Miyakogusa Predicted Gene
- Lj2g3v0509060.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v0509060.1 Non Chatacterized Hit- tr|I1NIC8|I1NIC8_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.55161
PE,85.42,0,seg,NULL; Chlorophyll a-b binding protein,Chlorophyll a/b
binding protein domain; SUBFAMILY NOT NAME,CUFF.35284.1
(280 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G10340.1 | Symbols: LHCB5 | light harvesting complex of photo... 424 e-119
AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | chlorophyll A/B-bi... 191 5e-49
AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | chlorophyll A/B bi... 191 5e-49
AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyl... 191 5e-49
AT2G05070.1 | Symbols: LHCB2.2, LHCB2 | photosystem II light har... 190 1e-48
AT2G05100.1 | Symbols: LHCB2.1, LHCB2 | photosystem II light har... 189 1e-48
AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | light-harvesting chloro... 189 3e-48
AT3G27690.1 | Symbols: LHCB2.4, LHCB2.3, LHCB2 | photosystem II ... 188 3e-48
AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | photosystem II light ha... 188 4e-48
AT5G54270.1 | Symbols: LHCB3, LHCB3*1 | light-harvesting chlorop... 180 1e-45
AT1G76570.1 | Symbols: | Chlorophyll A-B binding family protein... 153 1e-37
AT3G54890.1 | Symbols: LHCA1 | photosystem I light harvesting co... 145 2e-35
AT1G45474.2 | Symbols: LHCA5 | photosystem I light harvesting co... 129 2e-30
AT1G45474.1 | Symbols: LHCA5 | photosystem I light harvesting co... 129 2e-30
AT3G08940.2 | Symbols: LHCB4.2 | light harvesting complex photos... 120 1e-27
AT5G01530.1 | Symbols: LHCB4.1 | light harvesting complex photos... 117 1e-26
AT1G61520.3 | Symbols: LHCA3 | photosystem I light harvesting co... 115 3e-26
AT1G61520.1 | Symbols: LHCA3 | photosystem I light harvesting co... 115 3e-26
AT3G47470.1 | Symbols: LHCA4, CAB4 | light-harvesting chlorophyl... 113 1e-25
AT1G19150.1 | Symbols: LHCA6, LHCA2*1 | photosystem I light harv... 113 1e-25
AT3G61470.1 | Symbols: LHCA2 | photosystem I light harvesting co... 112 2e-25
AT3G54890.4 | Symbols: LHCA1 | photosystem I light harvesting co... 112 4e-25
AT1G61520.2 | Symbols: LHCA3 | photosystem I light harvesting co... 108 4e-24
AT3G54890.2 | Symbols: LHCA1 | photosystem I light harvesting co... 107 7e-24
AT2G40100.1 | Symbols: LHCB4.3 | light harvesting complex photos... 102 2e-22
AT1G15820.1 | Symbols: LHCB6, CP24 | light harvesting complex ph... 77 1e-14
AT3G54890.3 | Symbols: LHCA1 | photosystem I light harvesting co... 75 5e-14
AT5G28450.1 | Symbols: | Chlorophyll A-B binding family protein... 62 3e-10
>AT4G10340.1 | Symbols: LHCB5 | light harvesting complex of
photosystem II 5 | chr4:6408200-6409496 FORWARD
LENGTH=280
Length = 280
Score = 424 bits (1090), Expect = e-119, Method: Compositional matrix adjust.
Identities = 221/281 (78%), Positives = 228/281 (81%), Gaps = 2/281 (0%)
Query: 1 MASLGMSEMLGNAINFGGATRXXXXXXXXX-TFKTVALFSXXXXXXXXXXXXXXXXDEEL 59
MASLG+SEMLG +NF +R TFKTVALFS DE L
Sbjct: 1 MASLGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPAPAKSKAVSETSDE-L 59
Query: 60 AKWYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHAR 119
AKWYGPDRRIFLPDGLLDRSEIPEYL GEV GDYGYDPFGLGKKPE+FAKYQAFELIHAR
Sbjct: 60 AKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHAR 119
Query: 120 WAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKPIPINXXXXXXXXX 179
WAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGK IPIN
Sbjct: 120 WAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEV 179
Query: 180 XXXXXXXYYRITNGLDFEDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFSMLGF 239
YYRITNGLDFEDKLHPGGPFDPLGLAKDP+Q ALLKVKEIKNGRLAMF+MLGF
Sbjct: 180 VLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGF 239
Query: 240 FIQAYVTGDGPVENLAKHLSDPFGNNLLTVIAGNAERAPTL 280
FIQAYVTG+GPVENLAKHLSDPFGNNLLTVIAG AERAPTL
Sbjct: 240 FIQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGTAERAPTL 280
>AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | chlorophyll
A/B-binding protein 2 | chr1:10475089-10475892 REVERSE
LENGTH=267
Length = 267
Score = 191 bits (485), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 107/210 (50%), Positives = 128/210 (60%), Gaps = 10/210 (4%)
Query: 62 WYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHARWA 121
WYG DR +L E P YLTGE PGDYG+D GL PE FA+ + E+IH+RWA
Sbjct: 50 WYGSDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 106
Query: 122 MLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKPIPINXXXXXXXXXXX 181
MLGA G + PE L + G G EAVWFK G+ + L+Y G P ++
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 165
Query: 182 XXXXXY---YRIT-NGL--DFEDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFS 235
YR+ NG + ED L+PGG FDPLGLA DP+ A LKVKE+KNGRLAMFS
Sbjct: 166 VILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFS 225
Query: 236 MLGFFIQAYVTGDGPVENLAKHLSDPFGNN 265
M GFF+QA VTG GP+ENLA HL+DP NN
Sbjct: 226 MFGFFVQAIVTGKGPIENLADHLADPVNNN 255
>AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | chlorophyll A/B
binding protein 3 | chr1:10472443-10473246 REVERSE
LENGTH=267
Length = 267
Score = 191 bits (485), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 107/210 (50%), Positives = 128/210 (60%), Gaps = 10/210 (4%)
Query: 62 WYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHARWA 121
WYG DR +L E P YLTGE PGDYG+D GL PE FA+ + E+IH+RWA
Sbjct: 50 WYGSDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 106
Query: 122 MLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKPIPINXXXXXXXXXXX 181
MLGA G + PE L + G G EAVWFK G+ + L+Y G P ++
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 165
Query: 182 XXXXXY---YRIT-NGL--DFEDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFS 235
YR+ NG + ED L+PGG FDPLGLA DP+ A LKVKE+KNGRLAMFS
Sbjct: 166 VILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFS 225
Query: 236 MLGFFIQAYVTGDGPVENLAKHLSDPFGNN 265
M GFF+QA VTG GP+ENLA HL+DP NN
Sbjct: 226 MFGFFVQAIVTGKGPIENLADHLADPVNNN 255
>AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll
A/B binding protein 1 | chr1:10478071-10478874 FORWARD
LENGTH=267
Length = 267
Score = 191 bits (485), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 107/210 (50%), Positives = 128/210 (60%), Gaps = 10/210 (4%)
Query: 62 WYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHARWA 121
WYG DR +L E P YLTGE PGDYG+D GL PE FA+ + E+IH+RWA
Sbjct: 50 WYGSDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 106
Query: 122 MLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKPIPINXXXXXXXXXXX 181
MLGA G + PE L + G G EAVWFK G+ + L+Y G P ++
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 165
Query: 182 XXXXXY---YRIT-NGL--DFEDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFS 235
YR+ NG + ED L+PGG FDPLGLA DP+ A LKVKE+KNGRLAMFS
Sbjct: 166 VILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFS 225
Query: 236 MLGFFIQAYVTGDGPVENLAKHLSDPFGNN 265
M GFF+QA VTG GP+ENLA HL+DP NN
Sbjct: 226 MFGFFVQAIVTGKGPIENLADHLADPVNNN 255
>AT2G05070.1 | Symbols: LHCB2.2, LHCB2 | photosystem II light
harvesting complex gene 2.2 | chr2:1799436-1800329
REVERSE LENGTH=265
Length = 265
Score = 190 bits (482), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 110/210 (52%), Positives = 128/210 (60%), Gaps = 11/210 (5%)
Query: 62 WYGPDRRIFLPDGLLDRSE-IPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHARW 120
WYGPDR P L SE P YLTGE PGDYG+D GL PE FAK + E+IH+RW
Sbjct: 49 WYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRW 104
Query: 121 AMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKPIPINXXXXXXXXXX 180
AMLGA G PE L+K G G EAVWFK G+ + L+Y G P I+
Sbjct: 105 AMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAV 163
Query: 181 XXXXXXY---YRITNGLDFE--DKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFS 235
+ YRI G E D L+PGG FDPL LA+DP+ + LKVKE+KNGRLAMFS
Sbjct: 164 QVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFS 223
Query: 236 MLGFFIQAYVTGDGPVENLAKHLSDPFGNN 265
M GFF+QA VTG GP+ENL HL+DP NN
Sbjct: 224 MFGFFVQAIVTGKGPIENLFDHLADPVANN 253
>AT2G05100.1 | Symbols: LHCB2.1, LHCB2 | photosystem II light
harvesting complex gene 2.1 | chr2:1823449-1824331
REVERSE LENGTH=265
Length = 265
Score = 189 bits (481), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 110/210 (52%), Positives = 128/210 (60%), Gaps = 11/210 (5%)
Query: 62 WYGPDRRIFLPDGLLDRSE-IPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHARW 120
WYGPDR P L SE P YLTGE PGDYG+D GL PE FAK + E+IH+RW
Sbjct: 49 WYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRW 104
Query: 121 AMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKPIPINXXXXXXXXXX 180
AMLGA G PE L+K G G EAVWFK G+ + L+Y G P I+
Sbjct: 105 AMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAV 163
Query: 181 XXXXXXY---YRITNGLDFE--DKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFS 235
+ YRI G E D L+PGG FDPL LA+DP+ + LKVKE+KNGRLAMFS
Sbjct: 164 QVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFS 223
Query: 236 MLGFFIQAYVTGDGPVENLAKHLSDPFGNN 265
M GFF+QA VTG GP+ENL HL+DP NN
Sbjct: 224 MFGFFVQAIVTGKGPIENLFDHLADPVANN 253
>AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | light-harvesting
chlorophyll-protein complex II subunit B1 |
chr2:14524818-14525618 FORWARD LENGTH=266
Length = 266
Score = 189 bits (479), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 105/210 (50%), Positives = 126/210 (60%), Gaps = 10/210 (4%)
Query: 62 WYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHARWA 121
WYG DR +L E P YLTGE PGDYG+D GL PE FA+ + E+IH+RWA
Sbjct: 49 WYGSDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 105
Query: 122 MLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKPIPINXXXXXXXXXXX 181
MLGA G + PE L + G G EAVWFK G+ + L+Y G P ++
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 164
Query: 182 XXXXXY---YRITNGL---DFEDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFS 235
YR+ + ED L+PGG FDPLGLA DP+ A LKVKE+KNGRLAMFS
Sbjct: 165 VILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFS 224
Query: 236 MLGFFIQAYVTGDGPVENLAKHLSDPFGNN 265
M GFF+QA VTG GP+ENLA HL+DP NN
Sbjct: 225 MFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>AT3G27690.1 | Symbols: LHCB2.4, LHCB2.3, LHCB2 | photosystem II
light harvesting complex gene 2.3 |
chr3:10256002-10256921 FORWARD LENGTH=266
Length = 266
Score = 188 bits (478), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 109/210 (51%), Positives = 128/210 (60%), Gaps = 11/210 (5%)
Query: 62 WYGPDRRIFLPDGLLDRSE-IPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHARW 120
WYGPDR P L SE P YLTGE PGDYG+D GL PE FAK + E+IH+RW
Sbjct: 50 WYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRW 105
Query: 121 AMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKPIPINXXXXXXXXXX 180
AMLGA G PE L+K G G EAVWFK G+ + L+Y G P I+
Sbjct: 106 AMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAC 164
Query: 181 XXXXXXY---YRITNGLDFE--DKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFS 235
+ YRI G E D L+PGG FDPL LA+DP+ + LKVKE+KNGRLAMFS
Sbjct: 165 QVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFS 224
Query: 236 MLGFFIQAYVTGDGPVENLAKHLSDPFGNN 265
M GFF+QA VTG GP+ENL H++DP NN
Sbjct: 225 MFGFFVQAIVTGKGPIENLFDHIADPVANN 254
>AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | photosystem II light
harvesting complex gene B1B2 | chr2:14522716-14523513
REVERSE LENGTH=265
Length = 265
Score = 188 bits (477), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 105/210 (50%), Positives = 126/210 (60%), Gaps = 10/210 (4%)
Query: 62 WYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHARWA 121
WYG DR +L E P YLTGE PGDYG+D GL PE FA+ + E+IH+RWA
Sbjct: 48 WYGSDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 104
Query: 122 MLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKPIPINXXXXXXXXXXX 181
MLGA G + PE L + G G EAVWFK G+ + L+Y G P ++
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 163
Query: 182 XXXXXY---YRITNGL---DFEDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFS 235
YR+ + ED L+PGG FDPLGLA DP+ A LKVKE+KNGRLAMFS
Sbjct: 164 VILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFS 223
Query: 236 MLGFFIQAYVTGDGPVENLAKHLSDPFGNN 265
M GFF+QA VTG GP+ENLA HL+DP NN
Sbjct: 224 MFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>AT5G54270.1 | Symbols: LHCB3, LHCB3*1 | light-harvesting
chlorophyll B-binding protein 3 | chr5:22038424-22039383
FORWARD LENGTH=265
Length = 265
Score = 180 bits (456), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 108/212 (50%), Positives = 126/212 (59%), Gaps = 13/212 (6%)
Query: 62 WYGPDRRIFL-PDGLLDRSEIPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHARW 120
WYGPDR +L P + + P YLTGE PGDYG+D GL PE FAK +A E+IH RW
Sbjct: 47 WYGPDRVKYLGPFSV----QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRW 102
Query: 121 AMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKPIPINXXXXXXXXXX 180
AMLGA G I PE L K+ E VWFK G+ + L+Y G P ++
Sbjct: 103 AMLGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGF 162
Query: 181 XXXXXXY---YRITNGLDFE---DKLHPGGP-FDPLGLAKDPDQAALLKVKEIKNGRLAM 233
+RI NGLD + L+PGG FDPLGLA DP A LKVKEIKNGRLAM
Sbjct: 163 QVILMGLVEGFRI-NGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAM 221
Query: 234 FSMLGFFIQAYVTGDGPVENLAKHLSDPFGNN 265
FSM GFF+QA VTG GP+ENL HL +P NN
Sbjct: 222 FSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 253
>AT1G76570.1 | Symbols: | Chlorophyll A-B binding family protein |
chr1:28729132-28730754 FORWARD LENGTH=327
Length = 327
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/226 (43%), Positives = 122/226 (53%), Gaps = 19/226 (8%)
Query: 60 AKWYGPDR-RIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHA 118
+KWYG +R R F P + P YLTGE+PGDYG+D GLGK F KY FE++HA
Sbjct: 104 SKWYGKERPRWFGPIPY----DYPPYLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHA 159
Query: 119 RWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKP----IPINXXXX 174
RWAML A G +IPE + G E VW++ G L G TL Y G P
Sbjct: 160 RWAMLAALGALIPEVFDLTGTFHFAEPVWWRVGYSKLQGETLEYLGIPGLHVAGSQGVIV 219
Query: 175 XXXXXXXXXXXXYYRITNGLDFEDKL---------HPGGP-FDPLGLAKDPDQAALLKVK 224
Y G++ + L +PGG FDPL L++DP LKVK
Sbjct: 220 IAICQVLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGTLFDPLNLSEDPVAFEDLKVK 279
Query: 225 EIKNGRLAMFSMLGFFIQAYVTGDGPVENLAKHLSDPFGNNLLTVI 270
EIKNGRLAM + LGF+ QA TG GPV+NL H+SDP NNL+ ++
Sbjct: 280 EIKNGRLAMVAWLGFYAQAAFTGKGPVQNLVDHVSDPLHNNLIAML 325
>AT3G54890.1 | Symbols: LHCA1 | photosystem I light harvesting
complex gene 1 | chr3:20339706-20340922 REVERSE
LENGTH=241
Length = 241
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 107/191 (56%), Gaps = 10/191 (5%)
Query: 82 PEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANC 141
P YL G PGD+G+DP GLG+ P + +Y+ ELIH RWAML G ++PEAL YG
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG-YGN-- 111
Query: 142 GPEAVWFKTGAL-LLDGNTLNYFGKPIPINXXXXXXXXXXXXXXXXYYRITNGLDFEDKL 200
W K L G Y G P+P ++ + D E K
Sbjct: 112 -----WVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKK 166
Query: 201 HPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFSMLGFFI-QAYVTGDGPVENLAKHLS 259
+PGG FDPLG +KDP + LKVKEIKNGRLA+ + +GF + Q+ G GP+ENLA HL+
Sbjct: 167 YPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 226
Query: 260 DPFGNNLLTVI 270
DP+ NN+ ++
Sbjct: 227 DPWHNNIGDIV 237
>AT1G45474.2 | Symbols: LHCA5 | photosystem I light harvesting
complex gene 5 | chr1:17179353-17180439 FORWARD
LENGTH=256
Length = 256
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 106/198 (53%), Gaps = 11/198 (5%)
Query: 82 PEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANC 141
P YL G + GDYG+DP GLG+ PE Y EL+H+R+AMLG AG + + L G
Sbjct: 56 PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRN 115
Query: 142 GPEAVWFKTGALLLDGNTLN--------YFGKPIPINXXXXXXXXXXXXXXXXYYRITNG 193
P VW++ GA+ D + G ++ +
Sbjct: 116 LP--VWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEAA 173
Query: 194 LDFEDKLHPGGPF-DPLGLAKDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYVTGDGPVE 252
L+ + +PGGP +PLGLAKD A K+KEIKNGRLAM +MLGFF+QA VT GP++
Sbjct: 174 LEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPID 233
Query: 253 NLAKHLSDPFGNNLLTVI 270
NL +HLS+P+ ++ +
Sbjct: 234 NLVEHLSNPWHKTIIQTL 251
>AT1G45474.1 | Symbols: LHCA5 | photosystem I light harvesting
complex gene 5 | chr1:17179353-17180439 FORWARD
LENGTH=256
Length = 256
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 106/198 (53%), Gaps = 11/198 (5%)
Query: 82 PEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANC 141
P YL G + GDYG+DP GLG+ PE Y EL+H+R+AMLG AG + + L G
Sbjct: 56 PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRN 115
Query: 142 GPEAVWFKTGALLLDGNTLN--------YFGKPIPINXXXXXXXXXXXXXXXXYYRITNG 193
P VW++ GA+ D + G ++ +
Sbjct: 116 LP--VWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEAA 173
Query: 194 LDFEDKLHPGGPF-DPLGLAKDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYVTGDGPVE 252
L+ + +PGGP +PLGLAKD A K+KEIKNGRLAM +MLGFF+QA VT GP++
Sbjct: 174 LEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPID 233
Query: 253 NLAKHLSDPFGNNLLTVI 270
NL +HLS+P+ ++ +
Sbjct: 234 NLVEHLSNPWHKTIIQTL 251
>AT3G08940.2 | Symbols: LHCB4.2 | light harvesting complex
photosystem II | chr3:2717717-2718665 FORWARD LENGTH=287
Length = 287
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 115/259 (44%), Gaps = 61/259 (23%)
Query: 60 AKWYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLGKKPE-------------- 105
AK DR ++ P ++ PEYL G + GDYG+DPFGLGK E
Sbjct: 45 AKTVISDRPLWFPG-----AKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLA 99
Query: 106 -----------------------------DFAKYQAFELIHARWAMLGAAGFIIPEALNK 136
+++ ELIH RWAML G I E L
Sbjct: 100 KNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTG 159
Query: 137 YGANCGPEAVWFKTGAL-LLDGNTLNYFGKPIPINXXXXXXXXXXXXXXXXYYRITNGLD 195
W G + L+DG++ Y G+P+P + + R LD
Sbjct: 160 --------VTWQDAGKVELVDGSS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAE-LD 208
Query: 196 FEDKLHPGGPF-DPLGLAKDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYVTGDGPVENL 254
E +L+PGG F DPLGLA DP + A L++ EIK+ RLAM LGF +QA TG GP+ N
Sbjct: 209 SEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNW 268
Query: 255 AKHLSDPFGNNLLTVIAGN 273
A HLSDP ++ + +
Sbjct: 269 ATHLSDPLHTTIIDTFSSS 287
>AT5G01530.1 | Symbols: LHCB4.1 | light harvesting complex
photosystem II | chr5:209084-210243 FORWARD LENGTH=290
Length = 290
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 114/253 (45%), Gaps = 61/253 (24%)
Query: 66 DRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLGKKPE-------------------- 105
DR ++ P + P++L G + GDYG+DPFGLGK E
Sbjct: 54 DRPLWYPGAI-----SPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGD 108
Query: 106 -----------------------DFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCG 142
+++ ELIH RWAML G + E L
Sbjct: 109 VIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTG------ 162
Query: 143 PEAVWFKTGAL-LLDGNTLNYFGKPIPINXXXXXXXXXXXXXXXXYYRITNGLDFEDKLH 201
W G + L+DG++ Y G+P+P + + R LD E +L+
Sbjct: 163 --VTWQDAGKVELVDGSS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAE-LDSEKRLY 217
Query: 202 PGGPF-DPLGLAKDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYVTGDGPVENLAKHLSD 260
PGG F DPLGLA DP++ A L++ EIK+ RLAM + LGF +QA TG GP+ N A HLSD
Sbjct: 218 PGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSD 277
Query: 261 PFGNNLLTVIAGN 273
P ++ + +
Sbjct: 278 PLHTTIIDTFSSS 290
>AT1G61520.3 | Symbols: LHCA3 | photosystem I light harvesting
complex gene 3 | chr1:22700152-22701149 FORWARD
LENGTH=273
Length = 273
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/213 (38%), Positives = 112/213 (52%), Gaps = 23/213 (10%)
Query: 79 SEIPEYLTGEVPGDYGYDPFGLGKKPEDFA-----KYQAF-ELIHARWAMLGAAGFIIPE 132
S+ YL G +PGDYG+DP GL PE ++ A+ E+I+ R+AMLGAAG I PE
Sbjct: 60 SQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPE 118
Query: 133 ALNKYGANCGPEAV-WFKTGALLLDGNTLNYFGKPIPI------------NXXXXXXXXX 179
L K G A+ WF+TG + G T Y+ + +
Sbjct: 119 ILGKAGLIPAETALPWFQTGVIPPAG-TYTYWADNYTLFVLEMALMGFAEHRRLQDWYNP 177
Query: 180 XXXXXXXYYRITNGLDFE-DKLHPGGPF-DPLGLAKDPDQAALLKVKEIKNGRLAMFSML 237
+ + GL + +PGGPF +PLG KD LK+KE+KNGRLAM ++L
Sbjct: 178 GSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAIL 237
Query: 238 GFFIQAYVTGDGPVENLAKHLSDPFGNNLLTVI 270
G+FIQ VTG GP +NL HL+DP NN+LT +
Sbjct: 238 GYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSL 270
>AT1G61520.1 | Symbols: LHCA3 | photosystem I light harvesting
complex gene 3 | chr1:22700152-22701149 FORWARD
LENGTH=273
Length = 273
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/213 (38%), Positives = 112/213 (52%), Gaps = 23/213 (10%)
Query: 79 SEIPEYLTGEVPGDYGYDPFGLGKKPEDFA-----KYQAF-ELIHARWAMLGAAGFIIPE 132
S+ YL G +PGDYG+DP GL PE ++ A+ E+I+ R+AMLGAAG I PE
Sbjct: 60 SQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPE 118
Query: 133 ALNKYGANCGPEAV-WFKTGALLLDGNTLNYFGKPIPI------------NXXXXXXXXX 179
L K G A+ WF+TG + G T Y+ + +
Sbjct: 119 ILGKAGLIPAETALPWFQTGVIPPAG-TYTYWADNYTLFVLEMALMGFAEHRRLQDWYNP 177
Query: 180 XXXXXXXYYRITNGLDFE-DKLHPGGPF-DPLGLAKDPDQAALLKVKEIKNGRLAMFSML 237
+ + GL + +PGGPF +PLG KD LK+KE+KNGRLAM ++L
Sbjct: 178 GSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAIL 237
Query: 238 GFFIQAYVTGDGPVENLAKHLSDPFGNNLLTVI 270
G+FIQ VTG GP +NL HL+DP NN+LT +
Sbjct: 238 GYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSL 270
>AT3G47470.1 | Symbols: LHCA4, CAB4 | light-harvesting
chlorophyll-protein complex I subunit A4 |
chr3:17493622-17494773 REVERSE LENGTH=251
Length = 251
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 98/192 (51%), Gaps = 14/192 (7%)
Query: 82 PEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANC 141
P+YLTG + GD G+DP GL + PE+ + EL++ RWAMLG AG ++PE K G
Sbjct: 64 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 123
Query: 142 GPE------AVWFKTGALLLDGNTLNYFGKPIPINXXXXXXXXXXXXXXXXYYRITNGLD 195
PE +F + + L + + I Y + G
Sbjct: 124 VPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKG-- 181
Query: 196 FEDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYVTGDGPVENLA 255
+ +PGG F+PL A P Q A K KE+ NGRLAM + LGF +Q VTG GP ENL
Sbjct: 182 --EVGYPGGIFNPLNFA--PTQEA--KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLL 235
Query: 256 KHLSDPFGNNLL 267
+HLSDP+ N ++
Sbjct: 236 QHLSDPWHNTIV 247
>AT1G19150.1 | Symbols: LHCA6, LHCA2*1 | photosystem I light
harvesting complex gene 6 | chr1:6612806-6613799 FORWARD
LENGTH=270
Length = 270
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 99/222 (44%), Gaps = 27/222 (12%)
Query: 65 PDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHARWAMLG 124
PDR ++ P S PE+L G +PGD+G+DP GLG P+ + ELIH+RWAML
Sbjct: 63 PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLA 117
Query: 125 AAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKPIPINXXXXXXXXXXXXXX 184
G IIPE L + G F D + YF +
Sbjct: 118 VTGIIIPECLERLG---------FIENFSWYDAGSREYFADSTTLFVAQMVLMGWAEGRR 168
Query: 185 XXYYRITNGLDFEDKL-----------HPGG-PFDPLGLAK-DPDQAALLKVKEIKNGRL 231
+D E K +PGG FD + + P+ +L+ KEIKNGRL
Sbjct: 169 WADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRL 228
Query: 232 AMFSMLGFFIQAYVTGDGPVENLAKHLSDPFGNNLLTVIAGN 273
AM + LGF QA T P+ENL HL+DP N+ + +
Sbjct: 229 AMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTSH 270
>AT3G61470.1 | Symbols: LHCA2 | photosystem I light harvesting
complex gene 2 | chr3:22745736-22747032 FORWARD
LENGTH=257
Length = 257
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 100/204 (49%), Gaps = 15/204 (7%)
Query: 65 PDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHARWAMLG 124
PDR I+ P S PE+L G +PGD+G+DP GL P+ E++H RWAMLG
Sbjct: 50 PDRPIWFPG-----STPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLG 104
Query: 125 AAGFIIPEALNKYGANCGPEAVWFKTG--ALLLDGNTLNYFGKPIPINXXXXXXXXXXXX 182
AAG IPE L K G P W+ G D TL + + I I
Sbjct: 105 AAGIFIPEFLTKIGILNTPS--WYTAGEQEYFTDKTTL-FVVELILIGWAEGRRWADIIK 161
Query: 183 XXXXYYRIT---NGLDFEDKLHPGG-PFDPLGLAK-DPDQAALLKVKEIKNGRLAMFSML 237
N L D +PGG FDPLG P + L+ KEIKNGRLAM +++
Sbjct: 162 PGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVM 221
Query: 238 GFFIQAYVTGDGPVENLAKHLSDP 261
G + Q TG GP++NL HL+DP
Sbjct: 222 GAWFQHIYTGTGPIDNLFAHLADP 245
>AT3G54890.4 | Symbols: LHCA1 | photosystem I light harvesting
complex gene 1 | chr3:20339881-20340922 REVERSE
LENGTH=213
Length = 213
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 83/165 (50%), Gaps = 11/165 (6%)
Query: 82 PEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANC 141
P YL G PGD+G+DP GLG+ P + +Y+ ELIH RWAML G ++PEAL YG
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG-YGN-- 111
Query: 142 GPEAVWFKTGAL-LLDGNTLNYFGKPIPINXXXXXXXXXXXXXXXXYYRITNGLDFEDKL 200
W K L G Y G P+P ++ + D E K
Sbjct: 112 -----WVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKK 166
Query: 201 HPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYV 245
+PGG FDPLG +KDP + LKVKEIKNG+ L F Q YV
Sbjct: 167 YPGGAFDPLGYSKDPKKLEELKVKEIKNGKHT--QQLTFLDQTYV 209
>AT1G61520.2 | Symbols: LHCA3 | photosystem I light harvesting
complex gene 3 | chr1:22700493-22701149 FORWARD
LENGTH=218
Length = 218
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 108/206 (52%), Gaps = 23/206 (11%)
Query: 86 TGEVPGDYGYDPFGLGKKPEDFA-----KYQAF-ELIHARWAMLGAAGFIIPEALNKYGA 139
+ +PGDYG+DP GL PE ++ A+ E+I+ R+AMLGAAG I PE L K G
Sbjct: 12 SCSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGL 70
Query: 140 NCGPEAV-WFKTGALLLDGNTLNYFGKPIPI------------NXXXXXXXXXXXXXXXX 186
A+ WF+TG + G T Y+ + +
Sbjct: 71 IPAETALPWFQTGVIPPAG-TYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQY 129
Query: 187 YYRITNGLDFE-DKLHPGGPF-DPLGLAKDPDQAALLKVKEIKNGRLAMFSMLGFFIQAY 244
+ + GL + +PGGPF +PLG KD LK+KE+KNGRLAM ++LG+FIQ
Sbjct: 130 FLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGL 189
Query: 245 VTGDGPVENLAKHLSDPFGNNLLTVI 270
VTG GP +NL HL+DP NN+LT +
Sbjct: 190 VTGVGPYQNLLDHLADPVNNNVLTSL 215
>AT3G54890.2 | Symbols: LHCA1 | photosystem I light harvesting
complex gene 1 | chr3:20339706-20340922 REVERSE
LENGTH=207
Length = 207
Score = 107 bits (268), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 95/191 (49%), Gaps = 44/191 (23%)
Query: 82 PEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANC 141
P YL G PGD+G+DP GLG+ P + +Y+ ELIH RWAML G ++PEAL YG
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG-YGN-- 111
Query: 142 GPEAVWFKTGAL-LLDGNTLNYFGKPIPINXXXXXXXXXXXXXXXXYYRITNGLDFEDKL 200
W K L G Y G P+P + + L E
Sbjct: 112 -----WVKAQEWAALPGGQATYLGNPVP------------------WGTLPTILAIEF-- 146
Query: 201 HPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFSMLGFFI-QAYVTGDGPVENLAKHLS 259
L +A + LKVKEIKNGRLA+ + +GF + Q+ G GP+ENLA HL+
Sbjct: 147 --------LAIAFE------LKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 192
Query: 260 DPFGNNLLTVI 270
DP+ NN+ ++
Sbjct: 193 DPWHNNIGDIV 203
>AT2G40100.1 | Symbols: LHCB4.3 | light harvesting complex
photosystem II | chr2:16745884-16747190 FORWARD
LENGTH=276
Length = 276
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 107/234 (45%), Gaps = 60/234 (25%)
Query: 66 DRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLGK----------------------- 102
DR ++ P + PE+L G + GD G+DPFGLGK
Sbjct: 55 DRLVWFPG-----ANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGD 109
Query: 103 -----------KPEDFA---------KYQAFELIHARWAMLGAAGFIIPEALNKYGANCG 142
KP F +++ ELIH RWAMLG G I EAL
Sbjct: 110 IIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGI----- 164
Query: 143 PEAVWFKTGAL-LLDGNTLNYFGKPIPINXXXXXXXXXXXXXXXXYYRITNGLDFEDKLH 201
W G + L++G++ Y G+P+P + + R + LD E +++
Sbjct: 165 ---AWQDAGKVELVEGSS--YLGQPLPFSLTTLIWIEVLVVGYIEFQR-NSELDPEKRIY 218
Query: 202 PGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYVTGDGPVENLA 255
PGG FDPLGLA DP++ LK+ EIK+ RLAM + L F +QA TG GPV LA
Sbjct: 219 PGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLA 272
>AT1G15820.1 | Symbols: LHCB6, CP24 | light harvesting complex
photosystem II subunit 6 | chr1:5446685-5447676 REVERSE
LENGTH=258
Length = 258
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 82 PEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHARWAMLGAAGFIIPEALNK---YG 138
PE+L G +PGD+G+DP GLGK P Y+ ELIH RWAM G + +A + +
Sbjct: 70 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVAWFE 129
Query: 139 ANCGPEAVW-FKTGALLLDGNTLNYFGKPIPINXXXXXXXXXXXXXXXXYYRIT--NGLD 195
A P+A+ F G+LL G L G + T N +
Sbjct: 130 AGAQPDAIAPFSFGSLL--GTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSKTAENFAN 187
Query: 196 FE-DKLHPGGP-FDPLGLAK-------DPDQAAL--LKVKEIKNGRLAMFSMLGFFIQA 243
+ D+ +PGG FDPLGLA +PD L LK+ EIK+ RLAM +ML F+ +A
Sbjct: 188 YTGDQGYPGGRFFDPLGLAGKNRDGVYEPDFEKLERLKLAEIKHSRLAMVAMLIFYFEA 246
>AT3G54890.3 | Symbols: LHCA1 | photosystem I light harvesting
complex gene 1 | chr3:20339961-20340922 REVERSE
LENGTH=164
Length = 164
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 48/88 (54%), Gaps = 9/88 (10%)
Query: 82 PEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANC 141
P YL G PGD+G+DP GLG+ P + +Y+ ELIH RWAML G ++PEAL YG
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG-YGN-- 111
Query: 142 GPEAVWFKTGAL-LLDGNTLNYFGKPIP 168
W K L G Y G P+P
Sbjct: 112 -----WVKAQEWAALPGGQATYLGNPVP 134
>AT5G28450.1 | Symbols: | Chlorophyll A-B binding family protein |
chr5:10372978-10374190 REVERSE LENGTH=173
Length = 173
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 192 NGLDFEDKLHPGGP-FDPLGLAK-DPDQAALLKVKEIKNGRLAMFSMLGFFIQAYVTGDG 249
N L D +PGG FDPLG P + L+ KEIKNGRLAM +++G + Q TG G
Sbjct: 90 NKLTGTDIGYPGGLWFDPLGWGSGSPTKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTG 149
Query: 250 PVENLAKHLSDP 261
P++NL HL+DP
Sbjct: 150 PIDNLFAHLADP 161