Miyakogusa Predicted Gene

Lj2g3v0561110.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0561110.1 Non Chatacterized Hit- tr|B6U779|B6U779_MAIZE
Putative uncharacterized protein OS=Zea mays PE=2
SV=1,47.78,0.00000000000003,seg,NULL,CUFF.34710.1
         (388 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58210.4 | Symbols:  | hydroxyproline-rich glycoprotein famil...    74   2e-13
AT5G58210.2 | Symbols:  | hydroxyproline-rich glycoprotein famil...    74   2e-13
AT5G58210.1 | Symbols:  | hydroxyproline-rich glycoprotein famil...    74   2e-13
AT5G58210.3 | Symbols:  | hydroxyproline-rich glycoprotein famil...    74   2e-13
AT3G52170.2 | Symbols:  | DNA binding | chr3:19347039-19349099 R...    66   5e-11
AT3G52170.1 | Symbols:  | DNA binding | chr3:19347039-19349099 R...    66   5e-11

>AT5G58210.4 | Symbols:  | hydroxyproline-rich glycoprotein family
           protein | chr5:23552427-23554045 FORWARD LENGTH=380
          Length = 380

 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 31/56 (55%), Positives = 44/56 (78%)

Query: 63  KRVSKQQRRAIVESFVNKHRSENAGKFPTITDIQKQVGGGFYSIREIIKELEYKSK 118
           KR+SK  RRA+VESFVN++R+ NAG+FP++    KQVGG +Y +R+I +EL+ K K
Sbjct: 47  KRLSKDDRRALVESFVNEYRATNAGRFPSLDATHKQVGGSYYIVRDIFQELKLKPK 102


>AT5G58210.2 | Symbols:  | hydroxyproline-rich glycoprotein family
           protein | chr5:23552427-23554045 FORWARD LENGTH=380
          Length = 380

 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 31/56 (55%), Positives = 44/56 (78%)

Query: 63  KRVSKQQRRAIVESFVNKHRSENAGKFPTITDIQKQVGGGFYSIREIIKELEYKSK 118
           KR+SK  RRA+VESFVN++R+ NAG+FP++    KQVGG +Y +R+I +EL+ K K
Sbjct: 47  KRLSKDDRRALVESFVNEYRATNAGRFPSLDATHKQVGGSYYIVRDIFQELKLKPK 102


>AT5G58210.1 | Symbols:  | hydroxyproline-rich glycoprotein family
           protein | chr5:23552427-23554045 FORWARD LENGTH=380
          Length = 380

 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 31/56 (55%), Positives = 44/56 (78%)

Query: 63  KRVSKQQRRAIVESFVNKHRSENAGKFPTITDIQKQVGGGFYSIREIIKELEYKSK 118
           KR+SK  RRA+VESFVN++R+ NAG+FP++    KQVGG +Y +R+I +EL+ K K
Sbjct: 47  KRLSKDDRRALVESFVNEYRATNAGRFPSLDATHKQVGGSYYIVRDIFQELKLKPK 102


>AT5G58210.3 | Symbols:  | hydroxyproline-rich glycoprotein family
           protein | chr5:23552427-23554045 FORWARD LENGTH=380
          Length = 380

 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 31/56 (55%), Positives = 44/56 (78%)

Query: 63  KRVSKQQRRAIVESFVNKHRSENAGKFPTITDIQKQVGGGFYSIREIIKELEYKSK 118
           KR+SK  RRA+VESFVN++R+ NAG+FP++    KQVGG +Y +R+I +EL+ K K
Sbjct: 47  KRLSKDDRRALVESFVNEYRATNAGRFPSLDATHKQVGGSYYIVRDIFQELKLKPK 102


>AT3G52170.2 | Symbols:  | DNA binding | chr3:19347039-19349099
           REVERSE LENGTH=499
          Length = 499

 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 42/55 (76%)

Query: 59  QKGRKRVSKQQRRAIVESFVNKHRSENAGKFPTITDIQKQVGGGFYSIREIIKEL 113
           ++ R R+ K++R+ +VESF+ KH+  N G FP+++   K+VGG FY+IREI++E+
Sbjct: 24  KRTRNRIPKEERKTLVESFIKKHQKLNNGSFPSLSLTHKEVGGSFYTIREIVREI 78


>AT3G52170.1 | Symbols:  | DNA binding | chr3:19347039-19349099
           REVERSE LENGTH=499
          Length = 499

 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 42/55 (76%)

Query: 59  QKGRKRVSKQQRRAIVESFVNKHRSENAGKFPTITDIQKQVGGGFYSIREIIKEL 113
           ++ R R+ K++R+ +VESF+ KH+  N G FP+++   K+VGG FY+IREI++E+
Sbjct: 24  KRTRNRIPKEERKTLVESFIKKHQKLNNGSFPSLSLTHKEVGGSFYTIREIVREI 78