Miyakogusa Predicted Gene

Lj2g3v0561150.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0561150.1 Non Chatacterized Hit- tr|H9X176|H9X176_PINTA
Uncharacterized protein (Fragment) OS=Pinus taeda
GN=C,89.55,1e-17,seg,NULL; coiled-coil,NULL,CUFF.34720.1
         (130 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G73350.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   149   4e-37
AT1G73350.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   141   1e-34
AT1G73350.3 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   117   3e-27

>AT1G73350.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; EXPRESSED IN: 25 plant
           structures; EXPRESSED DURING: 15 growth stages; Has 50
           Blast hits to 50 proteins in 20 species: Archae - 0;
           Bacteria - 0; Metazoa - 7; Fungi - 3; Plants - 36;
           Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
           | chr1:27575683-27577126 REVERSE LENGTH=210
          Length = 210

 Score =  149 bits (377), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 81/130 (62%), Positives = 85/130 (65%), Gaps = 2/130 (1%)

Query: 1   MAGREVREYTNLSXXXXXXXXXXXXXXXXXXVTFQRMVAKMQEVAGERGGYLHGRGALDS 60
           MAGREV+EYTNLS                  VTFQRMVAKMQEVAGERGGYLHGRGALDS
Sbjct: 1   MAGREVKEYTNLSDPKDKKSGKGKIDDED--VTFQRMVAKMQEVAGERGGYLHGRGALDS 58

Query: 61  DDLLYLKEQMXXXXXXXXXXXXXXXXXXXXXXXXXSLVDSSPASVPLPLRVEPKPKSGIR 120
           DDLLYLKEQM                         +  DSSPAS+PLPLRVEPKPKSGIR
Sbjct: 59  DDLLYLKEQMEAEEDAERLLRRTEKRAFAAFKKAATQADSSPASIPLPLRVEPKPKSGIR 118

Query: 121 QQDLLKKVVE 130
           QQDLL+KVVE
Sbjct: 119 QQDLLRKVVE 128


>AT1G73350.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: nucleus;
           EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15
           growth stages; Has 46 Blast hits to 46 proteins in 19
           species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi -
           3; Plants - 36; Viruses - 0; Other Eukaryotes - 4
           (source: NCBI BLink). | chr1:27575683-27577126 REVERSE
           LENGTH=208
          Length = 208

 Score =  141 bits (355), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 79/130 (60%), Positives = 83/130 (63%), Gaps = 4/130 (3%)

Query: 1   MAGREVREYTNLSXXXXXXXXXXXXXXXXXXVTFQRMVAKMQEVAGERGGYLHGRGALDS 60
           MAGREV+EYTNLS                  VTFQRMVAKMQEVAGERGGYLHGRG  DS
Sbjct: 1   MAGREVKEYTNLSDPKDKKSGKGKIDDED--VTFQRMVAKMQEVAGERGGYLHGRG--DS 56

Query: 61  DDLLYLKEQMXXXXXXXXXXXXXXXXXXXXXXXXXSLVDSSPASVPLPLRVEPKPKSGIR 120
           DDLLYLKEQM                         +  DSSPAS+PLPLRVEPKPKSGIR
Sbjct: 57  DDLLYLKEQMEAEEDAERLLRRTEKRAFAAFKKAATQADSSPASIPLPLRVEPKPKSGIR 116

Query: 121 QQDLLKKVVE 130
           QQDLL+KVVE
Sbjct: 117 QQDLLRKVVE 126


>AT1G73350.3 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; EXPRESSED IN: 25 plant
           structures; EXPRESSED DURING: 15 growth stages; Has
           30201 Blast hits to 17322 proteins in 780 species:
           Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
           3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
           2996 (source: NCBI BLink). | chr1:27575683-27576479
           REVERSE LENGTH=172
          Length = 172

 Score =  117 bits (292), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/90 (66%), Positives = 63/90 (70%)

Query: 41  MQEVAGERGGYLHGRGALDSDDLLYLKEQMXXXXXXXXXXXXXXXXXXXXXXXXXSLVDS 100
           MQEVAGERGGYLHGRGALDSDDLLYLKEQM                         +  DS
Sbjct: 1   MQEVAGERGGYLHGRGALDSDDLLYLKEQMEAEEDAERLLRRTEKRAFAAFKKAATQADS 60

Query: 101 SPASVPLPLRVEPKPKSGIRQQDLLKKVVE 130
           SPAS+PLPLRVEPKPKSGIRQQDLL+KVVE
Sbjct: 61  SPASIPLPLRVEPKPKSGIRQQDLLRKVVE 90