Miyakogusa Predicted Gene

Lj2g3v0486970.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0486970.2 Non Chatacterized Hit- tr|I1MQ84|I1MQ84_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.26345
PE,91.09,0,seg,NULL; CPSF_A,Cleavage/polyadenylation specificity
factor, A subunit, C-terminal; MMS1_N,NULL; CL,CUFF.34661.2
         (1100 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G51660.1 | Symbols: CPSF160, ATCPSF160 | cleavage and polyade...  1625   0.0  
AT4G05420.2 | Symbols: DDB1A | damaged DNA binding protein 1A | ...    89   2e-17
AT4G05420.1 | Symbols: DDB1A | damaged DNA binding protein 1A | ...    89   2e-17
AT4G21100.1 | Symbols: DDB1B | damaged DNA binding protein 1B | ...    86   2e-16
AT3G55200.1 | Symbols:  | Cleavage and polyadenylation specifici...    73   1e-12
AT3G55220.1 | Symbols:  | Cleavage and polyadenylation specifici...    73   1e-12

>AT5G51660.1 | Symbols: CPSF160, ATCPSF160 | cleavage and
            polyadenylation specificity factor 160 |
            chr5:20980250-20989268 FORWARD LENGTH=1442
          Length = 1442

 Score = 1625 bits (4208), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 783/1101 (71%), Positives = 912/1101 (82%), Gaps = 17/1101 (1%)

Query: 1    MPRSFFNVELDAANATWLSNDVAXXXXXXXXXXXXXXIFDGRVVQRLDLSKSKASVLSSG 60
            +P S F+VELDAA+ TW+SNDVA              I+DGR VQRLDLSKSKASVL+S 
Sbjct: 358  LPASNFSVELDAAHGTWISNDVALLSTKSGELLLLTLIYDGRAVQRLDLSKSKASVLASD 417

Query: 61   ITTIGNSLFFLASRLGDSMLVQFSCGSSVSMLSSNLKEEVGDIEGDASSTKRLRRSPSDS 120
            IT++GNSLFFL SRLGDS+LVQFSC S  +     L++E  DIEG+    KRLR + SD+
Sbjct: 418  ITSVGNSLFFLGSRLGDSLLVQFSCRSGPAASLPGLRDEDEDIEGEGHQAKRLRMT-SDT 476

Query: 121  LHDMVSGEELSLYGSAPNRTESAQKSFSFAVRDSLINIGPLKDFSYGLRINADANATGIA 180
              D +  EELSL+GS PN ++SAQKSFSFAVRDSL+N+GP+KDF+YGLRINADANATG++
Sbjct: 477  FQDTIGNEELSLFGSTPNNSDSAQKSFSFAVRDSLVNVGPVKDFAYGLRINADANATGVS 536

Query: 181  KQSNYELVCCSGHGKNGSLCVLRQSIRPEVITEVELPGCKGIWTVYHKSARSHISDSSKL 240
            KQSNYELVCCSGHGKNG+LCVLRQSIRPE+ITEVELPGCKGIWTVYHKS+R H +DSSK+
Sbjct: 537  KQSNYELVCCSGHGKNGALCVLRQSIRPEMITEVELPGCKGIWTVYHKSSRGHNADSSKM 596

Query: 241  ADDDDEYHAYLIISLEARTMVLETADLLSEVTESVDYYVQGKTLAAGNLFGRRRVIQVYE 300
            A D+DEYHAYLIISLEARTMVLETADLL+EVTESVDYYVQG+T+AAGNLFGRRRVIQV+E
Sbjct: 597  AADEDEYHAYLIISLEARTMVLETADLLTEVTESVDYYVQGRTIAAGNLFGRRRVIQVFE 656

Query: 301  RGARILDGSFMTQDIXXXXXXXXXXXXXXXALALSVSIADPYVLLRMSDGSIRLLVGDPS 360
             GARILDGSFM Q++               +   SVSIADPYVLLRM+D SIRLLVGDPS
Sbjct: 657  HGARILDGSFMNQELSFGASNSESNSGSESSTVSSVSIADPYVLLRMTDDSIRLLVGDPS 716

Query: 361  TCTISVTXXXXXXXXXXXXXXCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGTDGAPQD 420
            TCT+S++              CTLYHDKGPEPWLRK STDAWLS+GVGEA+D  DG PQD
Sbjct: 717  TCTVSISSPSVLEGSKRKISACTLYHDKGPEPWLRKASTDAWLSSGVGEAVDSVDGGPQD 776

Query: 421  HGDIYCVVCYENGNLEIFDVPNFSCVFSVENFMSGKSHLVDALTKEVAKDSQKGDKGSDA 480
             GDIYCVVCYE+G LEIFDVP+F+CVFSV+ F SG+ HL D    E+  +  K  +    
Sbjct: 777  QGDIYCVVCYESGALEIFDVPSFNCVFSVDKFASGRRHLSDMPIHELEYELNKNSED--- 833

Query: 481  VANQGRKENVLNMKVVELAMQRWSGQHSRPFLFGILSDGTILCYHAYLYESPDGTSKVED 540
              N   KE + N +VVELAMQRWSG H+RPFLF +L+DGTILCYHAYL++  D T K E+
Sbjct: 834  --NTSSKE-IKNTRVVELAMQRWSGHHTRPFLFAVLADGTILCYHAYLFDGVDST-KAEN 889

Query: 541  SVSASGPVDLSSTSVSRLRNLRFVRLPLDAYPREETSNGSPGQHITIFKNIGSYEGFFLS 600
            S+S+  P  L+S+  S+LRNL+F+R+PLD   RE TS+G   Q IT+FKNI  ++GFFLS
Sbjct: 890  SLSSENPAALNSSGSSKLRNLKFLRIPLDTSTREGTSDGVASQRITMFKNISGHQGFFLS 949

Query: 601  GSRPAWVMVLRERLRVHPQLCDGSILAFTVLHNVNCNHGLIYVTSQGVLKICQLPTGSNY 660
            GSRP W M+ RERLR H QLCDGSI AFTVLHNVNCNHG IYVT+QGVLKICQLP+ S Y
Sbjct: 950  GSRPGWCMLFRERLRFHSQLCDGSIAAFTVLHNVNCNHGFIYVTAQGVLKICQLPSASIY 1009

Query: 661  DSHWPVQKVPLKATPHQVTYFAEKNLYPLIVSFPVLKPLSQVVS-LVDPDANHQTENPNL 719
            D++WPVQK+PLKATPHQVTY+AEKNLYPLIVS+PV KPL+QV+S LVD +A  Q +N N+
Sbjct: 1010 DNYWPVQKIPLKATPHQVTYYAEKNLYPLIVSYPVSKPLNQVLSSLVDQEAGQQLDNHNM 1069

Query: 720  NSDEQNRFYTVDEFEVRIMEPEKSGGPWQTKATIPMQSSENALTVKMVTLVNTTSKENET 779
            +SD+  R YTV+EFE++I+EPE+SGGPW+TKA IPMQ+SE+ALTV++VTL+N ++ ENET
Sbjct: 1070 SSDDLQRTYTVEEFEIQILEPERSGGPWETKAKIPMQTSEHALTVRVVTLLNASTGENET 1129

Query: 780  LLAVGTAYVQGEDVAARGRILLFSLGKNTDNPQNLVSEVYSKESKGDVSALASLQGHLLI 839
            LLAVGTAYVQGEDVAARGR+LLFS GKN DN QN+V+EVYS+E KG +SA+AS+QGHLLI
Sbjct: 1130 LLAVGTAYVQGEDVAARGRVLLFSFGKNGDNSQNVVTEVYSRELKGAISAVASIQGHLLI 1189

Query: 840  ASGPKITLHKWTGTELTGIAFFDAPPLHVVSLNIVKNFILIGDVHKSIYFLSWKEQGAQL 899
            +SGPKI LHKW GTEL G+AFFDAPPL+VVS+N+VK+FIL+GDVHKSIYFLSWKEQG+QL
Sbjct: 1190 SSGPKIILHKWNGTELNGVAFFDAPPLYVVSMNVVKSFILLGDVHKSIYFLSWKEQGSQL 1249

Query: 900  NLLAKDFGSLNCFATEFLIDGSTLSLMVSDDQKNIQIFYYAPKMSESWKGQKLLSRAEFH 959
            +LLAKDF SL+CFATEFLIDGSTLSL VSD+QKNIQ+FYYAPKM ESWKG KLLSRAEFH
Sbjct: 1250 SLLAKDFESLDCFATEFLIDGSTLSLAVSDEQKNIQVFYYAPKMIESWKGLKLLSRAEFH 1309

Query: 960  VGAHVTKFLRLQMLSTSDRTGAGPGSDKTNRFALLFGTLDGSIGCIAPLDEITFRRLQSL 1019
            VGAHV+KFLRLQM+S+        G+DK NRFALLFGTLDGS GCIAPLDE+TFRRLQSL
Sbjct: 1310 VGAHVSKFLRLQMVSS--------GADKINRFALLFGTLDGSFGCIAPLDEVTFRRLQSL 1361

Query: 1020 QRKLVDAVPHVAGLNPRAFRQFNSNGKAHRPGPDSIVDCELLCHYEMLPLEEQLEIAHLI 1079
            Q+KLVDAVPHVAGLNP AFRQF S+GKA R GPDSIVDCELLCHYEMLPLEEQLE+AH I
Sbjct: 1362 QKKLVDAVPHVAGLNPLAFRQFRSSGKARRSGPDSIVDCELLCHYEMLPLEEQLELAHQI 1421

Query: 1080 GTTRSQILTNLSDLSLGTSFL 1100
            GTTR  IL +L DLS+GTSFL
Sbjct: 1422 GTTRYSILKDLVDLSVGTSFL 1442


>AT4G05420.2 | Symbols: DDB1A | damaged DNA binding protein 1A |
            chr4:2746288-2752663 FORWARD LENGTH=1067
          Length = 1067

 Score = 88.6 bits (218), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 144/310 (46%), Gaps = 34/310 (10%)

Query: 747  WQTKATIPMQSSENALTVKMVTLVNTTSKENETLLAVGTAYV-QGEDVAARGRILLFSLG 805
            ++  +T P+ S E   ++    L  + +++      VGTAYV   E+   +GRIL+F + 
Sbjct: 733  FEFMSTYPLDSFEYGCSI----LSCSFTEDKNVYYCVGTAYVLPEENEPTKGRILVFIV- 787

Query: 806  KNTDNPQNLVSEVYSKESKGDVSALASLQGHLLIASGPKITLHKWT----GT-ELTGIAF 860
               D    L++E   KE+KG V +L +  G LL A   KI L+KW     GT EL     
Sbjct: 788  --EDGRLQLIAE---KETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECG 842

Query: 861  FDAPPLHVVSLNIVK--NFILIGDVHKSIYFLSWKEQGAQLNLLAKDFGSLNCFATEFLI 918
                  H+++L +    +FI++GD+ KSI  L +K +   +   A+D+ +    A E L 
Sbjct: 843  HHG---HILALYVQTRGDFIVVGDLMKSISLLLYKHEEGAIEERARDYNANWMSAVEILD 899

Query: 919  DGSTLSLMVSDDQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLR--LQMLSTS 976
            D   L    +++  N+       + +   +  +L    E+H+G  V +F    L M    
Sbjct: 900  DDIYLG---AENNFNLLTVKKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPD 956

Query: 977  DRTGAGPGSDKTNRFALLFGTLDGSIGCIAPLDEITFRRLQSLQRKLVDAVPHVAGLNPR 1036
               G  P         ++FGT++G IG IA L +  +  L+ LQ  L   +  V GL+  
Sbjct: 957  SEIGQIP--------TVIFGTVNGVIGVIASLPQEQYTFLEKLQSSLRKVIKGVGGLSHE 1008

Query: 1037 AFRQFNSNGK 1046
             +R FN+  +
Sbjct: 1009 QWRSFNNEKR 1018


>AT4G05420.1 | Symbols: DDB1A | damaged DNA binding protein 1A |
            chr4:2746288-2752663 FORWARD LENGTH=1088
          Length = 1088

 Score = 88.6 bits (218), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 144/310 (46%), Gaps = 34/310 (10%)

Query: 747  WQTKATIPMQSSENALTVKMVTLVNTTSKENETLLAVGTAYV-QGEDVAARGRILLFSLG 805
            ++  +T P+ S E   ++    L  + +++      VGTAYV   E+   +GRIL+F + 
Sbjct: 754  FEFMSTYPLDSFEYGCSI----LSCSFTEDKNVYYCVGTAYVLPEENEPTKGRILVFIV- 808

Query: 806  KNTDNPQNLVSEVYSKESKGDVSALASLQGHLLIASGPKITLHKWT----GT-ELTGIAF 860
               D    L++E   KE+KG V +L +  G LL A   KI L+KW     GT EL     
Sbjct: 809  --EDGRLQLIAE---KETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECG 863

Query: 861  FDAPPLHVVSLNIVK--NFILIGDVHKSIYFLSWKEQGAQLNLLAKDFGSLNCFATEFLI 918
                  H+++L +    +FI++GD+ KSI  L +K +   +   A+D+ +    A E L 
Sbjct: 864  HHG---HILALYVQTRGDFIVVGDLMKSISLLLYKHEEGAIEERARDYNANWMSAVEILD 920

Query: 919  DGSTLSLMVSDDQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLR--LQMLSTS 976
            D   L    +++  N+       + +   +  +L    E+H+G  V +F    L M    
Sbjct: 921  DDIYLG---AENNFNLLTVKKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPD 977

Query: 977  DRTGAGPGSDKTNRFALLFGTLDGSIGCIAPLDEITFRRLQSLQRKLVDAVPHVAGLNPR 1036
               G  P         ++FGT++G IG IA L +  +  L+ LQ  L   +  V GL+  
Sbjct: 978  SEIGQIP--------TVIFGTVNGVIGVIASLPQEQYTFLEKLQSSLRKVIKGVGGLSHE 1029

Query: 1037 AFRQFNSNGK 1046
             +R FN+  +
Sbjct: 1030 QWRSFNNEKR 1039


>AT4G21100.1 | Symbols: DDB1B | damaged DNA binding protein 1B |
            chr4:11258916-11265309 REVERSE LENGTH=1088
          Length = 1088

 Score = 85.5 bits (210), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 128/273 (46%), Gaps = 26/273 (9%)

Query: 782  AVGTAYV-QGEDVAARGRILLFSLGKNTDNPQNLVSEVYSKESKGDVSALASLQGHLLIA 840
             VGTAYV   E+   +GRIL+F +    +    L++E   KE+KG V +L +  G LL +
Sbjct: 785  CVGTAYVLPEENEPTKGRILVFIV---EEGRLQLITE---KETKGAVYSLNAFNGKLLAS 838

Query: 841  SGPKITLHKWT----GT-ELTGIAFFDAPPLHVVSLNIVK--NFILIGDVHKSIYFLSWK 893
               KI L+KW     GT EL           H+++L +    +FI +GD+ KSI  L +K
Sbjct: 839  INQKIQLYKWMLRDDGTRELQSECGHHG---HILALYVQTRGDFIAVGDLMKSISLLIYK 895

Query: 894  EQGAQLNLLAKDFGSLNCFATEFLIDGSTLSLMVSDDQKNIQIFYYAPKMSESWKGQKLL 953
             +   +   A+D+ +    A E L D   L    +D+  NI       + +   +  ++ 
Sbjct: 896  HEEGAIEERARDYNANWMTAVEILNDDIYLG---TDNCFNIFTVKKNNEGATDEERARME 952

Query: 954  SRAEFHVGAHVTKFLRLQMLSTSDRTGAGPGSDKTNRFALLFGTLDGSIGCIAPLDEITF 1013
               E+H+G  V +F    ++         P SD      ++FGT+ G IG IA L +  +
Sbjct: 953  VVGEYHIGEFVNRFRHGSLVMKL------PDSDIGQIPTVIFGTVSGMIGVIASLPQEQY 1006

Query: 1014 RRLQSLQRKLVDAVPHVAGLNPRAFRQFNSNGK 1046
              L+ LQ  L   +  V GL+   +R FN+  +
Sbjct: 1007 AFLEKLQTSLRKVIKGVGGLSHEQWRSFNNEKR 1039


>AT3G55200.1 | Symbols:  | Cleavage and polyadenylation specificity
            factor (CPSF) A subunit protein | chr3:20460533-20464361
            FORWARD LENGTH=1214
          Length = 1214

 Score = 72.8 bits (177), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 86/380 (22%), Positives = 164/380 (43%), Gaps = 56/380 (14%)

Query: 735  VRIMEPEKSGGPWQTKATIPMQSSENALTVKMVTLVNTTSKENETLLAVGTAYVQGEDVA 794
            +R+++P+ +     T   + +Q +E A +V     VN   KE  TLLAVGT  V+G    
Sbjct: 863  IRVLDPKTA----TTTCLLELQDNEAAYSV---CTVNFHDKEYGTLLAVGT--VKGMQFW 913

Query: 795  ARGRIL--LFSLGKNTDNPQNLVSEVYSKESKGDVSALASLQGHLLIASGPKITLHKWTG 852
             +  ++     + +  ++ ++L   ++  + +G   AL   QG LL   GP + L+    
Sbjct: 914  PKKNLVAGFIHIYRFVEDGKSL-ELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGK 972

Query: 853  TELTGIAFFDAPPLHVVSLNIVKNFILIGDVHKSIYFLSWKEQGAQLNLLAKD------- 905
              L         P  ++S+   ++ I +GD+ +S ++  ++    QL + A D       
Sbjct: 973  KRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVPRWLT 1032

Query: 906  ---------FGSLNCFATEFLID-GSTLSLMVSDDQKNIQIFYYAPKMSESWKGQKLLSR 955
                         + F   + +     LS  + +D    +I +   K++ +    K+   
Sbjct: 1033 ASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGA--PNKVDEI 1090

Query: 956  AEFHVGAHVTKFLRLQMLSTSDRTGAGPGSDKTNRFALLFGTLDGSIGCIAPL---DEIT 1012
             +FHVG  VT   +  M+         PG  ++    +++GT+ GSIG +      D++ 
Sbjct: 1091 VQFHVGDVVTCLQKASMI---------PGGSES----IMYGTVMGSIGALHAFTSRDDVD 1137

Query: 1013 FRRLQSLQRKLVDAVPHVAGLNPRAFRQFNSNGKAHRPGPDSIVDCELLCHYEMLPLEEQ 1072
            F     L+  +    P + G +  A+R       A+ P  D ++D +L   +  LP++ Q
Sbjct: 1138 F--FSHLEMHMRQEYPPLCGRDHMAYR------SAYFPVKD-VIDGDLCEQFPTLPMDLQ 1188

Query: 1073 LEIAHLIGTTRSQILTNLSD 1092
             +IA  +  T ++IL  L D
Sbjct: 1189 RKIADELDRTPAEILKKLED 1208


>AT3G55220.1 | Symbols:  | Cleavage and polyadenylation specificity
            factor (CPSF) A subunit protein | chr3:20467116-20470944
            REVERSE LENGTH=1214
          Length = 1214

 Score = 72.8 bits (177), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 86/380 (22%), Positives = 164/380 (43%), Gaps = 56/380 (14%)

Query: 735  VRIMEPEKSGGPWQTKATIPMQSSENALTVKMVTLVNTTSKENETLLAVGTAYVQGEDVA 794
            +R+++P+ +     T   + +Q +E A +V     VN   KE  TLLAVGT  V+G    
Sbjct: 863  IRVLDPKTA----TTTCLLELQDNEAAYSV---CTVNFHDKEYGTLLAVGT--VKGMQFW 913

Query: 795  ARGRIL--LFSLGKNTDNPQNLVSEVYSKESKGDVSALASLQGHLLIASGPKITLHKWTG 852
             +  ++     + +  ++ ++L   ++  + +G   AL   QG LL   GP + L+    
Sbjct: 914  PKKNLVAGFIHIYRFVEDGKSL-ELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGK 972

Query: 853  TELTGIAFFDAPPLHVVSLNIVKNFILIGDVHKSIYFLSWKEQGAQLNLLAKD------- 905
              L         P  ++S+   ++ I +GD+ +S ++  ++    QL + A D       
Sbjct: 973  KRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVPRWLT 1032

Query: 906  ---------FGSLNCFATEFLID-GSTLSLMVSDDQKNIQIFYYAPKMSESWKGQKLLSR 955
                         + F   + +     LS  + +D    +I +   K++ +    K+   
Sbjct: 1033 ASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGA--PNKVDEI 1090

Query: 956  AEFHVGAHVTKFLRLQMLSTSDRTGAGPGSDKTNRFALLFGTLDGSIGCIAPL---DEIT 1012
             +FHVG  VT   +  M+         PG  ++    +++GT+ GSIG +      D++ 
Sbjct: 1091 VQFHVGDVVTCLQKASMI---------PGGSES----IMYGTVMGSIGALHAFTSRDDVD 1137

Query: 1013 FRRLQSLQRKLVDAVPHVAGLNPRAFRQFNSNGKAHRPGPDSIVDCELLCHYEMLPLEEQ 1072
            F     L+  +    P + G +  A+R       A+ P  D ++D +L   +  LP++ Q
Sbjct: 1138 F--FSHLEMHMRQEYPPLCGRDHMAYR------SAYFPVKD-VIDGDLCEQFPTLPMDLQ 1188

Query: 1073 LEIAHLIGTTRSQILTNLSD 1092
             +IA  +  T ++IL  L D
Sbjct: 1189 RKIADELDRTPAEILKKLED 1208