Miyakogusa Predicted Gene

Lj2g3v0486970.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0486970.1 Non Chatacterized Hit- tr|I1MQ84|I1MQ84_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.26345
PE,88.52,0,MMS1_N,NULL; seg,NULL; CLEAVAGE AND POLYADENYLATION
SPECIFICITY FACTOR SUBUNIT 1 (CLEAVAGE AND POLYA,CUFF.34661.1
         (999 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G51660.1 | Symbols: CPSF160, ATCPSF160 | cleavage and polyade...  1413   0.0  
AT4G21100.1 | Symbols: DDB1B | damaged DNA binding protein 1B | ...    50   9e-06

>AT5G51660.1 | Symbols: CPSF160, ATCPSF160 | cleavage and
           polyadenylation specificity factor 160 |
           chr5:20980250-20989268 FORWARD LENGTH=1442
          Length = 1442

 Score = 1413 bits (3657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 682/1005 (67%), Positives = 801/1005 (79%), Gaps = 17/1005 (1%)

Query: 1   MSFAAYKMMQWPTGVEHCASGFLTHSRADLASHTIIXXXXXXXXXXXXXXXRHPSPLPNL 60
           MSFAAYKMM WPTGVE+CASG++THS +D      I               R   PLPN+
Sbjct: 1   MSFAAYKMMHWPTGVENCASGYITHSLSDSTLQIPIVSVHDDIEAEWPNPKRGIGPLPNV 60

Query: 61  VVTAANVLEVYIVRLQD-------RHPSKPSSARGTLLDGISGASLELVCHYRLHGNVKS 113
           V+TAAN+LEVYIVR Q+       R+P    + RG ++DG+ G SLELVCHYRLHGNV+S
Sbjct: 61  VITAANILEVYIVRAQEEGNTQELRNPKL--AKRGGVMDGVYGVSLELVCHYRLHGNVES 118

Query: 114 MAVLSIGGGDTSKRRDSIILTFKDAKISVLEYDDSIHGLRTSSLHCFEGPEWLHLKRGRE 173
           +AVL +GGG++SK RDSIILTF+DAKISVLE+DDSIH LR +S+HCFEGP+WLHLKRGRE
Sbjct: 119 IAVLPMGGGNSSKGRDSIILTFRDAKISVLEFDDSIHSLRMTSMHCFEGPDWLHLKRGRE 178

Query: 174 QFARGPVVKVDPQGRCGGVLVYDLQMIILKTTQAGSGLVGEDDPLGSGGAVAARIDSSYM 233
            F RGP+VKVDPQGRCGGVLVY LQMIILKT+Q GSGLVG+DD   SGG V+AR++SSY+
Sbjct: 179 SFPRGPLVKVDPQGRCGGVLVYGLQMIILKTSQVGSGLVGDDDAFSSGGTVSARVESSYI 238

Query: 234 INLRDLDMRHVKDFTFVHGYIEPVMVILHERELSWAGRVAWKHHTCMISALSISTTLKQH 293
           INLRDL+M+HVKDF F+HGYIEPV+VIL E E +WAGRV+WKHHTC++SALSI++TLKQH
Sbjct: 239 INLRDLEMKHVKDFVFLHGYIEPVIVILQEEEHTWAGRVSWKHHTCVLSALSINSTLKQH 298

Query: 294 PLIWSAVNLPHDAYKLIAVPSPIGGVLVIAANTIHYHSQSASCALALNSYAVSLDSSQEM 353
           P+IWSA+NLPHDAYKL+AVPSPIGGVLV+ ANTIHYHSQSASCALALN+YA S DSSQE+
Sbjct: 299 PVIWSAINLPHDAYKLLAVPSPIGGVLVLCANTIHYHSQSASCALALNNYASSADSSQEL 358

Query: 354 PRSFFNVELDAANATWLSNDVAXXXXXXXXXXXXXXIFDGRVVQRLDLSKSKASVLSSGI 413
           P S F+VELDAA+ TW+SNDVA              I+DGR VQRLDLSKSKASVL+S I
Sbjct: 359 PASNFSVELDAAHGTWISNDVALLSTKSGELLLLTLIYDGRAVQRLDLSKSKASVLASDI 418

Query: 414 TTIGNSLFFLASRLGDSMLVQFSCGSSVSMLSSNLKEEVGDIEGDASSTKRLRRSPSDSL 473
           T++GNSLFFL SRLGDS+LVQFSC S  +     L++E  DIEG+    KRLR + SD+ 
Sbjct: 419 TSVGNSLFFLGSRLGDSLLVQFSCRSGPAASLPGLRDEDEDIEGEGHQAKRLRMT-SDTF 477

Query: 474 HDMVSGEELSLYGSAPNRTESAQKSFSFAVRDSLINIGPLKDFSYGLRINADANATGIAK 533
            D +  EELSL+GS PN ++SAQKSFSFAVRDSL+N+GP+KDF+YGLRINADANATG++K
Sbjct: 478 QDTIGNEELSLFGSTPNNSDSAQKSFSFAVRDSLVNVGPVKDFAYGLRINADANATGVSK 537

Query: 534 QSNYELVCCSGHGKNGSLCVLRQSIRPEVITEVELPGCKGIWTVYHKSARSHISDSSKLA 593
           QSNYELVCCSGHGKNG+LCVLRQSIRPE+ITEVELPGCKGIWTVYHKS+R H +DSSK+A
Sbjct: 538 QSNYELVCCSGHGKNGALCVLRQSIRPEMITEVELPGCKGIWTVYHKSSRGHNADSSKMA 597

Query: 594 DDDDEYHAYLIISLEARTMVLETADLLSEVTESVDYYVQGKTLAAGNLFGRRRVIQVYER 653
            D+DEYHAYLIISLEARTMVLETADLL+EVTESVDYYVQG+T+AAGNLFGRRRVIQV+E 
Sbjct: 598 ADEDEYHAYLIISLEARTMVLETADLLTEVTESVDYYVQGRTIAAGNLFGRRRVIQVFEH 657

Query: 654 GARILDGSFMTQDIXXXXXXXXXXXXXXXALALSVSIADPYVLLRMSDGSIRLLVGDPST 713
           GARILDGSFM Q++               +   SVSIADPYVLLRM+D SIRLLVGDPST
Sbjct: 658 GARILDGSFMNQELSFGASNSESNSGSESSTVSSVSIADPYVLLRMTDDSIRLLVGDPST 717

Query: 714 CTISVTXXXXXXXXXXXXXXCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGTDGAPQDH 773
           CT+S++              CTLYHDKGPEPWLRK STDAWLS+GVGEA+D  DG PQD 
Sbjct: 718 CTVSISSPSVLEGSKRKISACTLYHDKGPEPWLRKASTDAWLSSGVGEAVDSVDGGPQDQ 777

Query: 774 GDIYCVVCYENGNLEIFDVPNFSCVFSVENFMSGKSHLVDALTKEVAKDSQKGDKGSDAV 833
           GDIYCVVCYE+G LEIFDVP+F+CVFSV+ F SG+ HL D    E+  +  K  +     
Sbjct: 778 GDIYCVVCYESGALEIFDVPSFNCVFSVDKFASGRRHLSDMPIHELEYELNKNSED---- 833

Query: 834 ANQGRKENVLNMKVVELAMQRWSGQHSRPFLFGILSDGTILCYHAYLYESPDGTSKVEDS 893
            N   KE + N +VVELAMQRWSG H+RPFLF +L+DGTILCYHAYL++  D T K E+S
Sbjct: 834 -NTSSKE-IKNTRVVELAMQRWSGHHTRPFLFAVLADGTILCYHAYLFDGVDST-KAENS 890

Query: 894 VSASGPVDLSSTSVSRLRNLRFVRLPLDAYPREETSNGSPGQHITIFKNIGSYEGFFLSG 953
           +S+  P  L+S+  S+LRNL+F+R+PLD   RE TS+G   Q IT+FKNI  ++GFFLSG
Sbjct: 891 LSSENPAALNSSGSSKLRNLKFLRIPLDTSTREGTSDGVASQRITMFKNISGHQGFFLSG 950

Query: 954 SRPAWVMVLRERLRVHPQLCDGSILAFTVLHNVNCNHGLIYVTSQ 998
           SRP W M+ RERLR H QLCDGSI AFTVLHNVNCNHG IYVT+Q
Sbjct: 951 SRPGWCMLFRERLRFHSQLCDGSIAAFTVLHNVNCNHGFIYVTAQ 995


>AT4G21100.1 | Symbols: DDB1B | damaged DNA binding protein 1B |
           chr4:11258916-11265309 REVERSE LENGTH=1088
          Length = 1088

 Score = 50.1 bits (118), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 80/359 (22%), Positives = 147/359 (40%), Gaps = 69/359 (19%)

Query: 94  ISGASLELVCHYRLHGNVKSMAVLSIGGGDTSKRRDSIILTFKDAKISVLEYDDSIHGLR 153
           +S   L+ +    L+G + +M +    G    + +D + +  +  K  VL++D     L 
Sbjct: 45  LSPQGLQTILDVPLYGRIATMELFRPHG----EAQDFLFVATERYKFCVLQWDYESSELI 100

Query: 154 TSSLHCFEGPEWLHLKRGREQFARGPVVKVDPQGRCGGVLVYDLQMIILKTTQAGSGLVG 213
           T ++    G     + R  +    G +  +DP  R  G+ +YD    ++           
Sbjct: 101 TRAM----GDVSDRIGRPTDN---GQIGIIDPDCRVIGLHLYDGLFKVI----------- 142

Query: 214 EDDPLGSGGAVAARIDSSYMINLRDLDMRHVKDFTFVHGYIEPVMVILHERELSWAGRVA 273
              P  + G    ++  ++ I L +L    V D  F++G  +P + +L++       + A
Sbjct: 143 ---PFDNKG----QLKEAFNIRLEEL---QVLDIKFLYGCTKPTIAVLYQD-----NKDA 187

Query: 274 WKHHTCMISALSISTTLKQHPLI---WSAVNLPHDAYKLIAVPSPIGGVLVIAANTIHYH 330
               T  +S       LK    +   WS  NL + A  LI VPSP+ GVL+I   TI Y 
Sbjct: 188 RHVKTYEVS-------LKDKNFVEGPWSQNNLDNGADLLIPVPSPLCGVLIIGEETIVYC 240

Query: 331 SQSASCALALNSYAVSLDSSQEMPRSFFNVELDAANATWLSNDVAXXXXXXXXXXXXXXI 390
           S +A  A+ +            + +++  V+LD +   +L  D A               
Sbjct: 241 SANAFKAIPIRP---------SITKAYGRVDLDGSR--YLLGDHAGLIHLLVITH----- 284

Query: 391 FDGRVVQRLDLSKSKASVLSSGITTIGNSLFFLASRLGDSMLVQFSC-----GSSVSML 444
            +   V  L +     + ++S I+ + N++ F+ S  GDS L++ +      GS V +L
Sbjct: 285 -EKEKVTGLKIELLGETSIASSISYLDNAVVFVGSSYGDSQLIKLNLQPDAKGSYVEIL 342