGNIDLARKVFDMALLSVEGLPVELQSSAPLLYFWYAEMELENNSGG-- 301
LCGVYAQREA GN+ AR+VFDMAL S+ GLP ELQ + PLL WYAE E+ N+SG
Sbjct: 800 LCGVYAQREAASGNMKHARRVFDMALTSICGLPKELQCNTPLLCLWYAESEVANSSGSGR 859
Query: 302 DREPSYRAIHVLSCLGNGTKYNPFKSQASSLQVLRAHQGFKERLRTVRSSWVRGMINDHS 361
D E S RA+H+L LG+G Y+P+ SQ+SS+Q+LRA QGF+E+L+ ++S+W G+ +D S
Sbjct: 860 DTESSSRAMHILCYLGSGLAYSPYTSQSSSMQILRARQGFREKLKKIQSTWSHGVTDDQS 919
Query: 362 VALVCSAALFEELTTGWEAGIEVLDQAFAAVLPERRSISYQLEFLFNYYIRILRRHQRQS 421
ALVCSAALFEELT +E+L+ F++VLP R+S S+QLE LFNYY+R+L+RHQ
Sbjct: 920 AALVCSAALFEELTNDLPGALEILEHMFSSVLPGRKSQSHQLELLFNYYVRMLQRHQDDL 979
Query: 422 SLLKVWESISQGLQIYPFSPELLKGVVEVGHFHTTSNRLRRILDDCCYKKPSVLVWLFTL 481
+L ++W+ IS+GLQ+YP +PEL + +V++ + TS++LR + DD K SV+VWLF L
Sbjct: 980 TLSQLWKPISEGLQLYPLNPELYRALVDICNHRMTSHKLRMMFDDYSRKNSSVVVWLFAL 1039
Query: 482 SYEMSRGGSHHRIRGLFERALGNDRLCSSVVLWRCYLVYELNIAHDPSSARRVFFRAIHA 541
SYE+S+GGS HRIRGLFERAL D +SV+LWRCY+ YE++IA +PS+ARR++FRAI+A
Sbjct: 1040 SYELSKGGSSHRIRGLFERALAQDTQNNSVILWRCYIAYEIDIADNPSAARRIYFRAINA 1099
Query: 542 CPWSKRLWLDGFHQLNSVLTGKELSDLQEVMRDKELNLRTDIYEILLQE 590
CPWSK+LWLDGF +L SVLT KE+SDLQEVMRDKELN+RTDIYEILL +
Sbjct: 1100 CPWSKKLWLDGFGKLGSVLTAKEMSDLQEVMRDKELNIRTDIYEILLMQ 1148
>AT3G17712.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF1740
(InterPro:IPR013633); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT3G17740.1). |
chr3:6056890-6060225 FORWARD LENGTH=856
Length = 856
Score = 234 bits (597), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 128/273 (46%), Positives = 170/273 (62%), Gaps = 21/273 (7%)
Query: 6 DEDEGKDVEPEVDTENLLNLLGIDVNSGDGGEVTEASTWIKWSAEESSRDCDQWMPVRXX 65
+E E ++ +PE DTE +L LLGIDVN+ EV + STW++W EE SRD QWMP R
Sbjct: 566 EEMEDENSKPEDDTEAMLKLLGIDVNTAASDEVKDTSTWVEWFEEEVSRDHSQWMPTRKA 625
Query: 66 XXXXXXXXXXXXXXXXQLLRIILYEDVTEYLFTLSTEEARLSLVSQFIDFYGGKMSHLFC 125
QL ++LYED+ YLF+L ++EARLSLV QFIDF+G +S +
Sbjct: 626 GEFSSVEGMGEGEDEEQLSSVVLYEDINGYLFSLRSKEARLSLVYQFIDFFGAHISPMDF 685
Query: 126 SNSPSWTENVLSMEDLPDSMLEKLKCIHEVLTKTKNSPAGFNFEFPSGS--LSSNADIMK 183
SW+E + S+E L DSMLE L+ +HE L+K+ ++ GS LS ++MK
Sbjct: 686 QQQLSWSEKISSLETLSDSMLENLRSVHECLSKSDSANCFSLGSLLGGSCDLSMRTEMMK 745
Query: 184 FVRNAVLLCLTVFPRNHILEEAVLISEELYVTKMNSSNCMATPCRALAKSLLKSDRQDVL 243
F+RNA+LLCL VFP+N+I EEAVL++EEL+VT M + C +D+L
Sbjct: 746 FLRNAILLCLNVFPQNYIPEEAVLVTEELFVTNMKT--C-----------------EDLL 786
Query: 244 LCGVYAQREANYGNIDLARKVFDMALLSVEGLP 276
LCGVYAQREA GN+ AR+VFDMAL S+ GLP
Sbjct: 787 LCGVYAQREAASGNMKHARRVFDMALTSICGLP 819
>AT3G17712.3 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF1740
(InterPro:IPR013633); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT3G17740.1). |
chr3:6056983-6059913 FORWARD LENGTH=769
Length = 769
Score = 193 bits (490), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 101/216 (46%), Positives = 138/216 (63%), Gaps = 2/216 (0%)
Query: 6 DEDEGKDVEPEVDTENLLNLLGIDVNSGDGGEVTEASTWIKWSAEESSRDCDQWMPVRXX 65
+E E ++ +PE DTE +L LLGIDVN+ EV + STW++W EE SRD QWMP R
Sbjct: 535 EEMEDENSKPEDDTEAMLKLLGIDVNTAASDEVKDTSTWVEWFEEEVSRDHSQWMPTRKA 594
Query: 66 XXXXXXXXXXXXXXXXQLLRIILYEDVTEYLFTLSTEEARLSLVSQFIDFYGGKMSHLFC 125
QL ++LYED+ YLF+L ++EARLSLV QFIDF+G +S +
Sbjct: 595 GEFSSVEGMGEGEDEEQLSSVVLYEDINGYLFSLRSKEARLSLVYQFIDFFGAHISPMDF 654
Query: 126 SNSPSWTENVLSMEDLPDSMLEKLKCIHEVLTKTKNSPAGFNFEFPSGS--LSSNADIMK 183
SW+E + S+E L DSMLE L+ +HE L+K+ ++ GS LS ++MK
Sbjct: 655 QQQLSWSEKISSLETLSDSMLENLRSVHECLSKSDSANCFSLGSLLGGSCDLSMRTEMMK 714
Query: 184 FVRNAVLLCLTVFPRNHILEEAVLISEELYVTKMNS 219
F+RNA+LLCL VFP+N+I EEAVL++EEL+VT M +
Sbjct: 715 FLRNAILLCLNVFPQNYIPEEAVLVTEELFVTNMKT 750
>AT3G17712.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF1740
(InterPro:IPR013633); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT3G17740.1); Has 265
Blast hits to 264 proteins in 123 species: Archae - 1;
Bacteria - 0; Metazoa - 116; Fungi - 89; Plants - 33;
Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
| chr3:6056983-6059913 FORWARD LENGTH=794
Length = 794
Score = 193 bits (490), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 101/216 (46%), Positives = 138/216 (63%), Gaps = 2/216 (0%)
Query: 6 DEDEGKDVEPEVDTENLLNLLGIDVNSGDGGEVTEASTWIKWSAEESSRDCDQWMPVRXX 65
+E E ++ +PE DTE +L LLGIDVN+ EV + STW++W EE SRD QWMP R
Sbjct: 560 EEMEDENSKPEDDTEAMLKLLGIDVNTAASDEVKDTSTWVEWFEEEVSRDHSQWMPTRKA 619
Query: 66 XXXXXXXXXXXXXXXXQLLRIILYEDVTEYLFTLSTEEARLSLVSQFIDFYGGKMSHLFC 125
QL ++LYED+ YLF+L ++EARLSLV QFIDF+G +S +
Sbjct: 620 GEFSSVEGMGEGEDEEQLSSVVLYEDINGYLFSLRSKEARLSLVYQFIDFFGAHISPMDF 679
Query: 126 SNSPSWTENVLSMEDLPDSMLEKLKCIHEVLTKTKNSPAGFNFEFPSGS--LSSNADIMK 183
SW+E + S+E L DSMLE L+ +HE L+K+ ++ GS LS ++MK
Sbjct: 680 QQQLSWSEKISSLETLSDSMLENLRSVHECLSKSDSANCFSLGSLLGGSCDLSMRTEMMK 739
Query: 184 FVRNAVLLCLTVFPRNHILEEAVLISEELYVTKMNS 219
F+RNA+LLCL VFP+N+I EEAVL++EEL+VT M +
Sbjct: 740 FLRNAILLCLNVFPQNYIPEEAVLVTEELFVTNMKT 775