Miyakogusa Predicted Gene
- Lj2g3v0547900.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v0547900.1 tr|D7L1W6|D7L1W6_ARALL SWIB complex BAF60b
domain-containing protein OS=Arabidopsis lyrata subsp.
ly,28.87,5e-18,SWIB/MDM2 domain,SWIB/MDM2 domain; GYF domain,GYF; no
description,NULL; seg,NULL; Plus-3,Plus-3; SWI,CUFF.34704.1
(797 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G08430.1 | Symbols: | SWIB/MDM2 domain;Plus-3;GYF | chr5:271... 342 6e-94
AT5G63700.1 | Symbols: | zinc ion binding;DNA binding | chr5:25... 259 4e-69
AT5G23480.1 | Symbols: | SWIB/MDM2 domain;Plus-3;GYF | chr5:791... 222 6e-58
AT2G16485.1 | Symbols: | nucleic acid binding;zinc ion binding;... 137 3e-32
AT3G51120.1 | Symbols: | DNA binding;zinc ion binding;nucleic a... 127 3e-29
AT2G18090.1 | Symbols: | PHD finger family protein / SWIB compl... 64 5e-10
AT3G19080.1 | Symbols: | SWIB complex BAF60b domain-containing ... 52 2e-06
AT1G49520.1 | Symbols: | SWIB complex BAF60b domain-containing ... 51 4e-06
AT2G35605.1 | Symbols: | SWIB/MDM2 domain superfamily protein |... 49 1e-05
>AT5G08430.1 | Symbols: | SWIB/MDM2 domain;Plus-3;GYF |
chr5:2716974-2720095 FORWARD LENGTH=553
Length = 553
Score = 342 bits (877), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 176/364 (48%), Positives = 246/364 (67%), Gaps = 16/364 (4%)
Query: 11 WIEEINGQVQXXXXXXXXXXXXXXEYNGWGSTSLIWFLDSIGKDTTNEIAQSEVANIISD 70
W+EE NG E+ GWGS LI FL S+GKDT+ I++ +V++ I+
Sbjct: 6 WVEEGNGSA--TSSRKRKARPKRFEFVGWGSRQLIEFLHSLGKDTSEMISRYDVSDTIAK 63
Query: 71 YVKHKNLLHPTKKKRIVCDEKLHSLFGRKSISRLKISDLLESHIAKNCEESXXXXXXXXX 130
Y+ + LL P+ KK++VCD++L LFG ++I R+K+ DLLE H +N ++S
Sbjct: 64 YISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFRMKVYDLLEKHYKENQDDSDFDFLYEDE 123
Query: 131 XXENFLATCEKTPKPTSLERKCQPKKPVIQKPRSCFAAINPFNIKLVYLKKSLVEELLND 190
+ EK K TS V++KPR FAAI NIKL+YL+KSLV+ELL
Sbjct: 124 P--QIICHSEKIAKRTS---------KVVKKPRGTFAAIVSDNIKLLYLRKSLVQELLKS 172
Query: 191 PESFENKVVGSFIRIRCDPNDYLQKNSHQLLQVTGIKKSSGGDGAIRLKASGFIKDISIH 250
P++FE K++GSF+RI+ DPNDYLQK +QL+QVTG+KK G D + L+ + ++KD+SI
Sbjct: 173 PDTFEGKMLGSFVRIKSDPNDYLQKYPYQLVQVTGVKKEHGTDDFL-LQVTNYVKDVSIS 231
Query: 251 MLSDDNFSEAECEDLHQRVKGGLLKRPMVVDMEQKARVLHEDITKHWLSKELALLENLIE 310
+LSDDNFS+ ECEDLHQR+K GLLK+P +V+ME+KA+ LH+D TKHWL +E+ LL+ LI+
Sbjct: 232 VLSDDNFSQEECEDLHQRIKNGLLKKPTIVEMEEKAKKLHKDQTKHWLGREIELLKRLID 291
Query: 311 RANEKGWRRELDEYLQRREKLQSPDEQERLLHEIPQVIADDL--ELESTTPDVADKKVEK 368
RANEKGWRREL EYL +RE LQ+PDEQ RLL E+P+VI ++L E ++P+ E+
Sbjct: 292 RANEKGWRRELSEYLDKRELLQNPDEQARLLREVPEVIGEELVQNPEVSSPEAHKSDNEQ 351
Query: 369 KLQD 372
+L +
Sbjct: 352 RLSE 355
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 38/53 (71%)
Query: 696 WHYRDPQGNIQGPFSISHLKRWSDACYFSPDFKVWKLGQSQDQAVLLEHVFSM 748
W Y+DPQG +QGPFS++ LK WSDA YF+ F+VW G+S + AVLL V +
Sbjct: 500 WLYKDPQGLVQGPFSLTQLKAWSDAEYFTKQFRVWMTGESMESAVLLTDVLRL 552
>AT5G63700.1 | Symbols: | zinc ion binding;DNA binding |
chr5:25493934-25497632 REVERSE LENGTH=602
Length = 602
Score = 259 bits (663), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 144/333 (43%), Positives = 211/333 (63%), Gaps = 17/333 (5%)
Query: 35 EYNGWGSTSLIWFLDSIGKDTTNEIAQSEVANIISDYVKHKNLLHPTKKKRIVCDEKLHS 94
E+ WGS LI FL SIG+DT ++Q V ++I Y++ KNLL KKK++ CDEKL+S
Sbjct: 258 EFIRWGSKPLIDFLTSIGEDTREAMSQHSVESVIRRYIREKNLLDREKKKKVHCDEKLYS 317
Query: 95 LFGRKSISRLKISDLLESHIAKNCEESX-----------XXXXXXXXXXENFLATCEKTP 143
+F +KSI++ +I LL +H+ +N ++ + + C+K
Sbjct: 318 IFRKKSINQKRIYTLLNTHLKENLDQVEYFTPLELGFIEKNEKRFSEKNDKVMMPCKKQK 377
Query: 144 KPTSLERKCQPKKPVIQKPRSC-FAAINPFNIKLVYLKKSLVEELLNDPESFENKVVGSF 202
+S + C+ K V + R+ FA IN N+KLVYL+KSLV ELL +SF +KVVGSF
Sbjct: 378 TESSDDEICE--KEVQPEMRATGFATINADNLKLVYLRKSLVLELLKQNDSFVDKVVGSF 435
Query: 203 IRIRCDPNDYLQKNSHQLLQVTGIKKSSGGDGAIRLKASGFIKDISIHMLSDDNFSEAEC 262
++++ P D++ ++Q+LQVTGIK + + L SG +SI L D + E E
Sbjct: 436 VKVKNGPRDFM---AYQILQVTGIKNADDQSEGVLLHVSGMASGVSISKLDDSDIREEEI 492
Query: 263 EDLHQRVKGGLLKRPMVVDMEQKARVLHEDITKHWLSKELALLENLIERANEKGWRRELD 322
+DL Q+V GLL++ VV+MEQKA+ LH DITKHW++++L +L+ I ANEKGWRREL+
Sbjct: 493 KDLKQKVMNGLLRQTTVVEMEQKAKALHYDITKHWIARQLNILQKRINCANEKGWRRELE 552
Query: 323 EYLQRREKLQSPDEQERLLHEIPQVIADDLELE 355
EYL++RE L+ P EQERLL EIP++I D +E++
Sbjct: 553 EYLEQRELLEKPSEQERLLKEIPRIIEDFIEIK 585
>AT5G23480.1 | Symbols: | SWIB/MDM2 domain;Plus-3;GYF |
chr5:7916314-7919155 FORWARD LENGTH=570
Length = 570
Score = 222 bits (566), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 130/322 (40%), Positives = 188/322 (58%), Gaps = 55/322 (17%)
Query: 35 EYNGWGSTSLIWFLDSIGKDTTNEIAQSEVANIISDYVKHKNLLHPTKKKR----IVCDE 90
E+ GWGS +LI FL+S+G+DTTN+I++++V II +Y++ K+ P K K+ + CDE
Sbjct: 23 EFVGWGSRNLIEFLESLGRDTTNKISENDVTAIIMNYIREKSRETPLKSKKRRKTVACDE 82
Query: 91 KLHSLFGRKSISRLKISDLLESHIAKNCEESXXXXXXXXXXXENFLATCEKTPKPTSLER 150
KL LFG I+ +K+ DL+E H +N EE ++ A+ + + SL
Sbjct: 83 KLRLLFGAGKINVIKVPDLVEKHYVENQEEDLFY--------DDLYASEDDKQQRLSLSD 134
Query: 151 K-CQPKKPVIQKPRSCFAAINPFNIKLVYLKKSLVEELLNDPESFENKVVGSFIRIRCDP 209
K + K V+ KPR FAAI +KL+YL+KSLV+EL PE+FE+KVV +F+RI
Sbjct: 135 KVAKQTKQVVSKPRGTFAAIVRDTVKLLYLRKSLVQELAKTPETFESKVVRTFVRI---- 190
Query: 210 NDYLQKNSHQLLQVTGIKKSSGGDGAIR--LKASGFIKDISIHMLSDDNFSEAECEDLHQ 267
KN QL+ VTG+K+ DG + S ++KD++ LSDD+FS+ ECE+LHQ
Sbjct: 191 -----KNPCQLVHVTGVKEGDPIDGNLFQVTNYSYYLKDVTTSSLSDDDFSQEECEELHQ 245
Query: 268 RVKGGLLKRPMVVDMEQKARVLHEDITKHWLSKELALLENLIERANEKGWRRELDEYLQR 327
R+ G KR VVDME+KAR LHED YL++
Sbjct: 246 RINNGFAKRLTVVDMEEKARSLHED-------------------------------YLEK 274
Query: 328 REKLQSPDEQERLLHEIPQVIA 349
RE LQ+PDEQ+RL+ E+P+++A
Sbjct: 275 RELLQNPDEQKRLVDEVPEIVA 296
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 37/58 (63%), Gaps = 5/58 (8%)
Query: 692 QSMIWHYRDPQGNIQGPFSISHLKRWSDACYF--SPDFKVWKLGQSQDQAVLLEHVFS 747
+ ++W Y P+G GPFS++ LK WSD YF PDFKVWK G+S AVLL + S
Sbjct: 512 KKVMWFYEYPKGKTHGPFSLTDLKTWSDEEYFVGVPDFKVWKTGES---AVLLTKLLS 566
>AT2G16485.1 | Symbols: | nucleic acid binding;zinc ion binding;DNA
binding | chr2:7137269-7145222 REVERSE LENGTH=1773
Length = 1773
Score = 137 bits (345), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 174/344 (50%), Gaps = 35/344 (10%)
Query: 39 WGSTSLIWFLDSIGKDTTNEIAQSEVANIISDYVKHKNLLHPTKKKRIVCDEKLHSLFGR 98
W S L+ + + + + + EV ++ Y+K NL P +K +++CD +L +LFG+
Sbjct: 807 WASKELLDLVVHMRRGDRSFLPMLEVQTLLLAYIKRYNLRDPRRKSQVICDSRLQNLFGK 866
Query: 99 KSISRLKISDLLESHIAKNCEESXXXXXXXXXXXE--NFLATCEKTPKPTSLERKCQPKK 156
+ ++ +LL+SH K + E N + E P + + K
Sbjct: 867 SHVGHFEMLNLLDSHFLKKEQNQADDIQGDIVDTEEPNHVDVDENLDHPVKSGKDKKRKT 926
Query: 157 PVI------QKPRSCFAAINPFNIKLVYLKKSLVEELLNDPESFENKVVGSFIRIRCDPN 210
Q FAA++ NI L+YL++SLVE+LL D +FE KV +F+R+R N
Sbjct: 927 RKKNVRKGRQSNLDDFAAVDMHNINLIYLRRSLVEDLLEDSTAFEEKVASAFVRLRISGN 986
Query: 211 DYLQKNSHQLLQVTGIKKSSGGDGAIRLKASGFIKDI---------SIHMLSDDNFSEAE 261
+++ ++L+QV G K+ + K + ++ +I SI ++S+ +F+E E
Sbjct: 987 Q--KQDLYRLVQVVGTSKAPE-PYKVGKKTTDYVLEILNLDKTEVISIDIISNQDFTEDE 1043
Query: 262 CEDLHQRVKGGLLKRPMVVDMEQKARVLHEDITKHWLSKELALLENLIERANEKGWRRE- 320
C+ L Q +K GL+ R V D+++KA L E K+ L E+ +L +RA++ G R+E
Sbjct: 1044 CKRLKQSIKCGLINRLTVGDIQEKAIALQEVRVKNLLEAEILRFSHLRDRASDMGRRKEY 1103
Query: 321 --------------LDEYLQRREKLQSPDEQERLLHEIPQVIAD 350
L E +++ + L+SP+E++R L EIP++ AD
Sbjct: 1104 PYLLKLSNSLTMLTLRECVEKLQLLKSPEERQRRLEEIPEIHAD 1147
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 695 IWHYRDPQGNIQGPFSISHLKRWSDACYFSPDFKVWKLGQSQDQAVLLEHVFSMFSEKLT 754
IWHY+DP G +QGPFS++ L++W++ YF ++WK +S +VLL + +K T
Sbjct: 1309 IWHYKDPSGKVQGPFSMAQLRKWNNTGYFPAKLEIWKANESPLDSVLLTDALAGLFQKQT 1368
Query: 755 RLRTCWLMKAHRVSIGLHAVHDPP 778
+ MKA + + P
Sbjct: 1369 QAVDNSYMKAQVAAFSGQSSQSEP 1392
>AT3G51120.1 | Symbols: | DNA binding;zinc ion binding;nucleic acid
binding;nucleic acid binding | chr3:18986026-18991886
REVERSE LENGTH=1292
Length = 1292
Score = 127 bits (319), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 97/325 (29%), Positives = 163/325 (50%), Gaps = 27/325 (8%)
Query: 39 WGSTSLIWFLDSIGKDTTNEIAQSEVANIISDYVKHKNLLHPTKKKRIVCDEKLHSLFGR 98
W + L+ F+ + T+ ++Q +V ++ DY+K KNL P +K +++CD+ L LFG+
Sbjct: 319 WATKELLEFVSFMKNGDTSVLSQFDVQGLLLDYIKKKNLRDPLQKSQVLCDQMLVKLFGK 378
Query: 99 KSISRLKISDLLESHI-----AKNCEESXXXXXXXXXXXENFLATCEKTPKPTSLERKCQ 153
+ + ++ LLESH+ K + + + + + + + +
Sbjct: 379 QRVGHFEMLKLLESHVLIQEKPKGAKTTNGETTHAVPSQIEEDSVHDPMVRDRRRKMRRK 438
Query: 154 PKKPVIQKPRSCFAAINPFNIKLVYLKKSLVEELLNDPESFENKVVGSFIRIRCDPNDYL 213
V + +AAI+ NI L+YL++ +E LL+D + KVVG+ +RI+ +D
Sbjct: 439 TDGRVQNENLDAYAAIDVHNINLIYLRRKFLESLLDDINKVDEKVVGTILRIKVSGSDQ- 497
Query: 214 QKNSHQLLQVTGIKKS--SGGDGA----IRLKASGFIKD--ISIHMLSDDNFSEAECEDL 265
+ + H+L+QV G K+ S GA + L+ K ISI LSD N +E EC+ L
Sbjct: 498 KLDIHRLVQVVGTSKAIASYQLGAKTTDVMLEILNLDKREVISIDQLSDQNITEDECKRL 557
Query: 266 HQRVKGGLLKRPMVVDMEQKARVLHEDITKHWLSKELALLENLIERANEKGWRRELDEYL 325
Q +K GL KR VVD+ + A L L E+ L +L +RA
Sbjct: 558 RQSIKCGLNKRLTVVDILKTAATLQAMRINEALEAEILKLNHLRDRA------------- 604
Query: 326 QRREKLQSPDEQERLLHEIPQVIAD 350
++ E L+SP+E++RLL E+P+V D
Sbjct: 605 KKLELLKSPEERQRLLQEVPEVHTD 629
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 43/68 (63%)
Query: 689 DQLQSMIWHYRDPQGNIQGPFSISHLKRWSDACYFSPDFKVWKLGQSQDQAVLLEHVFSM 748
D +S IWHYRDP G QGPFS+ L+RW + +F P ++W+ ++QD++VLL +
Sbjct: 712 DDEESEIWHYRDPTGKTQGPFSMVQLRRWKSSGHFPPYLRIWRAHENQDESVLLTDALAG 771
Query: 749 FSEKLTRL 756
+K T L
Sbjct: 772 RFDKATTL 779
>AT2G18090.1 | Symbols: | PHD finger family protein / SWIB complex
BAF60b domain-containing protein / GYF domain-containing
protein | chr2:7864501-7867317 FORWARD LENGTH=824
Length = 824
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 680 SMMLATDTADQLQS-MIWHYRDPQGNIQGPFSISHLKRWSDACYFSPDFKVWKLGQSQDQ 738
S L+ D L + M+W Y DP G I GPFS+ +L++W+ + +F P+ ++W+LG+ Q
Sbjct: 442 SATLSNKPIDGLDTNMVWLYGDPDGKIHGPFSLYNLRQWNSSGHFPPELRIWRLGEQQHS 501
Query: 739 AVLL 742
++LL
Sbjct: 502 SILL 505
>AT3G19080.1 | Symbols: | SWIB complex BAF60b domain-containing
protein | chr3:6596082-6598667 FORWARD LENGTH=462
Length = 462
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 41 STSLIWFLDSIGKDTTNEIAQSEVANIISDYVKHKNLLHPTKKKRIVCDEKLHSLFGRKS 100
S +L+ FL D N +++++V + +Y+ H +L P+ K+R++CDEKL LF S
Sbjct: 388 SDALVKFLG----DGENSLSRADVVKRLWEYINHNDLQDPSDKRRVICDEKLKELFEVDS 443
Query: 101 ISRLKISDLLESHIAK 116
+S LL +H K
Sbjct: 444 FEDTSVSKLLTNHFIK 459
>AT1G49520.1 | Symbols: | SWIB complex BAF60b domain-containing
protein | chr1:18329736-18331691 FORWARD LENGTH=372
Length = 372
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 39/59 (66%)
Query: 56 TNEIAQSEVANIISDYVKHKNLLHPTKKKRIVCDEKLHSLFGRKSISRLKISDLLESHI 114
T+++A++EV + Y++ +L PT ++ I+CDE LHSLF K+I+ +++ L HI
Sbjct: 118 TSQLARTEVVKKMWAYIREHDLQDPTNRRNILCDESLHSLFRVKTINMFQMNKALAKHI 176
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 38/59 (64%)
Query: 56 TNEIAQSEVANIISDYVKHKNLLHPTKKKRIVCDEKLHSLFGRKSISRLKISDLLESHI 114
T ++A++EV ++ Y+K NL P+ K+ I+CDE L SLF +SI+ +++ L HI
Sbjct: 267 TPQLARTEVVKMLWKYIKENNLQDPSDKRTIICDESLRSLFPVESINMFQMNKQLAKHI 325
>AT2G35605.1 | Symbols: | SWIB/MDM2 domain superfamily protein |
chr2:14946161-14947027 FORWARD LENGTH=109
Length = 109
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 57 NEIAQSEVANIISDYVKHKNLLHPTKKKRIVCDEKLHSLF-GRKSISRLKISDLLESHIA 115
NE++++ I +Y+K NL +P K+ I+CDE+L ++F G+ ++ L+IS LL H
Sbjct: 47 NEVSRTTAVKKIWEYIKLNNLQNPVNKREILCDEQLKTIFSGKDTVGFLEISKLLSQHFP 106
Query: 116 KNC 118
K+
Sbjct: 107 KSA 109