Miyakogusa Predicted Gene

Lj2g3v0609610.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0609610.1 Non Chatacterized Hit- tr|A5BUG6|A5BUG6_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,43.78,1.99993e-41,rve,Integrase, catalytic core;
gag_pre-integrs,GAG-pre-integrase domain; PREDICTED PROTEIN
(FRAGMENT,CUFF.34926.1
         (223 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00300.1 | Symbols: ORF145A | Gag-Pol-related retrotransposon...    58   4e-09

>ATMG00300.1 | Symbols: ORF145A | Gag-Pol-related retrotransposon
           family protein | chrM:89617-90054 REVERSE LENGTH=145
          Length = 145

 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 4/85 (4%)

Query: 66  NKCAQADIDSRLWHSRLGHASQKIVSHVLKQCNPSLSLNKISVV--CESCCLAKSHQLPF 123
           N    A  ++RLWHSRL H SQ+ +  ++K+    L  +K+S +  CE C   K+H++ F
Sbjct: 60  NLAETAKDETRLWHSRLAHMSQRGMELLVKK--GFLDSSKVSSLKFCEDCIYGKTHRVNF 117

Query: 124 YSSLSVYRKPLELVYSDIWGPSPMP 148
            +     + PL+ V+SD+WG   +P
Sbjct: 118 STGQHTTKNPLDYVHSDLWGAPSVP 142