Miyakogusa Predicted Gene

Lj2g3v0632440.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0632440.1 tr|C1FGI8|C1FGI8_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17)
GN=MICPUN_101999,47.5,1e-16,DNA_pol_E_B,DNA polymerase alpha/epsilon,
subunit B; seg,NULL; SUBFAMILY NOT NAMED,NULL; DNA
POLYMER,CUFF.34942.1
         (525 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G22110.1 | Symbols: ATDPB2, CYL2, DPB2 | DNA polymerase epsil...   719   0.0  

>AT5G22110.1 | Symbols: ATDPB2, CYL2, DPB2 | DNA polymerase epsilon
           subunit B2 | chr5:7331071-7334178 REVERSE LENGTH=526
          Length = 526

 Score =  719 bits (1856), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/510 (67%), Positives = 407/510 (79%), Gaps = 7/510 (1%)

Query: 16  RGYNLKLEALDEILSYVSRFEGXXXXXXXXXXXXXXEHESLNSTIIDKEPVHRVVTLLLK 75
           RGYNLK +ALDEIL +  +F                + E+  S+ +D E V  ++  LL 
Sbjct: 18  RGYNLKFDALDEILVFADQFPDDDDGEAIDLLLDNLQ-ETHKSSTVDAESVRGLINRLLG 76

Query: 76  XXXXXXXXXXXXXXXXXXXXLRVVDAFLVSKFKYDAIRKQFYEHPGSLPIHGDASAKAAL 135
                               L ++DAFLV KF YD+++K+F EH  SLPIHG+ASAK AL
Sbjct: 77  AHNAPEEPTTSASS------LAIIDAFLVPKFGYDSVKKKFNEHTSSLPIHGEASAKTAL 130

Query: 136 YRDRFLLLFQRLSRDQNFSKPAFDSEFSHFGSCEISPIQSLVGRTGRRWVMGVISQLEDG 195
           YR+RF+LL QR+SR ++FS+PAFD+E S F + EIS IQSL+ + GR+WVMGVISQLEDG
Sbjct: 131 YRERFMLLSQRVSRAEHFSRPAFDAEMSQFENNEISSIQSLISQRGRKWVMGVISQLEDG 190

Query: 196 HFYLEDLSASVEINLSNAKITTGFFSENTIVVVEGEMLVEGIFQVLTCGFPPLEDRDKSL 255
           HFYLEDLSASVEI+LS AKITTGFF+ENTI++ EGEM V GIFQV+TCGFPPLEDRDK+L
Sbjct: 191 HFYLEDLSASVEIDLSKAKITTGFFTENTIILAEGEMQVNGIFQVITCGFPPLEDRDKTL 250

Query: 256 KTLAGHDFFGGGTFTKEETIRLVEMEKRAVNDMFVILSDVWLDNDEALGKLGTVLDGFES 315
           K  + +DFFGGGT TKEE I+L ++E++AVND FVILSD+WLD++E + KL TVLDGFES
Sbjct: 251 KAHSEYDFFGGGTLTKEEMIKLADLERQAVNDTFVILSDIWLDDEEVMRKLETVLDGFES 310

Query: 316 VDVVPSLFVFMGNFSSHPCNLSFHSYSTLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDD 375
           V+ VPSLFVFMGNF S PCNLSF SYS+LR QFGKLG+MI  HPRLKE+SRFLFIPGP+D
Sbjct: 311 VETVPSLFVFMGNFCSRPCNLSFGSYSSLREQFGKLGRMIGNHPRLKENSRFLFIPGPED 370

Query: 376 AGPSTVLPRCALPKYITEELQEHIPNAIFASNPCRIKFYTQEIVFFRQDLLYRMRRSCLM 435
           AGPSTVLPRCALPKY+TEEL+  IPNAIF+SNPCR+KFY QEIVFFRQDLLYRMRRSCL+
Sbjct: 371 AGPSTVLPRCALPKYLTEELRNIIPNAIFSSNPCRVKFYNQEIVFFRQDLLYRMRRSCLV 430

Query: 436 PPSTEETDDPFQHLVATITHQSHLCPLPLTVQPILWNYDHCLYLYPTPHTIVLGDRSQQK 495
            PS+EET+DPF+HLV TITHQSHLCPLPL VQPI+WNYDH L LYPTPHTIVLGD+S+Q+
Sbjct: 431 TPSSEETNDPFKHLVYTITHQSHLCPLPLMVQPIIWNYDHALRLYPTPHTIVLGDKSEQE 490

Query: 496 AFKYTGITCFNPGSFSIDSTFVVYRPCSQE 525
             K+ G TCFNPGSFS DSTFV YRP +QE
Sbjct: 491 VCKFGGTTCFNPGSFSTDSTFVAYRPSTQE 520