Miyakogusa Predicted Gene

Lj2g3v0521160.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0521160.1 tr|F0SFV6|F0SFV6_PLABD Class I peptide chain
release factor OS=Planctomyces brasiliensis (strain
ATC,36.47,1e-18,PEPTIDYL-TRNA HYDROLASE DOMAIN PROTEIN,NULL; PEPTIDE
CHAIN RELEASE FACTOR,NULL; RF-1,Peptide chain r,CUFF.34649.1
         (317 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G33330.1 | Symbols:  | Class I peptide chain release factor |...   216   2e-56
AT1G56350.1 | Symbols:  | Peptide chain release factor 2 | chr1:...    58   8e-09
AT2G47020.1 | Symbols:  | Peptide chain release factor 1 | chr2:...    54   2e-07
AT2G47020.2 | Symbols:  | Peptide chain release factor 1 | chr2:...    50   2e-06

>AT1G33330.1 | Symbols:  | Class I peptide chain release factor |
           chr1:12084968-12086238 FORWARD LENGTH=257
          Length = 257

 Score =  216 bits (550), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 106/173 (61%), Positives = 128/173 (73%), Gaps = 1/173 (0%)

Query: 145 YLELTDDELMRQCEMGTFKSSGPGGQHRNKRESSVRIKHLPTGVIAQASEDRSQHKNXXX 204
           YL+ TD+ELM+QC + TF+ SGPGGQHRNKR+S+VR+KHLPTG++AQA EDRSQHKN   
Sbjct: 86  YLKFTDEELMKQCRLETFRVSGPGGQHRNKRDSAVRLKHLPTGIVAQAVEDRSQHKNRAS 145

Query: 205 XXXXXXXXXXXKVRKTVDLDAYSPPRELLQILPPKSSIRGSDIGSQIGPNNSKFAMGMQA 264
                      KVR  VD++AY+PP ELLQILPPKS+IR S  GSQIGPNN KF  GMQA
Sbjct: 146 ALNRLRTLLAIKVRNKVDIEAYAPPPELLQILPPKSTIRTSS-GSQIGPNNPKFVPGMQA 204

Query: 265 LLDLIFAVEGSISEAAKYLGLSTGAXXXXXXXXXXXXMEVNSLRASKGMKPLK 317
           LLD+I A +GSI+++AK LGLSTG             M VNS+RA+KG+KPLK
Sbjct: 205 LLDVISASDGSIADSAKLLGLSTGGLSRLILSHDGLRMAVNSMRAAKGIKPLK 257


>AT1G56350.1 | Symbols:  | Peptide chain release factor 2 |
           chr1:21094840-21097826 FORWARD LENGTH=482
          Length = 482

 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 6/63 (9%)

Query: 139 DGSARGYLELTDDELMRQCEMGTFKSSGPGGQHRNKRESSVRIKHLPTGVIAQASEDRSQ 198
           DGS R  +E+ D +L     +  F+S G GGQH N  +S+VRI H+PTG+ A    +RSQ
Sbjct: 336 DGSTR--VEINDSDL----RIERFRSGGAGGQHANTTDSAVRIVHIPTGITATCQNERSQ 389

Query: 199 HKN 201
           H N
Sbjct: 390 HSN 392


>AT2G47020.1 | Symbols:  | Peptide chain release factor 1 |
           chr2:19320090-19322279 REVERSE LENGTH=413
          Length = 413

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 14/91 (15%)

Query: 159 MGTFKSSGPGGQHRNKRESSVRIKHLPTGVIAQASEDRSQHKNXXXXXXXXXXXXXXKVR 218
           + T++S G GGQH N   S+VRI HLPTG++    ++RSQH N              K  
Sbjct: 276 IDTYRSGGSGGQHANTTNSAVRIIHLPTGMMVSIQDERSQHMN------------RAKAL 323

Query: 219 KTVDLDAYSPPRELLQILPPKSSIRGSDIGS 249
           K +    Y   R  L+I   +S +R   IGS
Sbjct: 324 KVLCARLYEIER--LRIQSSRSKLRSDQIGS 352


>AT2G47020.2 | Symbols:  | Peptide chain release factor 1 |
           chr2:19320439-19322002 REVERSE LENGTH=256
          Length = 256

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 29/41 (70%)

Query: 159 MGTFKSSGPGGQHRNKRESSVRIKHLPTGVIAQASEDRSQH 199
           + T++S G GGQH N   S+VRI HLPTG++    ++RSQH
Sbjct: 211 IDTYRSGGSGGQHANTTNSAVRIIHLPTGMMVSIQDERSQH 251