Miyakogusa Predicted Gene

Lj2g3v0533560.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0533560.1 Non Chatacterized Hit- tr|A9P0S0|A9P0S0_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,37.78,5e-18,RNA-binding domain, RBD,NULL; RRM_1,RNA recognition
motif domain; no description,Nucleotide-binding,,CUFF.34681.1
         (185 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G27050.1 | Symbols: ATHB54, HB54 | homeobox protein 54 | chr1...   166   8e-42

>AT1G27050.1 | Symbols: ATHB54, HB54 | homeobox protein 54 |
           chr1:9393706-9394408 FORWARD LENGTH=205
          Length = 205

 Score =  166 bits (420), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 95/205 (46%), Positives = 126/205 (61%), Gaps = 20/205 (9%)

Query: 1   MSRKRDRPNVSRQASK---------XXXXXXXXXXXXXXXXXXXXXXALVVMGLPIDCSV 51
           MSRKRD+P  +R                                   ALVVMGLP +CSV
Sbjct: 1   MSRKRDKPYTNRHTPARISKRRRPWAPSSSEHDEIIDKPITKPPPPPALVVMGLPANCSV 60

Query: 52  LDLKSRFEIYGAISRIRIDRDAVGYITYRSKDSADAAIAAGVDPSFGITVNSKKVQVLWA 111
           L+LKSRFEIYG+ISRIRI +D +G ++YR+ +SA+AAIA   +PSFGI+++SKK++V+WA
Sbjct: 61  LELKSRFEIYGSISRIRIHKDGIGSVSYRTAESAEAAIAGSHEPSFGISIDSKKLEVVWA 120

Query: 112 TDPLAMWREGV--GNNKDKSS--MSKLVRAEVPLRRHGRGNRLASSI-----GNTKSIQD 162
           TDPL  W+EGV  G  K+++S   SKL+R  +PLR+HGR +RLAS+I      NTK I  
Sbjct: 121 TDPLVKWKEGVTAGEGKERTSSFSSKLLRPVMPLRKHGRSSRLASAIVNPRSDNTKGISG 180

Query: 163 RLGTS--VLEAPFRGREIVAYDDIL 185
             G S     +  + R IV YDDI+
Sbjct: 181 DGGISSPATTSEVKQRNIVTYDDIV 205