Miyakogusa Predicted Gene

Lj2g3v0592880.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0592880.1 Non Chatacterized Hit- tr|B7FJ52|B7FJ52_MEDTR
Putative uncharacterized protein OS=Medicago truncatul,86.53,0,no
description,Nucleotide-binding, alpha-beta plait; RNA recognition
motif,RNA recognition motif dom,CUFF.34764.1
         (241 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G47580.1 | Symbols: U1A | spliceosomal protein U1A | chr2:195...   288   2e-78
AT2G30260.1 | Symbols: U2B'' | U2 small nuclear ribonucleoprotei...   240   6e-64
AT1G06960.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   218   3e-57
AT1G06960.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   217   5e-57
AT1G06960.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   207   7e-54

>AT2G47580.1 | Symbols: U1A | spliceosomal protein U1A |
           chr2:19517229-19518686 FORWARD LENGTH=250
          Length = 250

 Score =  288 bits (738), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 157/249 (63%), Positives = 176/249 (70%), Gaps = 9/249 (3%)

Query: 1   MTEAN--AGPETPQNNTIYXXXXXXXXXXXXXXXXXHAVFSQFGKILEVFAAKTLKHKGQ 58
           M EAN   G E   N TIY                 +AVFSQFGKILE+ A KT KHKGQ
Sbjct: 3   MQEANQGGGSEVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQ 62

Query: 59  AWVVFEDLSSASNALRQMQGFPFYDKPMRIQYXXXXXXXXXXXXGTFVPREKRKRHEDKG 118
           AWVVF++  SAS A+ +M  FPFYDK MRIQY            GTFVPREKRKRHE+KG
Sbjct: 63  AWVVFDNTESASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKG 122

Query: 119 NKKRK-DQN-DANLAGMGLNPAYPGAYGATP----IPYPGGLKSMVPEAPAPPNNILFIQ 172
             K+K DQ+ D+   GM +N AYPG YGA P    +PYPGG+K  +PEAPAPPNNILF+Q
Sbjct: 123 GGKKKKDQHHDSTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEAPAPPNNILFVQ 182

Query: 173 NLPNETTPMMLQMLFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQALQGFKITPQN 232
           NLP+ETTPM+LQMLF QY GFKEVRM+E KPGIAFVE+ DEMQSTVAMQ LQGFKI  QN
Sbjct: 183 NLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKIQ-QN 241

Query: 233 PMLITYAKK 241
            MLITYAKK
Sbjct: 242 QMLITYAKK 250


>AT2G30260.1 | Symbols: U2B'' | U2 small nuclear ribonucleoprotein B
           | chr2:12905557-12907434 REVERSE LENGTH=232
          Length = 232

 Score =  240 bits (613), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 120/235 (51%), Positives = 158/235 (67%), Gaps = 9/235 (3%)

Query: 9   ETPQNNTIYXXXXXXXXXXXXXXXXXHAVFSQFGKILEVFAAKTLKHKGQAWVVFEDLSS 68
           + P N +IY                 + +FSQFG+IL+V A KT K +GQAWV F ++++
Sbjct: 5   DIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTA 64

Query: 69  ASNALRQMQGFPFYDKPMRIQYXXXXXXXXXXXXGTFVPREKRKRHEDKGNKKRKDQNDA 128
           A +A+RQMQ FPFYDKPMR+QY            GTFVP++K+++ E+K  +KR+D    
Sbjct: 65  AGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKREDSQRP 124

Query: 129 NLAGMGLNPAYPGAYGATPIPY--PGGLKSMVPEAPAPPNNILFIQNLPNETTPMMLQML 186
           N A  G +   P A    P P   P G ++M      PPNNILFIQNLP+ETT MMLQ+L
Sbjct: 125 NTAN-GPSANGPSANNGVPAPSFQPSGQETM------PPNNILFIQNLPHETTSMMLQLL 177

Query: 187 FLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQALQGFKITPQNPMLITYAKK 241
           F QYPGFKE+RM++ KPGIAFVEY D++Q+++AMQ LQGFKITPQNPM+I++AKK
Sbjct: 178 FEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232


>AT1G06960.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:2135930-2137533 FORWARD LENGTH=229
          Length = 229

 Score =  218 bits (555), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 122/240 (50%), Positives = 156/240 (65%), Gaps = 22/240 (9%)

Query: 9   ETPQNNTIYXXXXXXXXXXXXXXXXXHAVFSQFGKILEVFAAKTLKHKGQAWVVFEDLSS 68
           + P N +IY                 + +FSQFG++L+V A KT K +GQAWVVF ++++
Sbjct: 5   DIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTA 64

Query: 69  ASNALRQMQGFPFYDKPMRIQYXXXXXXXXXXXXGTFVPREKRKRHEDKGNKKRKDQNDA 128
           ASNA+RQMQ FPFYDKPMRIQY            G+FVP+EK+ + E+K  +KR  +   
Sbjct: 65  ASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHAEETQ 124

Query: 129 NLAGMGLNPAYPGAYGAT-----PIP--YPGGLKSMVPEAPAPPNNILFIQNLPNETTPM 181
                   P+ P   GAT     P+P   P G  +M      PPNNILFI NLP ET  M
Sbjct: 125 Q-------PSMPN--GATTQNGMPVPPFQPSGQDTM------PPNNILFIHNLPIETNSM 169

Query: 182 MLQMLFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQALQGFKITPQNPMLITYAKK 241
           MLQ+LF QYPGFKE+RM+E KPGIAFVEY D++QS++AMQALQGFKITPQNPM++++AKK
Sbjct: 170 MLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229


>AT1G06960.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:2135930-2137533 FORWARD LENGTH=228
          Length = 228

 Score =  217 bits (553), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 122/239 (51%), Positives = 156/239 (65%), Gaps = 21/239 (8%)

Query: 9   ETPQNNTIYXXXXXXXXXXXXXXXXXHAVFSQFGKILEVFAAKTLKHKGQAWVVFEDLSS 68
           + P N +IY                 + +FSQFG++L+V A KT K +GQAWVVF ++++
Sbjct: 5   DIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTA 64

Query: 69  ASNALRQMQGFPFYDKPMRIQYXXXXXXXXXXXXGTFVPREKRKRHEDKGNKKRKDQNDA 128
           ASNA+RQMQ FPFYDKPMRIQY            G+FVP+EK+ + E+K  +KR  +   
Sbjct: 65  ASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHAEETQ 124

Query: 129 NLAGMGLNPAYPGAYGAT-----PIPY-PGGLKSMVPEAPAPPNNILFIQNLPNETTPMM 182
                   P+ P   GAT     P P+ P G  +M      PPNNILFI NLP ET  MM
Sbjct: 125 Q-------PSMPN--GATTQNGMPPPFQPSGQDTM------PPNNILFIHNLPIETNSMM 169

Query: 183 LQMLFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQALQGFKITPQNPMLITYAKK 241
           LQ+LF QYPGFKE+RM+E KPGIAFVEY D++QS++AMQALQGFKITPQNPM++++AKK
Sbjct: 170 LQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 228


>AT1G06960.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:2135982-2137533 FORWARD LENGTH=200
          Length = 200

 Score =  207 bits (526), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 115/209 (55%), Positives = 146/209 (69%), Gaps = 22/209 (10%)

Query: 40  QFGKILEVFAAKTLKHKGQAWVVFEDLSSASNALRQMQGFPFYDKPMRIQYXXXXXXXXX 99
           +FG++L+V A KT K +GQAWVVF ++++ASNA+RQMQ FPFYDKPMRIQY         
Sbjct: 7   KFGRLLDVVALKTPKLRGQAWVVFTEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVT 66

Query: 100 XXXGTFVPREKRKRHEDKGNKKRKDQNDANLAGMGLNPAYPGAYGAT-----PIP--YPG 152
              G+FVP+EK+ + E+K  +KR  +           P+ P   GAT     P+P   P 
Sbjct: 67  KAEGSFVPKEKKMKQEEKVERKRHAEETQQ-------PSMPN--GATTQNGMPVPPFQPS 117

Query: 153 GLKSMVPEAPAPPNNILFIQNLPNETTPMMLQMLFLQYPGFKEVRMVETKPGIAFVEYGD 212
           G  +M      PPNNILFI NLP ET  MMLQ+LF QYPGFKE+RM+E KPGIAFVEY D
Sbjct: 118 GQDTM------PPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYED 171

Query: 213 EMQSTVAMQALQGFKITPQNPMLITYAKK 241
           ++QS++AMQALQGFKITPQNPM++++AKK
Sbjct: 172 DVQSSMAMQALQGFKITPQNPMVVSFAKK 200