Miyakogusa Predicted Gene

Lj2g3v0523450.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0523450.1 tr|G7KHS6|G7KHS6_MEDTR 4,5-DOPA dioxygenase
extradiol-like protein OS=Medicago truncatula
GN=MTR_6g0,72.41,1e-16,LigB,Extradiol ring-cleavage dioxygenase, class
III enzyme, subunit B; LigB subunit of an aromatic-r,CUFF.34670.1
         (267 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G15093.1 | Symbols:  | catalytic LigB subunit of aromatic rin...   362   e-100

>AT4G15093.1 | Symbols:  | catalytic LigB subunit of aromatic
           ring-opening dioxygenase family | chr4:8618454-8619472
           FORWARD LENGTH=269
          Length = 269

 Score =  362 bits (930), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 173/256 (67%), Positives = 212/256 (82%), Gaps = 4/256 (1%)

Query: 3   LKDTFYISHGSPTLSIDESLVARKFLQSWKKEVFPPRPTSILVISGHWDTAVPTVNVVDS 62
           +  TF++SHGSPTLSID+SL AR+F +SW ++V P +P SILVIS HWDT  P+VN V  
Sbjct: 4   VNQTFFLSHGSPTLSIDDSLEARQFFKSWTQKVLPQKPKSILVISAHWDTKFPSVNTV-L 62

Query: 63  TNDTIYDFYGFPKPMYQLKYPAPGAPHLAKRVKELL-KEGGFSRVDEDKKRGLDHGAWVP 121
            N+TI+DF GFP PMY+LKY APGA  L KRVKELL KEGG  RVDED KRGLDHGAWVP
Sbjct: 63  RNNTIHDFSGFPDPMYKLKYEAPGAIELGKRVKELLMKEGGMKRVDEDTKRGLDHGAWVP 122

Query: 122 LLLMYPEADIPVCQLSVQSNLDGTHHYNIGKALAPLKDEGVLIVGSGSAVHNLRALERHA 181
           L+LMYPEADIP+CQLSVQSN +G++HYN+GKALA LKDEGVLI+GSGSA HNLR L+ + 
Sbjct: 123 LMLMYPEADIPICQLSVQSNQNGSYHYNMGKALASLKDEGVLIIGSGSATHNLRKLDFNI 182

Query: 182 TVAA--PWAVEFDNWLKEALLEGRYEDVNHYEQKAPHAKKAHPWPDHFYPLHVAIGAAGE 239
           T  +  PWA+EFD+WL+++LL+GRY DVN +E+KAP+AK AHPWP+H YPLHV +GAAG 
Sbjct: 183 TDGSPVPWALEFDHWLRDSLLQGRYGDVNEWEEKAPNAKMAHPWPEHLYPLHVVMGAAGG 242

Query: 240 NSKAKLIHSSIDLGSL 255
           ++KA+ IH+S  LG+L
Sbjct: 243 DAKAEQIHTSWQLGTL 258