Miyakogusa Predicted Gene

Lj2g3v0523330.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0523330.1 Non Chatacterized Hit- tr|I3SYT8|I3SYT8_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.34,0,seg,NULL;
LigB subunit of an aromatic-ring-opening dioxygenase LigAB,Extradiol
ring-cleavage dioxyge,CUFF.34701.1
         (304 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G15093.1 | Symbols:  | catalytic LigB subunit of aromatic rin...   352   2e-97

>AT4G15093.1 | Symbols:  | catalytic LigB subunit of aromatic
           ring-opening dioxygenase family | chr4:8618454-8619472
           FORWARD LENGTH=269
          Length = 269

 Score =  352 bits (902), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 167/255 (65%), Positives = 200/255 (78%), Gaps = 3/255 (1%)

Query: 40  LKETFYISHGSPTLAIDDSIPAWKFLNSWKEEVFPHRPSSILIISGHWDTHVPTVNAVDR 99
           + +TF++SHGSPTL+IDDS+ A +F  SW ++V P +P SIL+IS HWDT  P+VN V R
Sbjct: 4   VNQTFFLSHGSPTLSIDDSLEARQFFKSWTQKVLPQKPKSILVISAHWDTKFPSVNTVLR 63

Query: 100 NDTIYDFYGFPKNMYKLKYPAPGAPHLAKRVKELLTASG-FSRVDEDRKRGLDHGAWVPL 158
           N+TI+DF GFP  MYKLKY APGA  L KRVKELL   G   RVDED KRGLDHGAWVPL
Sbjct: 64  NNTIHDFSGFPDPMYKLKYEAPGAIELGKRVKELLMKEGGMKRVDEDTKRGLDHGAWVPL 123

Query: 159 MLMYPDADIPVCQLSVSSSMGGTYHYEMGKALAPLKDEGVLIIGSGSATHNLRAI--GPR 216
           MLMYP+ADIP+CQLSV S+  G+YHY MGKALA LKDEGVLIIGSGSATHNLR +     
Sbjct: 124 MLMYPEADIPICQLSVQSNQNGSYHYNMGKALASLKDEGVLIIGSGSATHNLRKLDFNIT 183

Query: 217 NSPPPPWAVDFMSWLKSSLLHGRYEEVNQYEEKAPYAKMAHPWPDHFFPLHVAMGAAGEN 276
           +  P PWA++F  WL+ SLL GRY +VN++EEKAP AKMAHPWP+H +PLHV MGAAG +
Sbjct: 184 DGSPVPWALEFDHWLRDSLLQGRYGDVNEWEEKAPNAKMAHPWPEHLYPLHVVMGAAGGD 243

Query: 277 AKAKVVHDSWDGGSI 291
           AKA+ +H SW  G++
Sbjct: 244 AKAEQIHTSWQLGTL 258