Miyakogusa Predicted Gene

Lj2g3v0621780.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0621780.1 CUFF.34898.1
         (108 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G03280.1 | Symbols: PETC, PGR1 | photosynthetic electron tran...    48   1e-06
AT4G03280.2 | Symbols: PETC, PGR1 | photosynthetic electron tran...    47   2e-06

>AT4G03280.1 | Symbols: PETC, PGR1 | photosynthetic electron
           transfer C | chr4:1440314-1441717 FORWARD LENGTH=229
          Length = 229

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/30 (80%), Positives = 25/30 (83%), Gaps = 2/30 (6%)

Query: 69  AKDAIGNYVFAE--LKTHGPGDRTLTQGLK 96
           AKDA+GN V A   LKTHGPGDRTLTQGLK
Sbjct: 105 AKDALGNDVVAAEWLKTHGPGDRTLTQGLK 134


>AT4G03280.2 | Symbols: PETC, PGR1 | photosynthetic electron
           transfer C | chr4:1440462-1441717 FORWARD LENGTH=210
          Length = 210

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/30 (80%), Positives = 25/30 (83%), Gaps = 2/30 (6%)

Query: 69  AKDAIGNYVFAE--LKTHGPGDRTLTQGLK 96
           AKDA+GN V A   LKTHGPGDRTLTQGLK
Sbjct: 86  AKDALGNDVVAAEWLKTHGPGDRTLTQGLK 115